mRNA_H-paniculata_contig1175.1118.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1175.1118.1
Unique NamemRNA_H-paniculata_contig1175.1118.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1175.1118.1 vs. uniprot
Match: D8LH28_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH28_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 2.070e-14
Identity = 50/85 (58.82%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:   22 GPGAGDG----GVDV--------DAAVTVGKALLEVQRQVLRKLCATVYPEFQASPSYEHLCEELTTGARSSARARQPASPPYSL 240
            GPGAGD     G D         D AV+VGKALL++QR VLRK+CA+VYP+FQAS S+EHLC ELTTG RS AR   P  PP  L
Sbjct:   59 GPGAGDASSGDGPDTQKGRDAGDDYAVSVGKALLDMQRHVLRKICASVYPDFQASSSHEHLCAELTTGTRSPARL--PPGPPDQL 141
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BLAST of mRNA_H-paniculata_contig1175.1118.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.980e-5
Identity = 28/42 (66.67%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  115 LCATVYPEFQASPSYEHLCEELTTGARSSARARQPASPPYSL 240
            LCA+VYP+FQAS S+EHLC ELTTG RS AR   P  PP  L
Sbjct:  869 LCASVYPDFQASSSHEHLCAELTTGTRSPARL--PPGPPDEL 908
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1175.1118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH28_ECTSI2.070e-1458.82UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHW4_9PHAE2.980e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1175contigH-paniculata_contig1175:4307..6098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D8LH28
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size692
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928883.3931754-CDS-H-paniculata_contig1175:4306..44201622928883.3931754-CDS-H-paniculata_contig1175:4306..4420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1175 4307..4420 +
1691480655.980175-CDS-H-paniculata_contig1175:4306..44201691480655.980175-CDS-H-paniculata_contig1175:4306..4420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1175 4307..4420 +
1622928883.40259-CDS-H-paniculata_contig1175:5522..60981622928883.40259-CDS-H-paniculata_contig1175:5522..6098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1175 5523..6098 +
1691480655.9910145-CDS-H-paniculata_contig1175:5522..60981691480655.9910145-CDS-H-paniculata_contig1175:5522..6098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1175 5523..6098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1175.1118.1prot_H-paniculata_contig1175.1118.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1175 4307..6098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1175.1118.1

>prot_H-paniculata_contig1175.1118.1 ID=prot_H-paniculata_contig1175.1118.1|Name=mRNA_H-paniculata_contig1175.1118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=230bp
TGLAAAVGPGAGDGGVDVDAAVTVGKALLEVQRQVLRKLCATVYPEFQAS
PSYEHLCEELTTGARSSARARQPASPPYSLSNSPTTNVDANGVFYLDDGG
GGDDGIGGDCSATASAGGYSRLSMTPSPQEKQQHRLRQEERSPSPFSLLS
SSPEKRGNSKNDDSDSGNHLRRSIDPSIGSGSVGGSGSVNGRSGTGGSER
SSWSAGGQIDSSVVEMFGPQFGVLWEASRG
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mRNA from alignment at H-paniculata_contig1175:4307..6098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1175.1118.1 ID=mRNA_H-paniculata_contig1175.1118.1|Name=mRNA_H-paniculata_contig1175.1118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1792bp|location=Sequence derived from alignment at H-paniculata_contig1175:4307..6098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGCTGGCGGCTGCTGTCGGCCCGGGAGCGGGGGATGGGGGCGTGGA
CGTGGATGCTGCCGTGACGGTTGGGAAAGCGTTGCTGGAAGTGCAGAGGC
AGGTGTTGCGAAAGGTGAGTAGTACTGATTCATGCTCGAGTGTGGTGCTG
TCTGTTGGGTTCGGCCAGTGTATTTGTTTTTGGCGGGGGTGGAGTATGGT
GGGCTCATGGGATTGCTGGGTGATAACGCATGTGTGTATAGATGCTGAGT
TTACTTGGATTGTTCATGTGGGCAATTAAACAAAATTTTCGGCTCGATAT
CGTCATCAGCAAAATTAGGAAAAGTCAAGGCTCGTTTGAATAGATGGATG
GATGGATTGATGCATTGTACGCCATGTCCTTGGGTCAGGAGAACTTTGGT
TGTGGTTGAAGATCGTTCTGCTGCATCTACAATGTGTACATTGCACATGT
GGGGGTGATGAGAGGAGGACGTGGGGGGCAGAGGAGATGGTTTTTCTTGT
TTCGGAGGACTTTGGAGTCGGTGCTTTTATTACTGCTTTTGTTTCACCAG
CAAAATAACTGGTGACGTGTAGTTGCTATTTTTATTGTTTTACCTGTGCC
TGGGTATTTAGTATCGTGTGGTGTTTCGTAAGAAGCTGCAAGGGTGCTTT
TTTCCCAAGCCTGAGGCTGTGCACGTTGATGATGTGATGCTTTGTGTGCT
GGTAAATTCGTGCACTGTTTCTTGCTACATTTAACTTTTGGAGAGCTCGC
ATATCCAAGAATCTGCTTTTTGATCATGTCTCGTACGCAAATAGGCATCC
ACACGCTTGGAAACAGCAATAGAGGCTATTGTACAGGCTAGGGAATGATG
CCTCATTTTGTCTATAAAGAGTGTTGGTTAATCCATCGGCATTTTCCCGT
CCAGCGGAAGAACAACAGTGGTTGACTTCACCCTTATCGTGCACCCTGAA
AGAGTTGATACTCTCATCACAACGTTCTTACGCAACTCCCAATTATCTTA
CCCCCCCTCCTCTCATTAGTCATGATCTAGGTTTACTGATCAGTGTACAC
ACAACATAACCTCAACATGGGTACAGTGGAGCGTTGTAATATGAGGTTGC
CTTCCCCTTTGATCTAAAGTTATTCATGAGTGTACACAACAGAAACTTGA
ATGCAGATGCACCCACGCGTCCCCCCCGCCCCGTGCATCAATTCTCCCCA
CACAAATTTGCACAAGCTCTGCGCGACCGTGTACCCAGAATTTCAAGCTA
GTCCTAGCTACGAGCACCTATGCGAAGAGCTCACGACCGGGGCGCGCTCA
TCCGCCCGCGCCCGTCAGCCCGCTTCCCCTCCCTACAGCTTGTCCAACAG
CCCCACCACCAACGTCGATGCCAACGGAGTTTTTTACCTTGACGATGGTG
GTGGCGGCGATGACGGGATTGGCGGGGATTGCAGTGCCACGGCATCCGCC
GGAGGTTACTCTAGGTTATCGATGACCCCGTCGCCGCAGGAGAAGCAGCA
GCACAGGCTGAGGCAAGAGGAGCGGTCTCCATCTCCGTTTTCGCTTCTAA
GCAGTTCTCCAGAGAAGCGGGGGAATAGCAAAAACGACGATAGTGACAGC
GGAAACCATTTGCGAAGAAGCATCGACCCCTCAATAGGCAGCGGGAGCGT
TGGCGGCAGCGGAAGCGTTAATGGCCGCTCTGGTACTGGGGGCAGTGAGA
GATCTTCATGGAGCGCGGGTGGGCAGATAGATTCGTCGGTGGTGGAGATG
TTCGGGCCGCAGTTTGGGGTGTTGTGGGAGGCTTCTCGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1175:4307..6098+

>mRNA_H-paniculata_contig1175.1118.1 ID=mRNA_H-paniculata_contig1175.1118.1|Name=mRNA_H-paniculata_contig1175.1118.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at H-paniculata_contig1175:4307..6098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGGGCTGGCGGCTGCTGTCGGCCCGGGAGCGGGGGATGGGGGCGTGGA
CGTGGATGCTGCCGTGACGGTTGGGAAAGCGTTGCTGGAAGTGCAGAGGC
AGGTGTTGCGAAAGACGGGGCTGGCGGCTGCTGTCGGCCCGGGAGCGGGG
GATGGGGGCGTGGACGTGGATGCTGCCGTGACGGTTGGGAAAGCGTTGCT
GGAAGTGCAGAGGCAGGTGTTGCGAAAGCTCTGCGCGACCGTGTACCCAG
AATTTCAAGCTAGTCCTAGCTACGAGCACCTATGCGAAGAGCTCACGACC
GGGGCGCGCTCATCCGCCCGCGCCCGTCAGCCCGCTTCCCCTCCCTACAG
CTTGTCCAACAGCCCCACCACCAACGTCGATGCCAACGGAGTTTTTTACC
TTGACGATGGTGGTGGCGGCGATGACGGGATTGGCGGGGATTGCAGTGCC
ACGGCATCCGCCGGAGGTTACTCTAGGTTATCGATGACCCCGTCGCCGCA
GGAGAAGCAGCAGCACAGGCTGAGGCAAGAGGAGCGGTCTCCATCTCCGT
TTTCGCTTCTAAGCAGTTCTCCAGAGAAGCGGGGGAATAGCAAAAACGAC
GATAGTGACAGCGGAAACCATTTGCGAAGAAGCATCGACCCCTCAATAGG
CAGCGGGAGCGTTGGCGGCAGCGGAAGCGTTAATGGCCGCTCTGGTACTG
GGGGCAGTGAGAGATCTTCATGGAGCGCGGGTGGGCAGATAGATTCGTCG
GTGGTGGAGATGTTCGGGCCGCAGTTTGGGGTGTTGTGGGAGGCTTCTCG
TGGGCTCTGCGCGACCGTGTACCCAGAATTTCAAGCTAGTCCTAGCTACG
AGCACCTATGCGAAGAGCTCACGACCGGGGCGCGCTCATCCGCCCGCGCC
CGTCAGCCCGCTTCCCCTCCCTACAGCTTGTCCAACAGCCCCACCACCAA
CGTCGATGCCAACGGAGTTTTTTACCTTGACGATGGTGGTGGCGGCGATG
ACGGGATTGGCGGGGATTGCAGTGCCACGGCATCCGCCGGAGGTTACTCT
AGGTTATCGATGACCCCGTCGCCGCAGGAGAAGCAGCAGCACAGGCTGAG
GCAAGAGGAGCGGTCTCCATCTCCGTTTTCGCTTCTAAGCAGTTCTCCAG
AGAAGCGGGGGAATAGCAAAAACGACGATAGTGACAGCGGAAACCATTTG
CGAAGAAGCATCGACCCCTCAATAGGCAGCGGGAGCGTTGGCGGCAGCGG
AAGCGTTAATGGCCGCTCTGGTACTGGGGGCAGTGAGAGATCTTCATGGA
GCGCGGGTGGGCAGATAGATTCGTCGGTGGTGGAGATGTTCGGGCCGCAG
TTTGGGGTGTTGTGGGAGGCTTCTCGTGGG
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