mRNA_H-paniculata_contig1173.1110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8D1EEP9_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1EEP9_PIG) HSP 1 Score: 132 bits (331), Expect = 4.610e-35 Identity = 67/132 (50.76%), Postives = 84/132 (63.64%), Query Frame = 1 Query: 1 VWDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGACQAILIGHEGEISKVLNRVVVPRLLASTCFNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITG 396 +WD + +CV TL H+DEILD F+ TG + TASAD V++ + C+ +IGH+ FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY+GD IITG Sbjct: 171 LWDATNEKCVATLTCHDDEILDSCFDYTGKLIATASAD----VYSPTHRLCRDPVIGHD------------------ISFNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITG 280
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A2G9RJ73_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RJ73_LITCT) HSP 1 Score: 98.6 bits (244), Expect = 4.900e-23 Identity = 51/83 (61.45%), Postives = 58/83 (69.88%), Query Frame = 1 Query: 163 LIGHEGEISKVLNR----VVVPRLLASTC---FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTII 390 LIGH GEIS ++ + TC FN QG+RILTASSDK A LWD TG C+Q+LEGHTDEIFSCAFNYEG+TII Sbjct: 124 LIGHRGEISSAQFNWDCSLIATASMDKTCRICFNAQGSRILTASSDKTACLWDPQTGQCVQVLEGHTDEIFSCAFNYEGNTII 206
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A643C2B2_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643C2B2_BALPH) HSP 1 Score: 97.1 bits (240), Expect = 1.270e-22 Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 Query: 238 FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITG 396 FNPQG R+LT SSDK AR+WD TG CLQ+LEGHTDEIFSCAFNY+GD IITG Sbjct: 80 FNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNYKGDIIITG 132
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A3R7BAZ2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BAZ2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 4.690e-22 Identity = 50/152 (32.89%), Postives = 83/152 (54.61%), Query Frame = 1 Query: 1 VWDVASGQC--------VHTLR----------GHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGACQAILIGHEGEISK-VLNRVVVPRLLASTCFNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGA 399 VWD +G C +H R GH E++ V FNA+GS++ + S D T+ V++ G + L GH E++ + +A+ F+ QG R+++A +D +R+W A TG+CLQ+L GH D++F+ F Y+G T++T + Sbjct: 162 VWDTTTGMCKQVLTGRIIHRRRHQVGFLKSVLGHEGEVVSVGFNASGSRVGSCSMDCTATVWDVETGKAEFDLTGHAAEVACFAFDGSKSSSFMATVAFSRQGGRLVSAGADHTSRVWHAQTGECLQVLRGHEDQVFAAHFAYDGATVVTAS 313
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A5N4E733_CAMDR (Dynein assembly factor with WDR repeat domains 1 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4E733_CAMDR) HSP 1 Score: 99.8 bits (247), Expect = 5.820e-22 Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 1 Query: 238 FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGAL 402 FNPQG+R+LT SSDK AR+WDA TG CLQ+LEGHTDEIFSCAFNY+GD IITG + Sbjct: 376 FNPQGSRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGTI 430
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8C8D1H4_ONCTS (Uncharacterized protein n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=A0A8C8D1H4_ONCTS) HSP 1 Score: 97.1 bits (240), Expect = 8.430e-22 Identity = 65/151 (43.05%), Postives = 79/151 (52.32%), Query Frame = 1 Query: 1 VWDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRV--------------------FNTVNGACQAI-LIGHEGEISKVLNRVVVPRLLASTCFNPQG-TRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTI 387 +WDV SG+ VHTL GH EI V F+ S L+T S D +SRV + +G I L GHEGEI QG +R+L+AS+D +ARLWD +G LQ+ EGHTDEIFS AFNYEGDTI Sbjct: 140 LWDVPSGRRVHTLIGHRGEISSVQFDWDCSLLITGSMDKSSRVTXXXXXXXXXXXXXXXXXXXXXSADGRTTEIQLEGHEGEI--------------------QGESRVLSASADMMARLWDVQSGVYLQVPEGHTDEIFSSAFNYEGDTI 270
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8D1K9R8_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1K9R8_PIG) HSP 1 Score: 97.4 bits (241), Expect = 3.740e-21 Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1 Query: 238 FNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITG 396 FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY+GD IITG Sbjct: 351 FNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITG 403
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A2P4TGK6_BAMTH (Uncharacterized protein n=1 Tax=Bambusicola thoracicus TaxID=9083 RepID=A0A2P4TGK6_BAMTH) HSP 1 Score: 88.6 bits (218), Expect = 6.150e-19 Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 1 Query: 250 GTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGALTL 408 G RILTASSDK ARLWDA TG CLQ LEGHTDEIFSCAFNY+G+ IITG+ ++ Sbjct: 153 GNRILTASSDKTARLWDAATGHCLQTLEGHTDEIFSCAFNYKGNIIITGSWSI 205
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A674C646_SALTR (Uncharacterized protein n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A674C646_SALTR) HSP 1 Score: 87.8 bits (216), Expect = 9.230e-19 Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 4 WDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGACQAILIGHEGEISKVLNRVVVPRLLASTCFNPQGTRILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTI 387 WDV +G+ V GH+ EI+ +SFN G +LVT S D T +++ +G Q + S+V IL++ +D++ARLWD +G LQ+LEGHTDEIFS AFNYEGDTI Sbjct: 112 WDVQTGEEV----GHSAEIISLSFNTVGDQLVTGSFDHTVSLWDVPSGRSQ-----RGDQHSRV---------------------ILSSRADRMARLWDVQSGVYLQVLEGHTDEIFSYAFNYEGDTI 209
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Match: A0A8C9KXN0_SERCA (Dynein assembly factor with WD repeats 1 n=15 Tax=Passeriformes TaxID=9126 RepID=A0A8C9KXN0_SERCA) HSP 1 Score: 88.2 bits (217), Expect = 6.640e-18 Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 Query: 259 ILTASSDKIARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTIITGA 399 ILTASSDK ARLWDA TG CLQILEGH DEIFSCAFNY+GDTIITG+ Sbjct: 341 ILTASSDKTARLWDAATGHCLQILEGHADEIFSCAFNYKGDTIITGS 387 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1173.1110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1173.1110.1 >prot_H-paniculata_contig1173.1110.1 ID=prot_H-paniculata_contig1173.1110.1|Name=mRNA_H-paniculata_contig1173.1110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp VWDVASGQCVHTLRGHNDEILDVSFNATGSKLVTASADGTSRVFNTVNGAback to top mRNA from alignment at H-paniculata_contig1173:17337..18267- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1173.1110.1 ID=mRNA_H-paniculata_contig1173.1110.1|Name=mRNA_H-paniculata_contig1173.1110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=931bp|location=Sequence derived from alignment at H-paniculata_contig1173:17337..18267- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1173:17337..18267- >mRNA_H-paniculata_contig1173.1110.1 ID=mRNA_H-paniculata_contig1173.1110.1|Name=mRNA_H-paniculata_contig1173.1110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig1173:17337..18267- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |