mRNA_H-paniculata_contig11726.1107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11726.1107.1
Unique NamemRNA_H-paniculata_contig11726.1107.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11726.1107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11726contigH-paniculata_contig11726:5577..7950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1063
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11726.1107.1prot_H-paniculata_contig11726.1107.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11726 5737..7950 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.1565666-UTR-H-paniculata_contig11726:5576..57361622928882.1565666-UTR-H-paniculata_contig11726:5576..5736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 5577..5736 +
1691480655.3974462-UTR-H-paniculata_contig11726:5576..57361691480655.3974462-UTR-H-paniculata_contig11726:5576..5736Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 5577..5736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.2408497-CDS-H-paniculata_contig11726:5736..63031622928882.2408497-CDS-H-paniculata_contig11726:5736..6303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 5737..6303 +
1691480655.417618-CDS-H-paniculata_contig11726:5736..63031691480655.417618-CDS-H-paniculata_contig11726:5736..6303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 5737..6303 +
1622928882.2554836-CDS-H-paniculata_contig11726:7137..73141622928882.2554836-CDS-H-paniculata_contig11726:7137..7314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 7138..7314 +
1691480655.427496-CDS-H-paniculata_contig11726:7137..73141691480655.427496-CDS-H-paniculata_contig11726:7137..7314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 7138..7314 +
1622928882.266805-CDS-H-paniculata_contig11726:7791..79501622928882.266805-CDS-H-paniculata_contig11726:7791..7950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 7792..7950 +
1691480655.43561-CDS-H-paniculata_contig11726:7791..79501691480655.43561-CDS-H-paniculata_contig11726:7791..7950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 7792..7950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11726.1107.1

>prot_H-paniculata_contig11726.1107.1 ID=prot_H-paniculata_contig11726.1107.1|Name=mRNA_H-paniculata_contig11726.1107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
MVSREGKKSSVDVAKALAAAAVVTVVTVEALLHLKEDKEMSNTTETASGH
GQDQNNGGVGSQIGVGDGRQSLNESCVQKIKRKREARGFTVENDINRHGG
QQPQRPPGVVMAVADATIGDALRGVGAAGTGGSSVSASRELLWSAASSGS
TVDESREKDSLESHGASGDVGDSSSFSSFELGAERGPMEVMETKGDVACR
PSKRKKREQSGEGVGLGGSSKKAAGREGIGSGILGMRRAGRRTHAIDEAG
LSRTRVTSRKQSLRSQPEANTNECCEVTQRHAGGSSGAGRNAGNESPRKT
*
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mRNA from alignment at H-paniculata_contig11726:5577..7950+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11726.1107.1 ID=mRNA_H-paniculata_contig11726.1107.1|Name=mRNA_H-paniculata_contig11726.1107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2374bp|location=Sequence derived from alignment at H-paniculata_contig11726:5577..7950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGGAGGCGGCGGCGGCGGCAAAAGGGGTAGACAGAGGAAGGAGCGGGG
TGAGGGCCTCGTATCCGGGGGCTGGCTTCGTTGGAGGAAAAGGCGTTGGC
GGGGACGAGGGTCCTGTATAAAAGAGAACGCGTGCTAGGGCAGCTGAGGA
GCTTTCTGTCATGGTGAGTAGGGAAGGGAAGAAAAGTAGTGTGGATGTGG
CGAAGGCGCTGGCAGCGGCGGCAGTGGTGACGGTGGTGACGGTGGAGGCT
CTCCTTCATCTCAAGGAAGACAAAGAAATGTCCAATACGACGGAAACGGC
TAGTGGTCACGGTCAGGATCAGAATAACGGAGGTGTTGGTAGTCAGATTG
GAGTTGGTGATGGCCGTCAGAGCTTGAACGAGAGTTGTGTCCAGAAGATC
AAGAGGAAGCGGGAAGCGAGAGGTTTCACCGTGGAGAATGACATCAACCG
CCACGGAGGGCAGCAACCACAAAGACCGCCGGGTGTTGTTATGGCAGTCG
CCGACGCAACCATTGGTGATGCGCTGCGGGGTGTGGGCGCGGCAGGGACG
GGAGGCAGCAGTGTGAGTGCATCGAGGGAGTTGTTATGGAGCGCGGCTTC
TTCGGGGTCAACTGTGGACGAGTCGCGGGAGAAAGATAGCTTGGAAAGTC
ATGGTGCGAGCGGGGATGTGGGTGATTCTTCTTCCTTCTCTTCCTTTGAG
CTGGGCGCAGAGCGGGGGCCAATGGAGGTGTGTGTGCGTATTGTTATGAT
GTAGTCTGCGGGGTGGTGGAGTATGACACCCTGATATAGAGTTTTGTGTT
TCAATGCAATTTTTTTCTCCATGAAGAAGATTACTAATTTTTGTAGTGTA
CTTTGTGAAGATTCCGTCGATATGCGTGGACAAACTGTCGACGTCGCGTT
TCCAAACTAGTTTATTGTAGTGTAGTGCGGCCGCAACTCTTGGTTGTGTC
GCTATGTAAGGGGACCGTTATGTAACACCGTGTTATTGGAGGACATGGAG
TTCGAAAATACAACACCGGTGGTATTTTCCTACGGGGCAGTGGTATTGAC
GGTAAATTAGAGTATCAAATGAGGACTTGTAGTACACTTGCACACTAGTC
AGCCGCTAAGTTGGGTCGTATAATCTTGTGCACATATATATATACACACA
CACACATATTCTCCAATTCTACAGTGGAGGTGCCATAATTGATAATGGTG
CCACGACTTGACTGTATAGTCTACGTGGTTTGTTCTCGTCTCATGCTCAA
TGCACATTCGCTTGCACGCGGGAATGGTGTGCATGCTAAAAGTTACCCTA
GTACTGACTTGAAAACTGATCCGAAACGACGGTCACCTCAGCGTATCACA
TAGTATCGCTTTTGGGGGACAATGGGTTCGGTTGTGCTAGTAGGTAGGCC
AGAGCAAAAGCCATCACCACTGGTGCGTGGTAGTTTTGAAAAACACAGTT
GGCTAGAGAATGGGAACTGTTTCAAGGGTAACATCGTCATCATCACCATC
TTGACCGTAGTCATTAACTAAATTCTAGTGTATTTTTTTACTTGCGGTTT
GGGTAGAGCAGGTTATGGAGACTAAAGGCGACGTTGCTTGTCGCCCTAGC
AAGAGGAAGAAGCGCGAGCAGTCGGGGGAAGGTGTGGGCTTAGGTGGGAG
CAGCAAGAAAGCTGCTGGTCGCGAGGGAATCGGAAGTGGGATTCTCGGTA
TGCGGAGGGCAGGGAGGAGGACCCACGCAATCGACGAGGTGTGCTGATTT
GGCGACGTTTGGGTAGTTACTGCTCGGACTAAAGTACCTTAGTTGTTGTG
CTCGACTCACGGGTGGCTTACCTGCACGCGTCTTGAAAAGCAAACTCCTT
CACGTATAGCTCCTCCCTGTAGTGCTCGGCTTCCGAGGTGTCCCTTGTGC
TTACAGATTCAGTAATGAGCACCTCACGCACGTGTCCCCTTTTCCCCTGC
CGTGATCCAATTTCTACATTTTGAAGAGTAAGTAAACCCAATTCTATTTG
TTCGCTTCATTCAGTCAGCCTTGTGTGCGGCGTGGGTTGTAATTTGTGTT
GAAACAAAACACGTGTGAGCGTTATCGAAGATCGCAAACAGTACACCTAA
CCGCTAACAGTGTCCCACCCTATCCACCTCCTACCCCCTCACTAAATACC
ATTTGCGCGTTTCTTTGCGCACGGCTCTTGACAACTTCAAATTCGCTGCC
ACCAACAAACCTCAGGCTGGGCTATCACGAACGCGGGTAACATCTCGAAA
ACAATCCCTTCGAAGCCAACCTGAGGCAAACACCAACGAGTGCTGCGAAG
TCACACAGCGGCATGCGGGCGGCAGCTCAGGAGCAGGACGGAACGCCGGA
AATGAATCCCCTAGAAAAACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11726:5577..7950+

>mRNA_H-paniculata_contig11726.1107.1 ID=mRNA_H-paniculata_contig11726.1107.1|Name=mRNA_H-paniculata_contig11726.1107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig11726:5577..7950+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAGTAGGGAAGGGAAGAAAAGTAGTGTGGATGTGGCGAAGGCGCT
GGCAGCGGCGGCAGTGGTGACGGTGGTGACGGTGGAGGCTCTCCTTCATC
TCAAGGAAGACAAAGAAATGTCCAATACGACGGAAACGGCTAGTGGTCAC
GGTCAGGATCAGAATAACGGAGGTGTTGGTAGTCAGATTGGAGTTGGTGA
TGGCCGTCAGAGCTTGAACGAGAGTTGTGTCCAGAAGATCAAGAGGAAGC
GGGAAGCGAGAGGTTTCACCGTGGAGAATGACATCAACCGCCACGGAGGG
CAGCAACCACAAAGACCGCCGGGTGTTGTTATGGCAGTCGCCGACGCAAC
CATTGGTGATGCGCTGCGGGGTGTGGGCGCGGCAGGGACGGGAGGCAGCA
GTGTGAGTGCATCGAGGGAGTTGTTATGGAGCGCGGCTTCTTCGGGGTCA
ACTGTGGACGAGTCGCGGGAGAAAGATAGCTTGGAAAGTCATGGTGCGAG
CGGGGATGTGGGTGATTCTTCTTCCTTCTCTTCCTTTGAGCTGGGCGCAG
AGCGGGGGCCAATGGAGATGGTGAGTAGGGAAGGGAAGAAAAGTAGTGTG
GATGTGGCGAAGGCGCTGGCAGCGGCGGCAGTGGTGACGGTGGTGACGGT
GGAGGCTCTCCTTCATCTCAAGGAAGACAAAGAAATGTCCAATACGACGG
AAACGGCTAGTGGTCACGGTCAGGATCAGAATAACGGAGGTGTTGGTAGT
CAGATTGGAGTTGGTGATGGCCGTCAGAGCTTGAACGAGAGTTGTGTCCA
GAAGATCAAGAGGAAGCGGGAAGCGAGAGGTTTCACCGTGGAGAATGACA
TCAACCGCCACGGAGGGCAGCAACCACAAAGACCGCCGGGTGTTGTTATG
GCAGTCGCCGACGCAACCATTGGTGATGCGCTGCGGGGTGTGGGCGCGGC
AGGGACGGGAGGCAGCAGTGTGAGTGCATCGAGGGAGTTGTTATGGAGCG
CGGCTTCTTCGGGGTCAACTGTGGACGAGTCGCGGGAGAAAGATAGCTTG
GAAAGTCATGGTGCGAGCGGGGATGTGGGTGATTCTTCTTCCTTCTCTTC
CTTTGAGCTGGGCGCAGAGCGGGGGCCAATGGAGGTTATGGAGACTAAAG
GCGACGTTGCTTGTCGCCCTAGCAAGAGGAAGAAGCGCGAGCAGTCGGGG
GAAGGTGTGGGCTTAGGTGGGAGCAGCAAGAAAGCTGCTGGTCGCGAGGG
AATCGGAAGTGGGATTCTCGGTATGCGGAGGGCAGGGAGGAGGACCCACG
CAATCGACGAGGTTATGGAGACTAAAGGCGACGTTGCTTGTCGCCCTAGC
AAGAGGAAGAAGCGCGAGCAGTCGGGGGAAGGTGTGGGCTTAGGTGGGAG
CAGCAAGAAAGCTGCTGGTCGCGAGGGAATCGGAAGTGGGATTCTCGGTA
TGCGGAGGGCAGGGAGGAGGACCCACGCAATCGACGAGGCTGGGCTATCA
CGAACGCGGGTAACATCTCGAAAACAATCCCTTCGAAGCCAACCTGAGGC
AAACACCAACGAGTGCTGCGAAGTCACACAGCGGCATGCGGGCGGCAGCT
CAGGAGCAGGACGGAACGCCGGAAATGAATCCCCTAGAAAAACTTGAGCT
GGGCTATCACGAACGCGGGTAACATCTCGAAAACAATCCCTTCGAAGCCA
ACCTGAGGCAAACACCAACGAGTGCTGCGAAGTCACACAGCGGCATGCGG
GCGGCAGCTCAGGAGCAGGACGGAACGCCGGAAATGAATCCCCTAGAAAA
ACTTGA
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