mRNA_H-paniculata_contig11726.1106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11726.1106.1
Unique NamemRNA_H-paniculata_contig11726.1106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A1V9YAQ6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAQ6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.450e-23
Identity = 66/186 (35.48%), Postives = 100/186 (53.76%), Query Frame = 1 
Query:   19 KCGHCSTHVESFQSLSVCLSDGVNSVFEGVSDYFASTESMTSKRGSQWSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMIL--------PVFEQSENVDYRLTGVIVHEEVGKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTRKSPAPQIP 552
            KC H S   E +  LS+ +S G++++  G   +F + E++  +    W C  C +R    K  ++    NAL++HLKRF++       K+ +H++F E + L        P  +  +   Y+LTGV+VH  +  +CGH YA+V S  G WFE ND  V  V +  VL   AY+LFYTR+S  PQ P
Sbjct:  218 KCKHVSERTEPYLDLSLEISSGISTI-SGALRHFTAVETLDVENA--WKCSGCSQRSRASKGLSIETVPNALVLHLKRFDVFHG----KLKKHVAFDESLDLNLGGTVLSPKCKDKKLARYKLTGVLVHSGMSPDCGHYYAFVKSPAGQWFEMNDECVRMVQLQTVLSQRAYMLFYTRES-VPQPP 395
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A1V9YX79_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YX79_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.490e-23
Identity = 68/198 (34.34%), Postives = 104/198 (52.53%), Query Frame = 1 
Query:    4 IRGTKKCGHC---STHVESFQSLSVCLSDGVNSVFEGVSDYFASTESMTSKRGSQWSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMIL--------PVFEQSENVDYRLTGVIVHEEVGKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTRKS-PAPQIPSVK 561
            +R   KC  C   S  +E +  LS+ +S G++++ E    +F + E + ++    W C  C +R    K  ++    NAL++HLKRF++       K+ +HI+F E + L        P     +   Y+LTGV+VH  +  +CGH YA+V S  G+W+E ND  V  V +  VL   AY+LFY R+S PAP I   K
Sbjct:  207 LRSYVKCAKCKFVSERIEPYLDLSLEISSGISTI-ENALRHFTAVEKLDAENA--WMCSGCSQRSRASKGLSIQTVPNALVLHLKRFDVFHG----KLKKHITFEETLDLNLGGTVLSPTCPDKKYTKYKLTGVLVHSGMSSDCGHYYAFVKSPAGLWYEMNDECVSMVQLQTVLKQRAYMLFYIRESVPAPPITETK 397
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A067CQM2_SAPPC (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQM2_SAPPC)

HSP 1 Score: 110 bits (276), Expect = 4.630e-23
Identity = 66/199 (33.17%), Postives = 107/199 (53.77%), Query Frame = 1 
Query:   19 KCGHCSTHVESFQSLSVCLSDGVNSVFEGVSDYFASTESMTSKRGSQWSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMILPV--------FEQSENVDYRLTGVIVHEEVGKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTR----KSPAPQIPSVKNSSHGE 579
            KC + S  +E F  LS+ +S G++++   +  +F + E++ ++    W C  C +R    K  ++    NAL++HLKRF++       K+ +HI+F + + L +          + +   Y+LTGV+VH  +  +CGH YA+V S  G WFE ND  V  V +  VL   AY+LFYTR    K+PAP+ P +   +  E
Sbjct:  216 KCKYVSERLEPFLDLSLEISSGISTIANALR-HFTAVETLDTENA--WKCSGCSQRSRASKGLSIHSVPNALVLHLKRFDVFRG----KLKKHIAFDDVLDLNLGGSVLSAKCAEKKLARYKLTGVLVHSGMSPDCGHYYAFVKSPAGQWFEMNDESVRMVQLQTVLSQRAYMLFYTRDVVPKAPAPEPPPLPTKAVAE 407
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: K1QND6_CRAGI (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Crassostrea gigas TaxID=29159 RepID=K1QND6_CRAGI)

HSP 1 Score: 90.1 bits (222), Expect = 6.040e-16
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 1 
Query:  166 CEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMILPVFEQS---ENVDYRLTGVIVHEEVGKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTR 528
            C  C ++V   K +++ KP N L V LKRF+  S  +  K+ RH+ F E + L  +  +   E + + L  V+VH     N GH Y YV ++ G W+  ND  V+QV V +VLGA AY+LFYT+
Sbjct:  279 CNRCKQKVPALKRFSVHKPPNVLTVSLKRFDY-SKMVQGKIGRHVHFPEKLNLRPYMSNRGGEPILFHLNAVLVHSGYTANSGHYYCYVKASSGSWYCMNDSNVQQVSVNRVLGAEAYVLFYTK 401
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A7M7SYB0_STRPU (USP domain-containing protein n=4 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7SYB0_STRPU)

HSP 1 Score: 79.3 bits (194), Expect = 2.360e-12
Identity = 44/133 (33.08%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:  160 WSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMIL-PVFEQSEN--VDYRLTGVIVHEEVGKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTRKSPAPQI 549
            + C+ C ++V   K + + +  N L + LKRFE +   +  K+ + +S+ E + L P   +++   V Y+L  V+ HE    N GH Y YV +    W+  ND  V Q  + +VL   AY+LFY RK P P +
Sbjct:  313 YQCKRCNRKVLAQKRFTIHRCPNILTLCLKRFEFNRFSMG-KINKEVSYSEYLNLRPFMSETKGPAVGYQLYAVLKHEGGSCNSGHYYCYVRAPNQSWYCMNDSYVSQCSLNRVLNQNAYVLFYIRKPPKPNV 444
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A6P6FKU1_ZIZJJ (ubiquitin carboxyl-terminal hydrolase 15 n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6FKU1_ZIZJJ)

HSP 1 Score: 75.1 bits (183), Expect = 5.280e-11
Identity = 51/181 (28.18%), Postives = 90/181 (49.72%), Query Frame = 1 
Query:   19 KCGHCSTHVESFQSLSVCLSDGVNSVFEGVSDYFASTESMTSKRGSQWSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMILPVFEQSENVD--YRLTGVIVHEEV--GKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTRKSPAPQI 549
            +C H S   E+F  L++ +   V S+ + ++  F + E +  +  + + C  C   V   K   + +  N L + LKRF+    G   K+ + I+F + + +  F    ++   Y L  V+VH +       GH  +YV   +G WF  +D +V++V +++V+   AY+LFY R  P PQI
Sbjct:  584 RCQHESERYENFMDLTLEIFGWVESLEDALTQ-FTTPEDLDGE--NMYRCGRCATYVQARKQLRIQEAPNILTIVLKRFQEGRYG---KINKCITFPDMLDMIPFMTGTDIPPLYMLYAVVVHLDTQNASFSGHYVSYVKDLRGNWFRIDDTEVQRVPMSQVMSEEAYILFYMRSWPRPQI 758
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A2K3N1T2_TRIPR (Ubiquitin carboxyl-terminal hydrolase 15-like protein n=4 Tax=Trifolium TaxID=3898 RepID=A0A2K3N1T2_TRIPR)

HSP 1 Score: 73.9 bits (180), Expect = 6.240e-11
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 1 
Query:   22 CGHCSTHVESFQSLSVCLSDGVNSVFEGVSDYFASTESMTSKRGSQWSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCE--DMILPVFEQSENVD--YRLTGVIVHEEV--GKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTRKSPAPQI 549
            C H S   E+   L++ +   V S+ + ++  F S E +     + + C  C   V   K  ++ +  N L + LKRF+    G   K+ + I+F E  DMI P    + ++   Y L  V+VH +       GH  +YV   +G WF  +D +V+ V V +V+   AY+LFYTR  P PQ+
Sbjct:   42 CSHESERYENIMDLTLEILGWVESLEDALAQ-FTSPEDLDGD--NMYRCGRCTAYVRARKQLSIHEAPNILTIVLKRFQEGRYG---KINKCITFPEMLDMI-PFMTGTGDIPPLYALYAVVVHLDTLNASFSGHYVSYVKDLQGNWFRVDDTEVQPVLVNQVMSEGAYILFYTRSYPRPQV 216
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A8K0GYG6_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0GYG6_9ROSA)

HSP 1 Score: 72.0 bits (175), Expect = 5.370e-10
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 1 
Query:   19 KCGHCSTHVESFQSLSVCLSDGVNSVFEGVSDYFASTESMTSKRGSQWSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCE--DMILPVFEQSENVD--YRLTGVIVHEEV--GKNCGHCYAYVLSAKGVWFEKNDCKVEQVDVTKVLGA*AYLLFYTRKSPAPQI 549
            +C H S   E+F  L++ +   V S+ + ++  F + E +  +  + + C  C   V   K  ++ +  N L + LKRF+    G   K+ + I+F +  DMI P      ++   Y L  V+VH +       GH  +YV   +G WF  +D +V+ V V +V    AY+LFY R  P PQI
Sbjct:  608 RCQHESERYENFMDLTLEIFGWVESLEDALTQ-FTTPEDLDGE--NMYRCGRCATYVRARKQLSIHEAPNILTIVLKRFQEGRYG---KINKCITFPDMLDMI-PFMTGMGDIPPLYLLYAVVVHLDTQNASFSGHYVSYVKDLRGNWFRIDDTEVQPVPVNQVTSEEAYILFYMRSWPRPQI 783
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: A0A1R2CKV5_9CILI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CKV5_9CILI)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-9
Identity = 41/132 (31.06%), Postives = 75/132 (56.82%), Query Frame = 1 
Query:  157 QWSCEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMILPVF-EQSENVDYRLTGVIVHEEVGKNCGHCYAYVLSAKGV-WFEKNDCKVEQVDVTKVLGA*AYLLFYTRKSPAPQ 546
            ++ C  CG++  + +   + KP NAL++ +KRF+ + AG+  K++ ++ F   + L  F  ++ +  Y+LTG+I H   G N GH  +Y  + K   W+E +D +  Q+   ++L   AY+LFY R+   P+
Sbjct:  319 KFECLNCGEKTPSRREVKILKPPNALMLVIKRFKYNKAGM--KISTYVQFPMTIDLRFFLSRNTSCQYQLTGMIQHMG-GVNGGHYVSYCKNFKNNNWYEYDDSRTRQITEQQLLEKEAYILFYQRQILEPR 447
[Close]
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Match: UPI000E703301 (ubiquitin carboxyl-terminal hydrolase 2-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E703301)

HSP 1 Score: 67.0 bits (162), Expect = 1.100e-8
Identity = 46/142 (32.39%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:  166 CEECGKRVNTHKIYALAKPGNALIVHLKRFEMDSAGLP*KVTRHISFCEDMILPVFEQ-----SENVDYRLTGVIVHEEVGKNCGHCYAYVLSAKG----------VWFEKNDCKVEQVDVTKVLGA*AYLLFYTRKSPAPQ 546
            C+ C        I  +  P   L + LKRF  ++     K+  HI F E   L  +       S+ ++Y L GV+VHE    N GHC+AYV   K            W+  ND  V +V + +VL + AY+LFY +++ APQ
Sbjct:  160 CDRCCCTGGNKSIRVICAP-LILTISLKRFNAENK----KINDHIIFEETFDLRAYMDDRYVGSDKLEYHLIGVVVHEG-SVNTGHCFAYVRGDKSGGSKEDNEDFTWYCLNDLVVREVSLGEVLQSQAYMLFYEKRTSAPQ 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11726.1106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A1V9YAQ6_9STRA1.450e-2335.48Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Achl... [more]
A0A1V9YX79_9STRA2.490e-2334.34Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Thra... [more]
A0A067CQM2_SAPPC4.630e-2333.17Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Sapr... [more]
K1QND6_CRAGI6.040e-1639.52Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Cras... [more]
A0A7M7SYB0_STRPU2.360e-1233.08USP domain-containing protein n=4 Tax=Strongylocen... [more]
A0A6P6FKU1_ZIZJJ5.280e-1128.18ubiquitin carboxyl-terminal hydrolase 15 n=2 Tax=Z... [more]
A0A2K3N1T2_TRIPR6.240e-1130.77Ubiquitin carboxyl-terminal hydrolase 15-like prot... [more]
A0A8K0GYG6_9ROSA5.370e-1030.05Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A1R2CKV5_9CILI1.940e-931.06Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Sten... [more]
UPI000E7033011.100e-832.39ubiquitin carboxyl-terminal hydrolase 2-like n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11726contigH-paniculata_contig11726:43..5558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1076
Cds size636
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11726.1106.1prot_H-paniculata_contig11726.1106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11726 4094..5558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.0554225-UTR-H-paniculata_contig11726:42..2611622928882.0554225-UTR-H-paniculata_contig11726:42..261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 43..261 +
1691480655.327609-UTR-H-paniculata_contig11726:42..2611691480655.327609-UTR-H-paniculata_contig11726:42..261Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 43..261 +
1622928882.0735135-UTR-H-paniculata_contig11726:2107..22561622928882.0735135-UTR-H-paniculata_contig11726:2107..2256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 2108..2256 +
1691480655.3427608-UTR-H-paniculata_contig11726:2107..22561691480655.3427608-UTR-H-paniculata_contig11726:2107..2256Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 2108..2256 +
1622928882.087521-UTR-H-paniculata_contig11726:4021..40931622928882.087521-UTR-H-paniculata_contig11726:4021..4093Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 4022..4093 +
1691480655.3511648-UTR-H-paniculata_contig11726:4021..40931691480655.3511648-UTR-H-paniculata_contig11726:4021..4093Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11726 4022..4093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928882.1002305-CDS-H-paniculata_contig11726:4093..41271622928882.1002305-CDS-H-paniculata_contig11726:4093..4127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 4094..4127 +
1691480655.3625877-CDS-H-paniculata_contig11726:4093..41271691480655.3625877-CDS-H-paniculata_contig11726:4093..4127Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 4094..4127 +
1622928882.1106398-CDS-H-paniculata_contig11726:4956..55581622928882.1106398-CDS-H-paniculata_contig11726:4956..5558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 4957..5558 +
1691480655.3795092-CDS-H-paniculata_contig11726:4956..55581691480655.3795092-CDS-H-paniculata_contig11726:4956..5558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11726 4957..5558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11726.1106.1

>prot_H-paniculata_contig11726.1106.1 ID=prot_H-paniculata_contig11726.1106.1|Name=mRNA_H-paniculata_contig11726.1106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=212bp
MVREERLQSGAGRRHKGSWSIGVLAVLHAQVSGTTNSECEELVARRRPGV
PHPSGGGPRRRGARREAIGAQWIQPCFCFCDNSGSGRGGDRVRVSCRRRQ
WWGGSDHTEATGGQHTGGPTNVSTAPVAGSTLGDPPATPNEGAQNNGFKA
YSSSSIGLGVEEGVGRWGVSQAGSTAISGMGAKQQVDPATVGSSDPLDEG
VNLTPAGECDGG
back to top

mRNA from alignment at H-paniculata_contig11726:43..5558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11726.1106.1 ID=mRNA_H-paniculata_contig11726.1106.1|Name=mRNA_H-paniculata_contig11726.1106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5516bp|location=Sequence derived from alignment at H-paniculata_contig11726:43..5558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATAAGGGGGACGAAGAAGTGCGGACATTGCAGCACCCATGTGGAGTC
TTTCCAGTCGCTTTCGGTTTGTTTGTCTGACGGGGTCAACTCGGTCTTTG
AGGGCGTGTCAGACTATTTTGCGTCCACAGAGAGTATGACTTCGAAGCGC
GGAAGCCAGTGGAGCTGCGAGGAGTGCGGAAAGAGGGTGAACACTCACAA
AATTTACGCTCTAGCGAAGGTGGGAGTTTGGTGATGATGATAATGATAAT
CGTTTTGAATTGATATGGTACTGAGCACGATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGACAACGATAGCGTTTGT
CTCGAAACAGTTTTCATTCTCTATCCAAGTTATTTCTCAAAGTGTCACGT
GACGTGGAACAGTTTGAGGAGGGTCTAAGTTAGGTACGCGATGTGACATA
CAATGGCCGTGACCTGTCTGTATCCTTCACACAGCACACTTTCAGGCAAT
ATGTCCCTCAGTCCGTCCGTCCGTATGTATGTATGTATATAGTATTTAGA
GGTAAGTGTGCGTGTCAAGAGACAGTCCCTATTAACTATTTGACTCTTGG
GGACCTGTAGTGTGACAGTCTGTGACATGCGAAATTTCGCAGTCCCATGT
TCCAAGATGGGCAAGGGGTGCATTTTGATGCGGGGGGTGGAGGGATACCG
ATTTGAGACGGACGAAAGTGATGTCGACGGGCATGACATCATACCGGTGT
ACCACGAAATAAATAATACCCAGGGACCCTCGCGGCGAAAGGGGTGAAAG
GGACCACTTTTGTTTCCAACCATTGCACGTCCACGACTGATTTGCTGCAG
CTGCACAGCTGTGTACTTATTGCTTGTCTTGATTTCTTACTGTGTTTCAA
GAGAAGTTAGGCGCGTGGGGGGAGGCTGGTGTGAAGGCGGAGGGGGCGCA
CGTTTCACACGTTGATACTACCGTTGAAGCAACACCGATTTGAACGACAC
GTCGTAATACAAGGGTGTTGCTTTATATGATGGAAGATGGAAGAAAATAA
CGACAAAAAAACAGAAAGATGTGCCGGTCGAGCAGGGCCTGGTCAAACAC
TGGTGCAGAGAACAGGTGTACACAATAAGATGGGGATAAGGCGATCTTGT
CCCCAGATCATATAATTTTTCTTGATTTTGGAAAAACACTAGAGTAACAG
CCTTTCCACCGGTACGTTTGCGGAAGGGGAGGTCGCGGTGAGTCCCACAA
CGTGTGCGATGGTATTTCATTTTGAAGTGACCCTTAATATGGACACGCTG
TTTTTGTGTCTATTTTTTAATGTCACATGCGCCTTACTGAAGCAGGTGTA
TCTATTAGTTCACCTCTTTTTATTGCCACATCGGATGCTATGTCTTGATG
CTGGCTTTCATGAGATATATATTCAGAGTCCTCGAATAGCTCGTAGCTCC
CATAGACGAGGATATCACACGCGAGATGGCTCAAGCGTCCCTTAGTAGGA
ACACTTACCTCCATGTATGTAGGATGTATGTATTATCCAGATTCACCGAT
GGGTGGTACAGAGCCGTCAACACAGCTACAATGCCCCTCCAGCCAGTGTT
GTGTCCTCGACCCACGCACAAGGACTCTCCGCTGCATGTGCCCGAGAGGA
TGATACAATGGACACAACAGATGTCCGTGAAGATTCGTTTTCAGAGGTTC
CTTATGTTTTGTGTAAGCAGAGAAAGACTTGAACAAGGTTCCCGAAGCGA
CTAAATATTGTAGGTTCATCGACCACCACCATCACTTTTTTTCTGTTTTT
TCGACAAACGATATTAAAAAGGGTTTGTTTGTTTATCCTCACGAACGTTT
ATGTGGTATCGAACAATAAATTTATTGTCCCTTTCTACGGAATACTTCAT
AATTATTTGTTGTTGCTTGGTACATCTATAATCCTTAAATAGGGATGGAC
AACGAAATTGCGACTAATGTTGATAAGTCAACTATTTTTATTAGCTGAAC
GTTCATCCATTGATCGCCTCGCACCTCATCTTCCCCCGGCTTCCGCCTGT
TTCGCTTATGAATAGCCGGGGAATGCTCTGATCGTTCACCTCAAGAGGTT
CGAGATGGATTCGGCGGGCTTGCCGTAGAAAGTGACGCGGCATATCTCGT
TCTGCGAAGATATGATTCTCCCGGTGTTCGAACAGTCGGAAAACGTGGAC
TACAGATTGACAGGGTGAGTCGCAGCTCGCGGTACGTGACATTGGATACA
GTCAACGGTCAACAGGTCACGCCCCGGGCAAGTATTGAGTCAAGTAAACC
AACCTAAGTACAAATTCTCAAAACCGCTCTTCACAGGGAAAAAACTGTTT
CGACAGCGGTATGGAGGAATGAGCACGGACACTGTCCGCTCTTCCGCTTG
GTTGGCGTCAAGCACAGTCGGGAGAAAAATCTAAGAACAGTTAACCTGAT
TAGACAAAAACCAAGTGATTGTCTTGTCAACTAAATAGGTGTCCGGGGCG
GGGCGTACAACAGTCTCAGTAAGTACTCTATTAATACTAGTACAAAAAAA
ATAGGGAATTTGATGTGTGTGGCAGGTCACATTTTGTATGATGGACATAA
TGGAACTGAATTCATTTACATTAAACGATGAACGCAAACCCTTCCCTGTT
AATAAGAACCTGGCAATCAGTCTGTCAGTCAGTCAGGCCATATTTTATGG
GACGGATTCGGATTTCAGAGGTCACACGAATCTGGGCAAATACGAAATGG
GCGGATCCTAGACAGGCAAATCCGTACGGGCTATCTTATGACAAAAATTA
GGCTCTTCCAGGGTCTGTGTCAGACGGTTTCGTTGGTGTATTTTGATGAG
AGCAGAAGATGAAGTTGTCTTGTTGTGTCATCAAACACTACTGCATAGTT
CGACAATGGCGACGACGCGGCGCCGAGCCCGCTAACTTTTGCTGGAAAGA
CGTGCTCACGGGCAACATGTGTCTCTCAGGGACCTACTCCCAACCCTGAC
GGTATCGGGAGCTAAGCAAACGAGAGATAGGAAAAAGTAGAAAATGTGGC
GACTATCCGCACTAGTAGCACATCAGAGTACACTACAGCAAGTACAATGT
GGGAAGTTTTTCGCAGTTGCTCCATTTGTGGTACCATTAAACATGGATAG
GTATCTCGACAATCACAGCGACGCGTCGACCGCGGCAACGTTTTCCGGAA
AGCCCCGTTCACGGGCAGTATTTATCTCCTGGGCACCTACCTCCAGCCCC
GACGGTATCGGGAGCTGGGTGCATTAACGACAGATTGAAAAATGAAAACG
GCGACTGCTTTGGCAACAGCACAAACTACAGTCGGATGTTAATTTTGTGG
ATCCTTGGTAGGCCACTAAGCACTGTATTTCATTGCTAGACAAGTAGACA
ATCACGACGCCTTTTCCCACAAGACCAGAATCTTTGAAAGAACGACTTAG
AACGTGTCACAACATGGTAGTCTCATTGGCCTACCCCCTCTGTCCTTGCA
CCGTGAGTATATATGCACCCAAACCAAATTTGGCGCCACTCCTTTAACAG
CCCAGCTCACGACACTAAGGCCTCTTTAGCGACCAGAACGCTGACATACG
CGAGGCCCAAAGCATGACAGATCCGGTGCTCAAATGCAAAAAATCGCGTC
ACTTTTCTCGTTGTAGATCTCGAGATATGGCGTCGGATCAAATCCTACGT
CACTTAGTAGAATGTTGTTCATTTTTGTTGTTATCTGTTACTCCTTTTCT
TACATGACCAGCTGCAGCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCGTTATCGTTTGGTGCTTCCTTTTTCATTTGCTGCAATCCCTCACATGT
ACTACCACACGTTCCGAACGGGGAGGTTGTTTCTGTGCTTGGTCATCTTG
ATCACATTGATTGATACTTGCATGTTTATTTTCGTGAATGTTTCTGATCT
TACCCTACTGTTTCTATGTGTCTCGTCAGGGTCATAGTTCATGAGGAGGT
GGGTAAAAATTGCGGGCATTGTTATGCCTACGTGCTTTCGGCGAAAGGAG
TATGGTTCGAGAAGAACGACTGCAAAGTGGAGCAGGTGAAGCTAAGCTTA
CGATCGCAGAAGAGCAGAAACAATCAGCAGGAGTACGGCAAGCTGATTTG
TAGGATAACTCTTGGCGAAGTCAATATTTGGATTAGAGTGCGATTAACAC
ATGGACCTATGACCAATCAGTCAAGTACGATTCGGCTCTCATTTTCATTT
TTCTTTTTCTCTTGGTTCCGCGGCATGGGGATTTCGACTGGGAGGGGAAA
TTTTCGGATTTGATGGACAGCAAAATGTGAAAGTCGCTCATAATTGTAGT
TCTTGGGGGCGTACTGATGTACTGTTTGTTCTCGGCACGGCAAGTTGTGA
CGGCTTTTCGTAGCATGTTTTTATTGCAATACCCTCGGTTTCCTTGTACA
GGCAACGCACCAGGAAACTGTTGTGTACCGTGTAGACGGAATGAAATCTT
TTCGGACGTGTTCATCTTGTATCTTTGGTTGATCTGTATACCGTCGCGCA
GGTACGGAACACGCACAGACATACGACACGAGAGTCATGAATTGCCTCCC
CGCCGTGCCTCTTGAGTCGTAGGGCGCGGGTTGCTGTAGATACGATGAGG
AAACAAATAAAAACTAGTCGAAGTGTGGCAGAATAGGAAGGAGCGATTGA
TCAGCGGCGATCGATTGCTCGTGTGGGACCAAACCAAGCGCCCGTCCTGT
CGAGATCGCATCATCAATGGTGTAGCAACTGAGACATGCAAAACGGGAGC
ACGCCCCCTCCTACCACCATGCAGTATCTTATAAGTACCCCTTCCCTCCC
GCCTTCCTCCCGGTGTGCGCCCTGCTTTCCGTCCCTGGTATGAAAACGTA
TCCGCTCCACGCAGGTCGACGTCACAAAGGTTCTTGGAGCATAGGCGTAC
TTGCTGTTTTACACGCGCAAGTCTCCGGCACCACAAATTCCGAGTGTGAA
GAACTCGTCGCACGGCGAAGGCCCGGGGTCCCGCATCCCAGCGGTGGTGG
ACCTCGGCGGCGAGGAGCTAGGCGAGAGGCTATTGGGGCACAGTGGATCC
AGCCCTGCTTCTGTTTCTGTGACAACAGCGGCAGTGGCAGGGGTGGCGAC
CGCGTCAGGGTCTCCTGTCGACGGCGCCAATGGTGGGGGGGTAGCGACCA
CACCGAGGCAACGGGTGGACAGCACACAGGAGGTCCCACTAACGTCTCTA
CGGCTCCCGTAGCTGGGTCCACTTTAGGCGACCCGCCGGCGACACCGAAC
GAAGGTGCACAAAACAATGGCTTTAAGGCGTACTCGTCAAGTTCTATCGG
CCTAGGTGTCGAAGAGGGTGTTGGACGGTGGGGCGTCTCCCAGGCGGGCA
GCACAGCTATCTCAGGTATGGGTGCCAAGCAACAGGTAGACCCCGCAACC
GTAGGTAGTAGTGATCCGCTCGACGAGGGGGTCAACCTTACTCCAGCGGG
GGAGTGCGATGGGGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11726:43..5558+

>mRNA_H-paniculata_contig11726.1106.1 ID=mRNA_H-paniculata_contig11726.1106.1|Name=mRNA_H-paniculata_contig11726.1106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1272bp|location=Sequence derived from alignment at H-paniculata_contig11726:43..5558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCGAGAAGAACGACTGCAAAGTGGAGCAGATGGTTCGAGAAGAAC
GACTGCAAAGTGGAGCAGGTCGACGTCACAAAGGTTCTTGGAGCATAGGC
GTACTTGCTGTTTTACACGCGCAAGTCTCCGGCACCACAAATTCCGAGTG
TGAAGAACTCGTCGCACGGCGAAGGCCCGGGGTCCCGCATCCCAGCGGTG
GTGGACCTCGGCGGCGAGGAGCTAGGCGAGAGGCTATTGGGGCACAGTGG
ATCCAGCCCTGCTTCTGTTTCTGTGACAACAGCGGCAGTGGCAGGGGTGG
CGACCGCGTCAGGGTCTCCTGTCGACGGCGCCAATGGTGGGGGGGTAGCG
ACCACACCGAGGCAACGGGTGGACAGCACACAGGAGGTCCCACTAACGTC
TCTACGGCTCCCGTAGCTGGGTCCACTTTAGGCGACCCGCCGGCGACACC
GAACGAAGGTGCACAAAACAATGGCTTTAAGGCGTACTCGTCAAGTTCTA
TCGGCCTAGGTGTCGAAGAGGGTGTTGGACGGTGGGGCGTCTCCCAGGCG
GGCAGCACAGCTATCTCAGGTATGGGTGCCAAGCAACAGGTAGACCCCGC
AACCGTAGGTAGTAGTGATCCGCTCGACGAGGGGGTCAACCTTACTCCAG
CGGGGGAGTGCGATGGGGGAGTCGACGTCACAAAGGTTCTTGGAGCATAG
GCGTACTTGCTGTTTTACACGCGCAAGTCTCCGGCACCACAAATTCCGAG
TGTGAAGAACTCGTCGCACGGCGAAGGCCCGGGGTCCCGCATCCCAGCGG
TGGTGGACCTCGGCGGCGAGGAGCTAGGCGAGAGGCTATTGGGGCACAGT
GGATCCAGCCCTGCTTCTGTTTCTGTGACAACAGCGGCAGTGGCAGGGGT
GGCGACCGCGTCAGGGTCTCCTGTCGACGGCGCCAATGGTGGGGGGGTAG
CGACCACACCGAGGCAACGGGTGGACAGCACACAGGAGGTCCCACTAACG
TCTCTACGGCTCCCGTAGCTGGGTCCACTTTAGGCGACCCGCCGGCGACA
CCGAACGAAGGTGCACAAAACAATGGCTTTAAGGCGTACTCGTCAAGTTC
TATCGGCCTAGGTGTCGAAGAGGGTGTTGGACGGTGGGGCGTCTCCCAGG
CGGGCAGCACAGCTATCTCAGGTATGGGTGCCAAGCAACAGGTAGACCCC
GCAACCGTAGGTAGTAGTGATCCGCTCGACGAGGGGGTCAACCTTACTCC
AGCGGGGGAGTGCGATGGGGGA
back to top