mRNA_H-paniculata_contig11722.1102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11722.1102.1
Unique NamemRNA_H-paniculata_contig11722.1102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11722.1102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11722contigH-paniculata_contig11722:2657..3571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size915
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11722.1102.1prot_H-paniculata_contig11722.1102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11722 2677..3135 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.2902808-UTR-H-paniculata_contig11722:2656..26761622928881.2902808-UTR-H-paniculata_contig11722:2656..2676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11722 2657..2676 +
1691480655.1516337-UTR-H-paniculata_contig11722:2656..26761691480655.1516337-UTR-H-paniculata_contig11722:2656..2676Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11722 2657..2676 +
1622928881.3463807-UTR-H-paniculata_contig11722:3135..35711622928881.3463807-UTR-H-paniculata_contig11722:3135..3571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11722 3136..3571 +
1691480655.1745138-UTR-H-paniculata_contig11722:3135..35711691480655.1745138-UTR-H-paniculata_contig11722:3135..3571Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11722 3136..3571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928881.328385-CDS-H-paniculata_contig11722:2676..31351622928881.328385-CDS-H-paniculata_contig11722:2676..3135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11722 2677..3135 +
1691480655.1607904-CDS-H-paniculata_contig11722:2676..31351691480655.1607904-CDS-H-paniculata_contig11722:2676..3135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11722 2677..3135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11722.1102.1

>prot_H-paniculata_contig11722.1102.1 ID=prot_H-paniculata_contig11722.1102.1|Name=mRNA_H-paniculata_contig11722.1102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MLLALAERGRRSRRRLLALRRKEARKAALLFSSPAPSSLPVSPPPVVVQE
KVPPPPLLSLDAAPADSIGTLLRLIPLPGVRRIPLSLPGVIVPRLPPLPD
VWGPPPLLLGVHPTRPRLPDVPLLTAPLCGVPTGASSRPTIDRGGGGGGG
GI*
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mRNA from alignment at H-paniculata_contig11722:2657..3571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11722.1102.1 ID=mRNA_H-paniculata_contig11722.1102.1|Name=mRNA_H-paniculata_contig11722.1102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=915bp|location=Sequence derived from alignment at H-paniculata_contig11722:2657..3571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGCTTGTTGTTGTAGGCAATGCTGCTGGCACTAGCGGAGCGGGGTCGT
CGCAGCCGTCGACGGCTGCTCGCGCTCCGGCGTAAGGAAGCGCGCAAAGC
GGCACTATTGTTCTCCTCTCCTGCTCCCTCTTCTCTGCCAGTGTCGCCGC
CACCGGTGGTCGTACAAGAGAAAGTCCCTCCTCCTCCTCTTCTCTCCCTC
GACGCCGCTCCTGCCGACAGTATTGGCACGCTCTTGAGGCTAATCCCACT
GCCAGGTGTCAGGCGCATACCGCTGTCGCTTCCTGGAGTAATAGTACCCC
GACTTCCTCCACTGCCTGACGTCTGGGGGCCTCCGCCGCTACTGCTCGGA
GTCCATCCAACCCGACCCAGACTCCCCGACGTACCTCTGCTAACCGCGCC
ACTTTGCGGTGTGCCGACAGGTGCATCATCTCGTCCCACCATCGACAGGG
GTGGGGGCGGCGGCGGCGGCGGGATATGATCATCACTCGAAGAACCCGCA
TCATCAGCGCTGCTGTCCGCCATGGACGCGGGTAAAACGGAAATCCGTGT
AGGGGTCGGAGTCCTTGACGCCCCCGTGCCGCTGAAGGCTCTAGGGCGCT
TGGTCGCGGGGCGATAGGCCGGGGAAGGGGTACTCGCTGCGCTTGGTGCC
GTCCCCGCGGGAGTACCTGGGGCTGTACCTACGCCAGCAGGGTACGCAAC
GTTGCTGCGCTGCTGGCGCTGCTGCTGCTGCTGCTGCTGCTGCCCTCCTC
CACCTCGTCCTCCTCGATCCATCTTCCCGACAAAACCGTCTCGTCGGCGA
CTTTCCTTGTTACGGTTACCGGTACTGTTACCGTCGGCGATACGCTCCCC
TCCCGCTTCATGATCCGCGCCGCCTCCACCTCCGCCGCCGCCGCCGCCCC
CGCACACACCACCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig11722:2657..3571+

>mRNA_H-paniculata_contig11722.1102.1 ID=mRNA_H-paniculata_contig11722.1102.1|Name=mRNA_H-paniculata_contig11722.1102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig11722:2657..3571+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCTGGCACTAGCGGAGCGGGGTCGTCGCAGCCGTCGACGGCTGCT
CGCGCTCCGGCGTAAGGAAGCGCGCAAAGCGGCACTATTGTTCTCCTCTC
CTGCTCCCTCTTCTCTGCCAGTGTCGCCGCCACCGGTGGTCGTACAAGAG
AAAGTCCCTCCTCCTCCTCTTCTCTCCCTCGACGCCGCTCCTGCCGACAG
TATTGGCACGCTCTTGAGGCTAATCCCACTGCCAGGTGTCAGGCGCATAC
CGCTGTCGCTTCCTGGAGTAATAGTACCCCGACTTCCTCCACTGCCTGAC
GTCTGGGGGCCTCCGCCGCTACTGCTCGGAGTCCATCCAACCCGACCCAG
ACTCCCCGACGTACCTCTGCTAACCGCGCCACTTTGCGGTGTGCCGACAG
GTGCATCATCTCGTCCCACCATCGACAGGGGTGGGGGCGGCGGCGGCGGC
GGGATATGAATGCTGCTGGCACTAGCGGAGCGGGGTCGTCGCAGCCGTCG
ACGGCTGCTCGCGCTCCGGCGTAAGGAAGCGCGCAAAGCGGCACTATTGT
TCTCCTCTCCTGCTCCCTCTTCTCTGCCAGTGTCGCCGCCACCGGTGGTC
GTACAAGAGAAAGTCCCTCCTCCTCCTCTTCTCTCCCTCGACGCCGCTCC
TGCCGACAGTATTGGCACGCTCTTGAGGCTAATCCCACTGCCAGGTGTCA
GGCGCATACCGCTGTCGCTTCCTGGAGTAATAGTACCCCGACTTCCTCCA
CTGCCTGACGTCTGGGGGCCTCCGCCGCTACTGCTCGGAGTCCATCCAAC
CCGACCCAGACTCCCCGACGTACCTCTGCTAACCGCGCCACTTTGCGGTG
TGCCGACAGGTGCATCATCTCGTCCCACCATCGACAGGGGTGGGGGCGGC
GGCGGCGGCGGGATATGA
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