mRNA_H-paniculata_contig11716.1096.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11716.1096.1
Unique NamemRNA_H-paniculata_contig11716.1096.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11716.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11716contigH-paniculata_contig11716:5192..6002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size795
Cds size750
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11716.1096.1prot_H-paniculata_contig11716.1096.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11716 5236..6002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928880.0319352-UTR-H-paniculata_contig11716:5191..52351622928880.0319352-UTR-H-paniculata_contig11716:5191..5235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11716 5192..5235 +
1691480654.9024634-UTR-H-paniculata_contig11716:5191..52351691480654.9024634-UTR-H-paniculata_contig11716:5191..5235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11716 5192..5235 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928880.054573-CDS-H-paniculata_contig11716:5235..54011622928880.054573-CDS-H-paniculata_contig11716:5235..5401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11716 5236..5401 +
1691480654.912892-CDS-H-paniculata_contig11716:5235..54011691480654.912892-CDS-H-paniculata_contig11716:5235..5401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11716 5236..5401 +
1622928880.0726316-CDS-H-paniculata_contig11716:5418..60021622928880.0726316-CDS-H-paniculata_contig11716:5418..6002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11716 5419..6002 +
1691480654.9258914-CDS-H-paniculata_contig11716:5418..60021691480654.9258914-CDS-H-paniculata_contig11716:5418..6002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11716 5419..6002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11716.1096.1

>prot_H-paniculata_contig11716.1096.1 ID=prot_H-paniculata_contig11716.1096.1|Name=mRNA_H-paniculata_contig11716.1096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MSTSMFAAWPGGPAQLSPMVFVFLTLRPIFFLLRSRAFGINNGACCCLLL
SKDMGSNSNNNNNNNNNNSTAARGSKGVSPYDRPHQRPGHSTQVSNTASV
SAAAATAASAGSIRGSIREANDKGHEERDGEWFAGGAAGGGGGSSFFSSA
RTKTEQCNRRHAMSYSFVDLGAAAAAVADADACASSPWVGSTAPRSIDGH
RAALAGAGGTKCDRLDDDCDNNDVCVRGGGGGGGGGGGFGSDRKRRLRER
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mRNA from alignment at H-paniculata_contig11716:5192..6002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11716.1096.1 ID=mRNA_H-paniculata_contig11716.1096.1|Name=mRNA_H-paniculata_contig11716.1096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=811bp|location=Sequence derived from alignment at H-paniculata_contig11716:5192..6002+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGGCTGGATGATGTTCTATGGTACCGTTAGTTGCGTTGGAGTATGTCC
ACCAGTATGTTTGCTGCATGGCCTGGCGGGCCCGCGCAGTTATCTCCCAT
GGTTTTTGTTTTTCTTACCCTCCGTCCTATATTTTTTCTCCTTCGATCAC
GCGCCTTTGGCATCAACAACGGGGCGTGCTGCTGCCTCCTACTGTCGAAA
GACATGGGGAGCGAAGACCCGGAGCAGGCAACAGTAATAACAACAACAAC
AACAACAACAACAACAGTACTGCCGCTCGCGGCTCTAAAGGAGTTTCCCC
CTACGATCGACCACATCAACGCCCGGGACACTCGACCCAAGTATCGAACA
CCGCCTCAGTATCAGCAGCAGCAGCGACAGCGGCGTCAGCGGGATCGATC
CGCGGATCGATCCGCGAGGCCAACGATAAAGGACACGAAGAACGTGACGG
AGAATGGTTCGCGGGGGGCGCGGCAGGTGGCGGGGGGGGCTCATCTTTCT
TTTCTTCAGCTCGAACGAAAACGGAGCAATGCAACCGACGCCACGCCATG
TCGTACTCTTTCGTGGACCTCGGGGCGGCTGCAGCTGCAGTTGCTGATGC
TGATGCGTGTGCTTCTTCTCCGTGGGTTGGTAGTACCGCGCCCCGAAGCA
TTGATGGACACCGCGCGGCTTTGGCTGGAGCAGGAGGGACAAAGTGTGAT
CGACTAGATGATGACTGTGACAATAACGATGTATGTGTGCGTGGTGGTGG
TGGTGGTGGCGGCGGCGGCGGCGGGTTTGGAAGCGATCGAAAGAGGAGAC
TGCGCGAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11716:5192..6002+

>mRNA_H-paniculata_contig11716.1096.1 ID=mRNA_H-paniculata_contig11716.1096.1|Name=mRNA_H-paniculata_contig11716.1096.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig11716:5192..6002+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCACCAGTATGTTTGCTGCATGGCCTGGCGGGCCCGCGCAGTTATC
TCCCATGGTTTTTGTTTTTCTTACCCTCCGTCCTATATTTTTTCTCCTTC
GATCACGCGCCTTTGGCATCAACAACGGGGCGTGCTGCTGCCTCCTACTG
TCGAAAGACATGGGGAATGTCCACCAGTATGTTTGCTGCATGGCCTGGCG
GGCCCGCGCAGTTATCTCCCATGGTTTTTGTTTTTCTTACCCTCCGTCCT
ATATTTTTTCTCCTTCGATCACGCGCCTTTGGCATCAACAACGGGGCGTG
CTGCTGCCTCCTACTGTCGAAAGACATGGGGAGCAACAGTAATAACAACA
ACAACAACAACAACAACAACAGTACTGCCGCTCGCGGCTCTAAAGGAGTT
TCCCCCTACGATCGACCACATCAACGCCCGGGACACTCGACCCAAGTATC
GAACACCGCCTCAGTATCAGCAGCAGCAGCGACAGCGGCGTCAGCGGGAT
CGATCCGCGGATCGATCCGCGAGGCCAACGATAAAGGACACGAAGAACGT
GACGGAGAATGGTTCGCGGGGGGCGCGGCAGGTGGCGGGGGGGGCTCATC
TTTCTTTTCTTCAGCTCGAACGAAAACGGAGCAATGCAACCGACGCCACG
CCATGTCGTACTCTTTCGTGGACCTCGGGGCGGCTGCAGCTGCAGTTGCT
GATGCTGATGCGTGTGCTTCTTCTCCGTGGGTTGGTAGTACCGCGCCCCG
AAGCATTGATGGACACCGCGCGGCTTTGGCTGGAGCAGGAGGGACAAAGT
GTGATCGACTAGATGATGACTGTGACAATAACGATGTATGTGTGCGTGGT
GGTGGTGGTGGTGGCGGCGGCGGCGGCGGGTTTGGAAGCGATCGAAAGAG
GAGACTGCGCGAGAGGGCAACAGTAATAACAACAACAACAACAACAACAA
CAACAGTACTGCCGCTCGCGGCTCTAAAGGAGTTTCCCCCTACGATCGAC
CACATCAACGCCCGGGACACTCGACCCAAGTATCGAACACCGCCTCAGTA
TCAGCAGCAGCAGCGACAGCGGCGTCAGCGGGATCGATCCGCGGATCGAT
CCGCGAGGCCAACGATAAAGGACACGAAGAACGTGACGGAGAATGGTTCG
CGGGGGGCGCGGCAGGTGGCGGGGGGGGCTCATCTTTCTTTTCTTCAGCT
CGAACGAAAACGGAGCAATGCAACCGACGCCACGCCATGTCGTACTCTTT
CGTGGACCTCGGGGCGGCTGCAGCTGCAGTTGCTGATGCTGATGCGTGTG
CTTCTTCTCCGTGGGTTGGTAGTACCGCGCCCCGAAGCATTGATGGACAC
CGCGCGGCTTTGGCTGGAGCAGGAGGGACAAAGTGTGATCGACTAGATGA
TGACTGTGACAATAACGATGTATGTGTGCGTGGTGGTGGTGGTGGTGGCG
GCGGCGGCGGCGGGTTTGGAAGCGATCGAAAGAGGAGACTGCGCGAGAGG
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