mRNA_H-paniculata_contig11711.1094.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11711.1094.1
Unique NamemRNA_H-paniculata_contig11711.1094.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11711.1094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11711contigH-paniculata_contig11711:2695..3991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size377
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11711.1094.1prot_H-paniculata_contig11711.1094.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11711 2697..3991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.7164226-UTR-H-paniculata_contig11711:2694..26961622928879.7164226-UTR-H-paniculata_contig11711:2694..2696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11711 2695..2696 +
1691480654.7708118-UTR-H-paniculata_contig11711:2694..26961691480654.7708118-UTR-H-paniculata_contig11711:2694..2696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11711 2695..2696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.7384815-CDS-H-paniculata_contig11711:2696..27771622928879.7384815-CDS-H-paniculata_contig11711:2696..2777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11711 2697..2777 +
1691480654.7797146-CDS-H-paniculata_contig11711:2696..27771691480654.7797146-CDS-H-paniculata_contig11711:2696..2777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11711 2697..2777 +
1622928879.753394-CDS-H-paniculata_contig11711:3103..33551622928879.753394-CDS-H-paniculata_contig11711:3103..3355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11711 3104..3355 +
1691480654.7881494-CDS-H-paniculata_contig11711:3103..33551691480654.7881494-CDS-H-paniculata_contig11711:3103..3355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11711 3104..3355 +
1622928879.771019-CDS-H-paniculata_contig11711:3949..39911622928879.771019-CDS-H-paniculata_contig11711:3949..3991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11711 3950..3991 +
1691480654.7997172-CDS-H-paniculata_contig11711:3949..39911691480654.7997172-CDS-H-paniculata_contig11711:3949..3991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11711 3950..3991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11711.1094.1

>prot_H-paniculata_contig11711.1094.1 ID=prot_H-paniculata_contig11711.1094.1|Name=mRNA_H-paniculata_contig11711.1094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MVGGGILDISSFLDPMWMRQNHGCFSQVIPETNENGREEKRGNCNSSDEP
QEDCRGRRGSVVRGTVELSIEHWVEKEQLGKGARAVAAEDGADNATGNIP
AAAIGLPATIELEVTLNSEEAMRE*
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mRNA from alignment at H-paniculata_contig11711:2695..3991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11711.1094.1 ID=mRNA_H-paniculata_contig11711.1094.1|Name=mRNA_H-paniculata_contig11711.1094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1297bp|location=Sequence derived from alignment at H-paniculata_contig11711:2695..3991+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGGTCGGTGGTGGTATTTTGGACATATCCTCGTTCCTTGATCCCATG
TGGATGCGGCAGAACCATGGATGTTTTTCACAGGTACTGCGCAAGTGCAG
TGTTTTTGGCGAAAGAGGAGCAACAGGTTCTTCAGCATGTTGTTGAACAG
TTGAATGGCAGCGATTGCTAATGACAGAAACGTCTCAAAAGGTGGCTGTT
GACGAATAGCGGTCATGAGCACCATAATAATGGTGGAAAATCCCAAGCGT
ACTACCATACGGAATCAAATGAGCATTCTCTCCCTCTTTCAGGGTATAGA
CTTCACCTCCTAGAGGACTTATGGCTCTGCCGATCGACCTCAACATAAAT
TACGGGTCCGTTCATGAACTCTTCTCTCTCATATTGTGCCACCGCGTATC
GATTACTAGGTCATACCCGAAACGAACGAGAATGGACGGGAGGAGAAAAG
GGGCAACTGTAACTCTTCTGACGAACCGCAGGAGGATTGCAGGGGGCGGC
GAGGAAGCGTAGTTAGGGGCACGGTCGAGCTCAGCATTGAACATTGGGTT
GAAAAGGAGCAGTTGGGAAAAGGAGCACGCGCGGTTGCCGCTGAGGATGG
AGCGGATAACGCTACTGGGAATATTCCGGCTGCGGCTATTGGCTTGCCCG
CCACAATAGAGGTGTGTGGGCTTACTGCATGTAACCTAGTAAAGTGTGAA
TAGGTGTTCTGCCTGCTCAGGTGCAGAGCCCAGTAAAACGATGGCAATAA
TATATTTTATGCACATCCCCGGAGTATCTGAAATTGTTCTGAAGTTTGAT
GGTCCTGTCGTGACCGAAGGCAACGAGGATGTTTAATTCTCGTACAAAAT
GATCATTATCGTGTAGAACTGGTAGCTTCTTAAGATAGCACGAACGGGGC
TGCACGAGATCAGCAATGCCTTCTCCAGGGGATCTTGACGTGACACCTGA
GCTTTCACCGATGAAAACTGTTGTGGAAACGAGGCCATTGGCACAGGATG
GAACGGTGGTCAAAACCTTATAGGAAAGGGGAATTATTTCCACTTGCACG
ATTTGCCGAGTCGTTCATATAGTACATACTGCGGTAGGAAAGAAAAGCTA
GTAACGGTTTTAATGCCAAATGTTCAGCATGTTACCATAACGAGAATGAC
TTTGCGTAGGTACGAATTCGTTGATAAAAAGAAGGTCGCTGTTTTTCACA
CCTTAGGTGACTACTTGCCCGCCCGTGTCCCTGCGTATAAACCTGTACAT
GTCAGCTGGAAGTGACGCTGAACTCCGAAGAGGCGATGAGAGAATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11711:2695..3991+

>mRNA_H-paniculata_contig11711.1094.1 ID=mRNA_H-paniculata_contig11711.1094.1|Name=mRNA_H-paniculata_contig11711.1094.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig11711:2695..3991+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGGTGGTGGTATTTTGGACATATCCTCGTTCCTTGATCCCATGTG
GATGCGGCAGAACCATGGATGTTTTTCACAGATGGTCGGTGGTGGTATTT
TGGACATATCCTCGTTCCTTGATCCCATGTGGATGCGGCAGAACCATGGA
TGTTTTTCACAGGTCATACCCGAAACGAACGAGAATGGACGGGAGGAGAA
AAGGGGCAACTGTAACTCTTCTGACGAACCGCAGGAGGATTGCAGGGGGC
GGCGAGGAAGCGTAGTTAGGGGCACGGTCGAGCTCAGCATTGAACATTGG
GTTGAAAAGGAGCAGTTGGGAAAAGGAGCACGCGCGGTTGCCGCTGAGGA
TGGAGCGGATAACGCTACTGGGAATATTCCGGCTGCGGCTATTGGCTTGC
CCGCCACAATAGAGGTCATACCCGAAACGAACGAGAATGGACGGGAGGAG
AAAAGGGGCAACTGTAACTCTTCTGACGAACCGCAGGAGGATTGCAGGGG
GCGGCGAGGAAGCGTAGTTAGGGGCACGGTCGAGCTCAGCATTGAACATT
GGGTTGAAAAGGAGCAGTTGGGAAAAGGAGCACGCGCGGTTGCCGCTGAG
GATGGAGCGGATAACGCTACTGGGAATATTCCGGCTGCGGCTATTGGCTT
GCCCGCCACAATAGAGCTGGAAGTGACGCTGAACTCCGAAGAGGCGATGA
GAGAATAGCTGGAAGTGACGCTGAACTCCGAAGAGGCGATGAGAGAATAG
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