mRNA_H-paniculata_contig1171.1093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1171.1093.1
Unique NamemRNA_H-paniculata_contig1171.1093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1171.1093.1 vs. uniprot
Match: D8LQT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT3_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 4.280e-52
Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 1 
Query:  190 AAEEPKFSVVTAGQAFSCGVLTEGGHVECWGNGALPTESPSLEALEGKIPDENHESISGGGFHVCGLYYEGEER-RSNVKAYCVASFEDGAPQDAGQLDIPLLDEGVYWREINAGGQHSCGIDSNRM 567
            A+ +  +  VTAGQ FSCGVL   G VECWG GAL  ++PSL+ LEGK+ DE+H SISGGGFHVCGLYYEG E+   NV+AYCVASF+DGA QDAGQL+IP L +G YWRE++AGGQH+CGID++RM
Sbjct:   37 ASTDAYYESVTAGQGFSCGVLEATGRVECWGEGALG-DTPSLDVLEGKLLDEHHLSISGGGFHVCGLYYEGGEKLNKNVRAYCVASFDDGAEQDAGQLNIPDLPDGKYWREMSAGGQHTCGIDTDRM 162
[Close]
BLAST of mRNA_H-paniculata_contig1171.1093.1 vs. uniprot
Match: A0A151R0B5_CAJCA (Putative serine/threonine-protein kinase-like protein CCR3 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151R0B5_CAJCA)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-6
Identity = 47/152 (30.92%), Postives = 71/152 (46.71%), Query Frame = 1 
Query:  115 MGSSTMIILALQAGLLLCARVQASAAAEEP----KFSVVTAGQAFSCGVLTEGGHVECWGNGALPTESPSLEALEGKIPDENHESISGGGFHVCGLYYEGEERRSNVKAYCVASFEDGAPQDAGQLDIPLLDEG--VYWREINAGGQHSCGI 552
            +G S +    + AG   C R   +AA E P    +FS +++G  FSCG+L     V CWG G++  +      +EG+  + +  S+  G  HVCGL         N   Y V    +    D GQ+D+P   EG  + +  +  G +HSC I
Sbjct:  118 VGDSQVCATVVGAGTASCWRT--NAAFELPSGSDRFSSISSGSGFSCGILKGSDRVRCWGVGSVARK------MEGEFGNVSMVSLVAGESHVCGL---------NSSGYLVCRGSN----DFGQIDVP---EGGALEFSGLALGAEHSCAI 245
[Close]
BLAST of mRNA_H-paniculata_contig1171.1093.1 vs. uniprot
Match: UPI0011D2439D (putative serine/threonine-protein kinase-like protein CCR3 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2439D)

HSP 1 Score: 54.3 bits (129), Expect = 3.000e-5
Identity = 37/121 (30.58%), Postives = 54/121 (44.63%), Query Frame = 1 
Query:  205 KFSVVTAGQAFSCGVLTEGGHVECWGNGALPTESPSLEALE-----GKIPDENHESISGGGFHVCGLYYEGEERRSNVKAYCVASFEDGAPQDAGQLDIPLLDEGVYWREINAGGQHSCGI 552
            +FS +++G  FSCG+     HV CWG+  +      L+A++     G +P     SI  GG H CG          N   + V     G   D+GQLD+P       +  ++ G  HSC I
Sbjct:  149 RFSSISSGFGFSCGITMNTSHVRCWGSRQI------LDAIQVQDGFGNMPMS---SIVAGGSHACGF---------NSSGFVVC----GGNNDSGQLDVPSHSS-FEFSLLSLGANHSCAI 246
[Close]
BLAST of mRNA_H-paniculata_contig1171.1093.1 vs. uniprot
Match: W9RPF0_9ROSA (Putative serine/threonine-protein kinase-like protein n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RPF0_9ROSA)

HSP 1 Score: 53.9 bits (128), Expect = 4.050e-5
Identity = 34/122 (27.87%), Postives = 54/122 (44.26%), Query Frame = 1 
Query:  196 EEPKFSVVTAGQAFSCGVLTEGGHVECWGNGALPTESPSLEALEGKIPDENHESISGGGFHVCGLYYEGEERRSNVKAYCVASFEDGAPQDAGQLDIPLLDEGVYWREINA---GGQHSCGI 552
            E  KFS ++ G  F+CGVL  G  V+CWGN  +  ++     ++    + +  S+  G  H CGL        +N    C  +       D+GQLD+P       + E ++   G   +C I
Sbjct:  155 EALKFSKISCGNGFACGVLKYGSRVKCWGNRRVDVQNE----IQSGFGNLSMSSLVAGESHACGL-------TTNGSLVCKGN------NDSGQLDVPNYSSSSAYNEFSSLALGASFTCAI 259
[Close]
BLAST of mRNA_H-paniculata_contig1171.1093.1 vs. uniprot
Match: A0A7J7DDQ9_TRIWF (Putative CRINKLY4 related 3 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DDQ9_TRIWF)

HSP 1 Score: 52.8 bits (125), Expect = 8.550e-5
Identity = 35/116 (30.17%), Postives = 53/116 (45.69%), Query Frame = 1 
Query:  205 KFSVVTAGQAFSCGVLTEGGHVECWGNGALPTESPSLEALEGKIPDENHESISGGGFHVCGLYYEGEERRSNVKAYCVASFEDGAPQDAGQLDIPLLDEGVYWREINAGGQHSCGI 552
            +FS +T+G+ FSCG+L     V CWGN  +  E   ++ L G +   N   +  G  HVCG+       R+ +   C    E      +GQLD+P       + ++  G   SC I
Sbjct:  160 RFSTITSGRGFSCGILRNNSRVSCWGNRDIGAE---IQNLIGNLTMSN---LVAGDSHVCGI------TRTGILV-CQGRNE------SGQLDVPFS-SAYEFSDLALGANFSCAI 255
[Close]
BLAST of mRNA_H-paniculata_contig1171.1093.1 vs. uniprot
Match: A0A4V6ACF6_POPAL (Protein kinase domain-containing protein n=5 Tax=Populus TaxID=3689 RepID=A0A4V6ACF6_POPAL)

HSP 1 Score: 52.8 bits (125), Expect = 9.720e-5
Identity = 48/170 (28.24%), Postives = 76/170 (44.71%), Query Frame = 1 
Query:   67 KQLYYT*TVCTRIREI-MGSSTMIILALQAGLLLCARVQASAAAEEP------KFSVVTAGQAFSCGVLTEGGHVECWGNGALPTESPSLEALEGKIPDENHESISGGGFHVCGLYYEGEERRSNVKAYCVASFEDGAPQDAGQLDIPLLDEGVYWREINAGGQHSCGID 555
            K++YY+ TV  R+ ++ +G   +    + +G++ C R      +  P      KFS +T+G  F+CG+L     V CWGN  + TE   +E   G +   N   +  G  H CGL       RS V    V    +G+    GQLD P  +    +  +  G   +C I+
Sbjct:  110 KRIYYSNTV--RLTDLTVGDVQVCAREVNSGMVKCWRGVGRGKSSFPSPGVALKFSTITSGSGFTCGILMNNSRVHCWGNSDVGTE---IERQFGNLTMLN---LVAGESHACGL------ARSGV---LVCKGSNGS----GQLDAPF-NSAFEFSALALGANFTCSIE 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1171.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQT3_ECTSI4.280e-5266.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A151R0B5_CAJCA1.070e-630.92Putative serine/threonine-protein kinase-like prot... [more]
UPI0011D2439D3.000e-530.58putative serine/threonine-protein kinase-like prot... [more]
W9RPF0_9ROSA4.050e-527.87Putative serine/threonine-protein kinase-like prot... [more]
A0A7J7DDQ9_TRIWF8.550e-530.17Putative CRINKLY4 related 3 n=1 Tax=Tripterygium w... [more]
A0A4V6ACF6_POPAL9.720e-528.24Protein kinase domain-containing protein n=5 Tax=P... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1171contigH-paniculata_contig1171:23407..28550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue1.2e-42
Seed eggNOG ortholog2880.D8LQT3
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsCOG0515@1,KOG1187@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-24_002190.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size570
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1171.1093.1prot_H-paniculata_contig1171.1093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1171 23521..28550 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.610812-UTR-H-paniculata_contig1171:23406..235201622928879.610812-UTR-H-paniculata_contig1171:23406..23520Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1171 23407..23520 +
1691480654.7364972-UTR-H-paniculata_contig1171:23406..235201691480654.7364972-UTR-H-paniculata_contig1171:23406..23520Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1171 23407..23520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928879.6247156-CDS-H-paniculata_contig1171:23520..236391622928879.6247156-CDS-H-paniculata_contig1171:23520..23639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1171 23521..23639 +
1691480654.7487206-CDS-H-paniculata_contig1171:23520..236391691480654.7487206-CDS-H-paniculata_contig1171:23520..23639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1171 23521..23639 +
1622928879.6453369-CDS-H-paniculata_contig1171:27801..279131622928879.6453369-CDS-H-paniculata_contig1171:27801..27913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1171 27802..27913 +
1691480654.755904-CDS-H-paniculata_contig1171:27801..279131691480654.755904-CDS-H-paniculata_contig1171:27801..27913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1171 27802..27913 +
1622928879.6563137-CDS-H-paniculata_contig1171:28325..285501622928879.6563137-CDS-H-paniculata_contig1171:28325..28550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1171 28326..28550 +
1691480654.763111-CDS-H-paniculata_contig1171:28325..285501691480654.763111-CDS-H-paniculata_contig1171:28325..28550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1171 28326..28550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1171.1093.1

>prot_H-paniculata_contig1171.1093.1 ID=prot_H-paniculata_contig1171.1093.1|Name=mRNA_H-paniculata_contig1171.1093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MGSSTMIILALQAGLLLCARVQASAAAEEPKFSVVTAGQAFSCGVLTEGG
HVECWGNGALPTESPSLEALEGKIPDENHESISGGGFHVCGLYYEGEERR
SNVKAYCVASFEDGAPQDAGQLDIPLLDEGVYWREINAGGQHSCGIDSNR
M*
back to top

mRNA from alignment at H-paniculata_contig1171:23407..28550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1171.1093.1 ID=mRNA_H-paniculata_contig1171.1093.1|Name=mRNA_H-paniculata_contig1171.1093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5144bp|location=Sequence derived from alignment at H-paniculata_contig1171:23407..28550+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTGTCTGCGGATTACACATTACACTCCAGCTGGGAGAGCCACACTAA
ACGTACTGTCTGTACCAAACAACTATACTACACATAGACGGTCTGTACAA
GAATACGGGAGATCATGGGAAGCTCAACGATGATTATCCTGGCGCTTCAA
GCGGGGTTATTACTGTGCGCCAGGGTACAGGCATCCGCAGCTGCGGAGGA
GCCGAAGTTTTCGGTCGTGACTGCGGGGCAAGCGTGAGTTATACCTGATT
TCTGTGTGATGGGTTATCATGCCATCGTGCCTTCTTATAATCTAGAGCTC
TAGTAGTGTAGAGATAATTCAAAGACTGGGAACAGATTAGAGGAAGCGCA
GCGATATGCATCTCCTAGAGACCATTATCTGGGAAGCGGCGCTACCTTCT
TCGTTGCTCACCTTCTGGTAAACGGTGATTGCCAACAACTTGATCGGTGA
ATTGTGAATCGTGTTCATCCGCAACACACCAGATGACGAATATTCGAAAG
ATACTCTCTACACGAGTAGAATAATGATAAGTTTATTTACAGACCGTTCG
CCATAGAGCTTGAGTCATTAAATCAGTGTAAAGTGTGGAGCGTGGACTAC
TGGACAGATCACAGAAACACGCTCAATGTAAGTTTCTTTGATGTACATAC
GACAACGTATGTATGACGTTGCCCTTCACCCCACGCAGCTTGATCCCCTT
GCAACGGTACGTATTCCAACCCTTGAGAGTTCGCCAACTGGGTGGGCAAA
TAGAAGCATCTTCAGAAACACAATGCCTATATTTTGAACTGTTTGTTCCC
CTTTACTGTGCAAAGAGAGTTTTTAGTGCCAAATTTCATTTTTTTTTGTC
GTGAAGAGAGACATCTGTCGATTATTCTCTCATATAAATATTATTACCCA
TACAATACAGTGTGGATTGTGTTGGGGTCCATCGCCGTGCTGTGTGTGTA
AACAGACGGTACCTGGATATATATATATATATATTTGCCAATACGACGTC
GTCAGACGTTATCTACCGCGGGGCTGGGGCGGTGGGATCCGCCAGAACGC
TTCATCCTTGGACATGTGTCTAGTCCAGCTGTGCAGAATATATATAGGCG
GTGGGTACAGCTCCTACCATTCTTGTTTTGATGGTGGTTATTAGCTGTAA
AGAATCAAATCTTCTTTTTGTGGTTTAAGACTCGCTCACCACTCGTGGAT
AGAGGCGTACGCGCCGTATACACCCAAGCCTGCAGGTTGTGCTTGTAATC
AGTTGTGCGGAAGGCGGAATATTGCCAGAATCACTGCTGTAGTTGGTTTA
CATATCCGATTATGTTTACCAATTGGTAAACAGAACTCTTAAAGGTTTGT
TCTCGTCGGCCAGCCAAGTCATGAGAGGTCCACCTGTCTGTCAATCAGTG
CCTTCTGGTGCCGCCGCGTCGAAAAATGGTTGGTTTTATCCCTCACGTTT
CACTGATCATATTTGGTTTATCACGATATTCACGAACGACCCAAAAACGG
TACGCCACACAGACGTGAAACAACGAACAGGATGAGACCTCACAACAAGC
AATAATACAAATAATTACAAGGGATCAAGCCTCCTCCCTATGGGCACGGA
CGCTATTGCGCCCCATGCGCCCGCCAACCCCCAATTCGCAAACGGCAATG
GAGCGTGTAGGAGCGAAGAGCCGCCTTTCCCAAGTGCTACAGGGAGAGTG
TGGTAGAGTGGAGAATTGCGTTTAGAATTACAAAGGAGCTCCAAAATGTG
AAATACCCTCCGTAATTGGTTTTGAATTCCGTGCCGAGATATACAAATGA
TTGTGTCTTCAATGAACGTGTGTGTGCACATATGCTGCTCTGCGGAGAAA
CTTCTTTTAAAAATGATCTAAATAATAATAATAGATTAGAAATAAAATAA
ACTTTGGATAATAAGAAGCAATATCAAATAGTTGCGCTCTCTACATCACC
TATCCTGAACAATGATCAAACGAAGTGAACATATTTGTACGGTGAGATTG
CTGTCTGAAACAAAGATACTTAAATCTGAGAAGACGTCCAAATATTATTT
ACCACGTGCGGAAAATCTTGAGAACCTGCTGCAGGCAGATTATATATAAA
TATATATATATATATATATATAATAACTCCGCTATCGAAACTACGTCTTC
CAAGCGTCAGAGAGAGTGAGCAGAGGCTCGAGTGAAAGCGGCAAATAAAA
CAGCACAATCTCGAAGTTTTGATAACTTGCTTGTATTACTTGAGAATAGA
ATGGGCAAAAAACGACAGAGCCTTGTTGAAATGAAAACCCGGGAAACAGA
TAAAGCGAATAAATACTAAAATAATAGATCCCAGACAGCATATCGGCGGA
TTTCCTGGTTAAATGCTGCTCTGTGAGGCGCTTTGGGGGTGGTATAGAAG
ATGTGTACCGAAAGCGGCGGATTGTTCCCCAAGCATTCTGAGAAAACATG
AATCAAAAGTGGCAGAACGGCGCCGAGAGGTTGGTAACGAATATATATAT
ATATATATATATATATGTTGAACGCGGGGGATTGTGCTCAAAGATGCTAT
GCAGAACAGCAGTATATATCGGTGATTTTTTCAGAGTGTAACTTCACAAC
CAGAGTGCAGCCTTAGAAATCCCACAGCACCGTCAGTTCGACGAGTTAGA
CCTCACGGAGCCGCTGGAATGCAAAGCTAAAGCTCCCGACCCATGCGAGT
GACGAACATAACATTACAAACGTCCCCCCGGTTGAAGTACGGTGGAGTTA
GGGCTGAAACAGAACAATCTCACCCGTTCTGAAAGCTTGAAATCGATTAA
TCGTGCATGGTGCAGGTACAATTTATTCGAAATAACAACAACTTTTGATC
GGAGAGCCTAACTGACCCAACAAGAGTATCGGCGGGACCGCATAGGTCAG
GGCTTTTCATTCACACCGCCCTATGAAGTCCAAATCTTTCAGCTGACTGC
GCTGTGCGAGGTCTACGGGTCTTTACGATTGGACTCTGATTATGAAGTTA
CAGTCTGAATTTTACCAATATACTGTTTGAAGATACATCAGGAACTGGAA
GGAAAAATTTTGCCCTGTGAGGCGTCGACAGGGGGTGCTATCAAATATAT
ATATATCGGCGGCTCTGATCCATTAAAGGAAATGCAGACACTCAGTAATC
TTCCGAAGAGTGGAAGCAGCGGAAAGGGCTTTGCCTTAGCCTTCCGGGGG
TTAAAAAAATAAATATATATATATATATATCGGCGGATTGCGCTCGAAGA
TTCCATAGAAAACATATATAAGAAATGGCATAAAAATGCTGCTCTGTGAG
GTGTCGAGAGAGTGCTAATAATTAATATATAACAGTATATTGGTGAAGTG
GGGACCCAACTTTGAGATGGGAACCCTGGGTTATATTGGAAATAGGCTGT
ATCCTGAAGATCCGAAATTAATTTTCAGGAAAAGGCCTATTTCCAACATA
ACCCAGGGTCCCCATCTCAAACTTGGGTTCCCATTTCACCAATATGCTGT
TTTATGTATATAGATAATTTACTATTAATACAACAGTTTTGCACTGGAGG
GAGGAGGGAGACGGGTTCAGCGACAAATTAGCGATGCCAGGGTCGGGGCT
ATGTCATCAGGGTCAGGTCGTCACCGATATGGGAGTGTTTCATTAACCCG
TTCGGGATGCGGTACTGTTGGAAATATGGTTCAAGAGGATCGTCATCCGA
TTCATGTTGAAAATCGGCAATTTTTCGAGCGTTCTAATTTAGCTAAAGGA
AAGTGTCCATGTGTCTAGAGGGTAGTTACCCTGTGAGTACCTTGTTGCGG
GTATTACAATGTCCGCACATTGCGGGAGGTCGACAATATGCATAAAACGT
ATCAGAACGTTGTATATGCAATGTAAACCTCACCACAATGTCTTAATACG
CTTCTGTAAACAGTGCCAACCTCATTACAGCATGGACGTTGCAATCAATA
CTCGCAATAAGGTGTACCCTCCCCTCCGGCTAAGTGTGTGCCCTAAAGCA
GATAGATCTGGGTGTGCCCAAAAACAGATCCACGATGGGTTGCGTCGCGC
GATCTGATCTATTACTATTCCTATTTTCAACCGCATGAAAAAAAAAAAAA
AAAGCTCCCTAAGAAATACATCAGAAAGCAAATCCCACATGGGGGCTGCG
TCTCCAAAGAATTTATAATGAAATAGTAGTACTACAGCGAACGGAAACGT
AACAAACAGACACGGGCAATATTTCAGGTTCGCCGGTCCCTCCACGCCAT
TTTTTATATTATCTTCGATTTCGTCATAATCCATAATATAATAATATATT
ATGCCAGAACATTGCCAGAACATTATTGTAATTATTACCCTACCATATGT
ATTCAATGCTTTTCATCGATCGCGTACTGTACTCGAACTCGCCAGGTTTT
CTTGCGGCGTTCTTACGGAAGGGGGGCACGTGGAGTGCTGGGGTAACGGT
GCCCTGCCCACCGAATCTCCCTCTCTAGAAGCTTTGGAAGGAAAGATACC
AGATGAGGTGAACACGATACAACTGCTGTTGCTTTGCGTTTCAAAACAAC
TTTTTCAACGCGATATATATATATTAGCAGGCCTCCAATTGAAAGCCACG
CGAAGGGGTTACGAGCAAGAGTCATAGAGAGAGAGAGAGAGAGAGAGAGT
GATGCAGGTAATTTATTATCGGGTTTTAGCATTGACGGAACAAAAACGAG
ATGATGAGAGAGGGCACCTGGAGGTTGAGGTCTGATTCATGCAACGTCGC
AAGCTAATAACTTCGCAGTGGTGCTGTTTTCGGCTTTGCTCTTTTTGGCC
TTGATCTCATTCCAACAGAGGAATCCGTTCTCTGTGTCGAGACTAAATTG
GTCAAGAATCACCCCGCCCCTCCCCCCCGCCGCCGCCCTCCAACGAAAAA
TCATGTACGAAAAACAAAGAACCACGAGTCCATATCTGGGGGCGGATTTC
ACGTATGCGGTCTCTACTATGAAGGAGAAGAACGGCGCAGCAACGTAAAG
GCTTACTGCGTAGCGTCCTTCGAAGACGGCGCACCCCAGGATGCGGGTCA
ATTGGATATTCCGCTCCTGGACGAGGGCGTTTACTGGCGGGAGATCAATG
CTGGGGGTCAGCACAGCTGTGGCATCGACAGCAATCGCATGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1171:23407..28550+

>mRNA_H-paniculata_contig1171.1093.1 ID=mRNA_H-paniculata_contig1171.1093.1|Name=mRNA_H-paniculata_contig1171.1093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig1171:23407..28550+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAGCTCAACGATGATTATCCTGGCGCTTCAAGCGGGGTTATTACT
GTGCGCCAGGGTACAGGCATCCGCAGCTGCGGAGGAGCCGAAGTTTTCGG
TCGTGACTGCGGGGCAAGCATGGGAAGCTCAACGATGATTATCCTGGCGC
TTCAAGCGGGGTTATTACTGTGCGCCAGGGTACAGGCATCCGCAGCTGCG
GAGGAGCCGAAGTTTTCGGTCGTGACTGCGGGGCAAGCGTTTTCTTGCGG
CGTTCTTACGGAAGGGGGGCACGTGGAGTGCTGGGGTAACGGTGCCCTGC
CCACCGAATCTCCCTCTCTAGAAGCTTTGGAAGGAAAGATACCAGATGAG
GTTTTCTTGCGGCGTTCTTACGGAAGGGGGGCACGTGGAGTGCTGGGGTA
ACGGTGCCCTGCCCACCGAATCTCCCTCTCTAGAAGCTTTGGAAGGAAAG
ATACCAGATGAGAACCACGAGTCCATATCTGGGGGCGGATTTCACGTATG
CGGTCTCTACTATGAAGGAGAAGAACGGCGCAGCAACGTAAAGGCTTACT
GCGTAGCGTCCTTCGAAGACGGCGCACCCCAGGATGCGGGTCAATTGGAT
ATTCCGCTCCTGGACGAGGGCGTTTACTGGCGGGAGATCAATGCTGGGGG
TCAGCACAGCTGTGGCATCGACAGCAATCGCATGTAGAACCACGAGTCCA
TATCTGGGGGCGGATTTCACGTATGCGGTCTCTACTATGAAGGAGAAGAA
CGGCGCAGCAACGTAAAGGCTTACTGCGTAGCGTCCTTCGAAGACGGCGC
ACCCCAGGATGCGGGTCAATTGGATATTCCGCTCCTGGACGAGGGCGTTT
ACTGGCGGGAGATCAATGCTGGGGGTCAGCACAGCTGTGGCATCGACAGC
AATCGCATGTAG
back to top