mRNA_H-paniculata_contig1171.1092.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: A0A6H5JNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT6_9PHAE) HSP 1 Score: 557 bits (1436), Expect = 1.750e-194 Identity = 315/375 (84.00%), Postives = 326/375 (86.93%), Query Frame = 1
Query: 1 MPVSFSPMPPGGQGGSAP-PPQAAPGNRTKAPAGVKEILKTVTPNYVVTAVIKNRLEEGKIKAQKKKRRTRQEILASMDLRELQMERLAMARMGFLDKAREVEVWIEQERAKTQKEREEKEQSILAQKLGGLDMSHRRRFIGLESKQQHGEAQFRAKCEKEKEELRLKHKREYDMLIEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFETQAQDLDDACDKQWRTRVEQSIV--------------SSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKKVVMYCRRAALKRMTRDIKEDAEEERRIMANKSDGMSNVCVG 1080
MPV+F P P GG G+AP P A GN P GVKEILKTVTPNYVVTAVIKNRLEEGKIKAQKKKRRTRQEILA MDLRELQMERLAMARMGFLDKAREVEVWIE ER KTQKEREEKEQ+ILAQKLGGLD+SHRRRFIGLE+KQ GEAQFRAK ELRLKHKREYDMLIEETAQRAYGGVSSCQ C+KTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFE QAQDLDDACDKQWRTRVEQ +SAWSGGKSRLEQLVEKQQHT+KSLEETH+AKYELLVKQQDIQRRNLKSTFEAERKKV MYCRRAALKRMTRDIKEDA+EERR MANKSDGM NV +G
Sbjct: 1 MPVTFGP-PGGGAAGAAPVAPSAGSGNTKAHPPGVKEILKTVTPNYVVTAVIKNRLEEGKIKAQKKKRRTRQEILAGMDLRELQMERLAMARMGFLDKAREVEVWIESERLKTQKEREEKEQAILAQKLGGLDISHRRRFIGLENKQGEGEAQFRAKXXXXXXELRLKHKREYDMLIEETAQRAYGGVSSCQ-CEKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFEIQAQDLDDACDKQWRTRVEQRAKPYACSFLHRTSLWRTSAWSGGKSRLEQLVEKQQHTVKSLEETHEAKYELLVKQQDIQRRNLKSTFEAERKKVAMYCRRAALKRMTRDIKEDADEERRTMANKSDGMDNVFLG 373
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: A0A836CAU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU2_9STRA) HSP 1 Score: 401 bits (1030), Expect = 5.730e-134 Identity = 224/318 (70.44%), Postives = 260/318 (81.76%), Query Frame = 1
Query: 139 VTAVIKNRLEEGKIKAQKKKRRTRQEILASMDLRELQMERLAMARMGFLDKAREVEVWIEQERAKTQKEREEKEQSILAQKLGGLD-------MSHRRRFIGLESKQQHGEAQFRAKCEKEKEELRLKHKREYDMLIEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFETQAQDLDDACDKQWRTRVEQSIVSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKKVVMYCRRAALKRMTRDIKEDAEEERRIMANKSDGMSNV 1071
+TAVIKNRL+EG+++AQ+KKR+TR EILA+MD+RELQMERLAMARMGFLDKA+EVE IE+ER KEREE+EQSIL+QKL L M HRRR + LES+ QF KC KE + + KH+REY+ LIEETAQRAYGGVSSCQ C+K YLCRHNKTASYNTRKPTR+VI LRQNAERLRATGR+EEAEEF+ QAQ +DD DK WRTRVEQSIVSSAWSGGKSRLEQLVE+QQH ++S+EETH+AK EL+ KQQ+I ERKKV+MYCRRAALKRMTRDIKE+A+E+RRIMA KSDGM N+
Sbjct: 1 MTAVIKNRLQEGQLRAQRKKRKTRAEILAAMDIRELQMERLAMARMGFLDKAKEVENVIERERVTMLKEREEREQSILSQKLSSLGKYHHAKAMGHRRRLVALESRLTRELQQFLGKCAKELSDTKDKHRREYEALIEETAQRAYGGVSSCQ-CRKRYLCRHNKTASYNTRKPTRDVISLRQNAERLRATGRIEEAEEFDRQAQAIDDKADKDWRTRVEQSIVSSAWSGGKSRLEQLVERQQHQLRSVEETHEAKLELVKKQQEIXXXXXXXXXXXERKKVIMYCRRAALKRMTRDIKEEADEDRRIMAQKSDGMKNL 317
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: D8LM25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM25_ECTSI) HSP 1 Score: 271 bits (692), Expect = 6.080e-78 Identity = 150/269 (55.76%), Postives = 198/269 (73.61%), Query Frame = 1
Query: 265 MARMGFLDKAREVEVWIEQERAKTQKEREEKEQSILAQKLGGLDMSHRRRFIGLESKQQHGEAQFRAKCEKEKEELRLKHKREYDMLIEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFETQAQDLDDACDKQWRTRVEQSIVSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKKVVMYCRRAALKRMTRDIKEDAEEERRIMANKSDGMSNV 1071
MARMGFLDKA E++V +E ERA+ +KER++++Q++L QK+ GL MSH RR + S + A KC E E+L++K K+EYD+L+ ETA RA GGVSSC C + CRHNK+ASYNTRKPT++VIRLRQN +RLRA+GR+ EA+E + A ++ + QWR RVE+SI+SSAW GGKSRLEQ+VE+QQ T+++L TH K L +Q ++RRNL ST AERKKV++YCRR A KR T+DI A+E R + A+KSDGM NV
Sbjct: 1 MARMGFLDKAEELDVMVEAERARLKKERDQQDQAVLDQKMNGLRMSHTRRSAAMTSAHEARIASLLEKCATEIEDLKVKQKKEYDVLVGETATRATGGVSSCV-CTDPFKCRHNKSASYNTRKPTKDVIRLRQNGQRLRASGRLAEADEVDNMAVAIEKLAEDQWRKRVEESILSSAWCGGKSRLEQMVERQQATLRALMSTHTEKLARLKQQDRLERRNLVSTLAAERKKVILYCRREATKRRTKDIAAGAKEARTMNAHKSDGMQNV 268
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: A0A835Z9J4_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9J4_9STRA) HSP 1 Score: 196 bits (498), Expect = 5.040e-52 Identity = 177/552 (32.07%), Postives = 245/552 (44.38%), Query Frame = 1
Query: 7 VSFSPMPPGGQGGSAPP---PQAAPGNRTKAPAGVKEILKTVTPNYVVTAVIKNRLEEGKIKAQK----KKRRTRQEILASMDLRELQMERLAMARMGFLDKAR--------------------------------------------------------------------------------------EVEVWIEQERAKTQKEREEKEQSILAQKLGGLDMSHRRRFIGLESKQQHGEAQFRAKCEKEKEEL---------------------------------------------RLKHKREYDMLIEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAE--------------------------------EFETQAQDLDDACDKQWRTRVEQSIVSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKK-------------VVMYCRRAALKRMT--------------RDIKEDAEEERRIMANKSDGMSNV 1071
+ F P PP GSA P P +AP K ++IL VT N ++ AV+KN+ + K +A++ +KRRTR +IL +MDL+ELQ+ERLAM+RMGF DKAR +++ I+ ER + + ERE KE S++ +L GL+++H+RR LE++ + R+ ++ +EL R K KR+Y++L+ ETA RA GG+SSC C Y CRHNK+ASY+TRKPTR+VIRLRQNA+RLRA+GR EEAE E E +A D + A + WR RVE +IVSSAW+GGKSRLEQ+VE+QQ + +LEETH + L K I RRNL +T AER+ +V C+R +R D+ A E R++ +KSDG+ NV
Sbjct: 4 MPFRPQPP--TQGSAKPVMRPVSAPAKGVKEETAAQDILAKVTRNIIINAVVKNK-QLLKARAERSGRARKRRTRAQILDAMDLQELQLERLAMSRMGFSDKARARARRRRRASWASFGCVARGAAMRXXXXXXXXXXXXXXXXAHRRRRVDDRTYASYCLQSRAHVHLPAXXXXXXXXXXXXXXXXQLKDIDDRIDAERQRLKAEREGKEASLMVHRLAGLELAHKRRITALEARLAE---ELRSLAARQAQELDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASALLCSGLLVVTRAKQKRQYELLVGETATRATGGISSCT-CADAYACRHNKSASYSTRKPTRDVIRLRQNAQRLRASGRQEEAESRGRRGLGGSEAPECARAAGERKCGGAHLLACEMENKAADAERAAEAAWRARVEAAIVSSAWAGGKSRLEQMVERQQAVVAALEETHGERAALARKNHGILRRNLLATLNAERRXXXXXXXXXXXXXXMVPRCKREGQRRYQVXXXXXXXXXXXXXXDVAAAARERRKLGQHKSDGLKNV 548
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: A0A6H5KND4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND4_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.700e-42 Identity = 113/262 (43.13%), Postives = 148/262 (56.49%), Query Frame = 1
Query: 382 LGGLDMSHRRRFIGLESKQQHGEAQFRAKCEKEKEELRLKHKREYDML-----------IEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNA---------------------ERLRATGRVEEAEEFETQAQDLDDACDKQWRTRVEQSIVSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKKVVMYCRRAALKRMTRDIKEDAEEERRIMANKSDGMSNV 1071
+ GL MSH RR + S Q+ A KC E E+L+ K K+EYD+L + ETA RA GGVSSC C + CRHNK+ASYNTRKPT++VIRLRQN +RLRA+GR+ EA+E + A ++ ++QWR RVE+SI+SSAW GGKSRLEQ+VE+QQ T+++L TH K L +Q + R A KR T+DI A+E R++ A+KSDGM NV
Sbjct: 1 MNGLRMSHTRRSAAMTSAQEARIASLLEKCAAEIEDLKDKQKKEYDVLASTNFVHCSMWVGETATRATGGVSSCV-CTDPFKCRHNKSASYNTRKPTKDVIRLRQNVSRPRHSPAEPPLMWLFFVSRGQRLRASGRLAEADEVDNMAVAIEKLAEEQWRKRVEESILSSAWCGGKSRLEQMVERQQATLQALMSTHTEKLARLKQQDRL---------------------REATKRRTKDIAAGAKEARKLNAHKSDGMQNV 240
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: A0A836CD74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD74_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.090e-40 Identity = 99/243 (40.74%), Postives = 145/243 (59.67%), Query Frame = 1
Query: 235 LRELQMERLAMARMGFLDKAREVEVWIEQERAKTQKEREEKEQSILAQKLGGLDMSHRRRFIGLESKQQHGEAQFRAKCEKEKEELRLKHKREYDMLIEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFETQAQDLDDACDKQWRTRVEQSIVSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKKVV 963
L++LQ ERL +AR+GF +KA E++ +++ R + ER +++ +L +L L +H R LE + E Q R K +E+ LR KH E+ L+ +RA G SC C K YLC HNKTASYNTR+P ++VI R+NA RL+ GR+EEA+ +E +A +LD +QWR V +S+ +SAW G S L+ L E+ QH ++ LE ++ L+ + RRNL +T E KKVV
Sbjct: 80 LKKLQKERLIVARLGFPEKAMEIDEMVQKIRDDLKTERAAEDERVLMVELERLQEAHAARAEALEQRIGEEEQQMRGKFCEEQRRLRKKHDSEFLDLVTAATKRAIGRSKSCS-CTKKYLCTHNKTASYNTRRPKKDVIHYRRNASRLKHGGRLEEAKAWEEKAAELDARHLEQWREHVARSLAASAWGGSSSALDHLGERHQHELEQLEVGQSNRWRLMTMHHAVLRRNLGNTMAVEVKKVV 321
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: D7G884_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G884_ECTSI) HSP 1 Score: 140 bits (354), Expect = 1.480e-33 Identity = 91/243 (37.45%), Postives = 140/243 (57.61%), Query Frame = 1
Query: 235 LRELQMERLAMARMGFLDKAREVEVWIEQERAKTQKEREEKEQSILAQKLGGLDMSHRRRFIGLESKQQHGEAQFRAKCEKEKEELRLKHKREYDMLIEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFETQAQDLDDACDKQWRTRVEQSIVSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKKVV 963
L++LQ ERL +AR+GF DKA E++ IE+ RA + ERE+ + IL ++L L + HR + LE + + E + E+E+ L K ++++ L+++ +RA G K YLC HNKTAS+NTR+P +EVI R+NA+RLR GR++E+ +E +A +LD WR V S+ +SAW G S L+QL + Q + +E + L++ + RRN + ERKK V
Sbjct: 7 LKKLQKERLIVARLGFPDKAMEIDEHIEKIRADLRSEREKVDSRILEEELAALAIQHREKLASLEQELKEDEQKVSRSFERERAVLLRKQEKQFVQLVDDAIKRAIGKS-------KKYLCHHNKTASFNTRRPKKEVIHFRKNAKRLRHGGRLDESAAWEEKAAELDANHLDSWREEVAASLTASAWGGSSSALDQLATEHQREISRMETAQANGWTLMLMRHQTARRNCHNVIMVERKKDV 242
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: D7G7B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7B2_ECTSI) HSP 1 Score: 106 bits (265), Expect = 1.470e-23 Identity = 55/61 (90.16%), Postives = 60/61 (98.36%), Query Frame = 1
Query: 784 VSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAKYELLVKQQDIQRRNLKSTFEAERKKVVM 966
++SAWSGGKSRLEQLVEKQQHT+KSLEETH+AKYELLVKQQDIQRRNLKSTFEAERKKV +
Sbjct: 13 ITSAWSGGKSRLEQLVEKQQHTVKSLEETHEAKYELLVKQQDIQRRNLKSTFEAERKKVAI 73
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Match: A0A6C0BWQ3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BWQ3_9ZZZZ) HSP 1 Score: 108 bits (270), Expect = 1.730e-22 Identity = 71/218 (32.57%), Postives = 126/218 (57.80%), Query Frame = 1
Query: 235 LRELQMERLAMARMGFLDKAREVEVWIEQERAKTQKEREEKEQSILAQKLGGLDMSHRRRFIGLES--KQQHGEAQFRAKCEKEKEELRLKHKREYDMLIEETAQRAYGGVSSCQQCQKTYLCRHNKTASYNTRKPTREVIRLRQNAERLRATGRVEEAEEFETQAQDLDDACDKQWRTRVEQSIVSSAWSGGKSRLEQLVEKQQHTMKSLEETHDAK 882
L++LQ ERL ++R+GF +KA ++ IE R K + R+ +E+ ++A+ L L + R+ L++ KQ+H E KH+ E+ +IE +++ G + SC C+ YLC HNKT+S+N RKP VI R+N++RL+ GR E+A + E +A ++D +W+ + SIV S W+ + +++ +E + ++++E+TH+ K
Sbjct: 76 LKKLQKERLIISRLGFAEKAYALDKQIEVMREKAKVVRKAEEEKLMAEMLETLHKKNERKQQRLDAVIKQEHDEXXXXXXXXXXX--XIEKHRTEFLKIIENAERKSIGKIKSCN-CENDYLCHHNKTSSWNIRKPKPIVILYRKNSKRLKQGGRTEDAIQIEEKADEIDYESQIEWKKNIATSIVQSPWNANEPIIDRTIENHKKELETMEKTHEFK 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1171.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1171.1092.1 >prot_H-paniculata_contig1171.1092.1 ID=prot_H-paniculata_contig1171.1092.1|Name=mRNA_H-paniculata_contig1171.1092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=360bp MPVSFSPMPPGGQGGSAPPPQAAPGNRTKAPAGVKEILKTVTPNYVVTAVback to top mRNA from alignment at H-paniculata_contig1171:10705..23014- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1171.1092.1 ID=mRNA_H-paniculata_contig1171.1092.1|Name=mRNA_H-paniculata_contig1171.1092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12310bp|location=Sequence derived from alignment at H-paniculata_contig1171:10705..23014- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1171:10705..23014- >mRNA_H-paniculata_contig1171.1092.1 ID=mRNA_H-paniculata_contig1171.1092.1|Name=mRNA_H-paniculata_contig1171.1092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at H-paniculata_contig1171:10705..23014- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |