mRNA_H-paniculata_contig117.1087.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig117.1087.1
Unique NamemRNA_H-paniculata_contig117.1087.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig117.1087.1 vs. uniprot
Match: A0A6H5L397_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L397_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.690e-25
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:  160 LDSGAGPRRFWEAVCGPRFVDAAWDVELKVLEDQLWKLAVLVREQD------RGQGLALKRADRLRRVLDLRVYDILVLHLRTQLLRDGVD 414
            LDSGAGPR+FWE V GPR V+A+W+V++K LE QLW LA+LVR  D      R QGLAL R + LRR LD+RV+++L+L++RT+L+ DG+D
Sbjct:  839 LDSGAGPRKFWETVAGPRLVEASWNVDIKALEQQLWDLAMLVRGPDLRGHCERHQGLALNRCELLRRTLDVRVFEVLLLYMRTRLIWDGID 929
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BLAST of mRNA_H-paniculata_contig117.1087.1 vs. uniprot
Match: D7FQ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ57_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 8.990e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:  160 LDSGAGPRRFWEAVCGPRFVDAAWDVELKVLEDQLWKLAVLVREQD 297
            LDSGAGPR+FWEAV GPR V+A+W+V++K LE QLW LA+LVR  D
Sbjct:  944 LDSGAGPRKFWEAVAGPRLVEASWNVDIKALEQQLWDLAMLVRGPD 989
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BLAST of mRNA_H-paniculata_contig117.1087.1 vs. uniprot
Match: A0A7S1XZU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZU6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.060e-9
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:  160 LDSGAGPRRFWEAVCGPRFVDAAWDVELKVLEDQLWKLAVLVREQDRGQGLALKRADRLRRVLDLRVYD 366
            LDSGAGPR FW AV     V +   VEL   E Q+W+L +LVR Q+R +GL L R +  RR+LD R+Y+
Sbjct:   70 LDSGAGPREFWMAVTPALKVGSMSIVEL---EQQMWRLVLLVRCQEREKGLRLDRNEAQRRLLDFRLYE 135
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BLAST of mRNA_H-paniculata_contig117.1087.1 vs. uniprot
Match: A0A7S2SEX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEX3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.690e-8
Identity = 32/85 (37.65%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:  160 LDSGAGPRRFWEAVCGPRFVDA---AWDVELKVLEDQLWKLAVLVREQDRGQGLALKRADRLRRVLDLRVYDILVLHLRTQLLRD 405
            +D+GAGP+ FW+ +  P+  D          + LE  +W+L +LVR QDR +GL L R +  R++LD+R+Y++L+L++R +L+ +
Sbjct:  439 IDTGAGPKEFWQNI-NPKKNDTFRGKGTPSAEKLEAHMWRLVLLVRCQDRKKGLRLARHESQRKLLDMRIYELLLLYMRQELVEE 522
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BLAST of mRNA_H-paniculata_contig117.1087.1 vs. uniprot
Match: A0A7R9UDJ3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDJ3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.790e-8
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:  151 GYSLDSGAGPRRFWEAVCGPRFVDAAWDVELKVLEDQLWKLAVLVREQDRGQGLALKRADRLRRVLDLRVYDILVLHLRTQL 396
            G  LD+GAGPR FW A+  P  + +     L  LE  +W+L +LVR QDR +GL L RA+ +RR+LD R+ + +++ L+  L
Sbjct:  899 GNFLDTGAGPREFWMAITPPLKIRS---FSLAELEQMMWRLVLLVRCQDREKGLKLFRAEAMRRLLDSRLAEYVLVMLQKSL 977
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig117.1087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L397_9PHAE3.690e-2558.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ57_ECTSI8.990e-1369.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XZU6_9STRA6.060e-950.72Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2SEX3_9STRA1.690e-837.65Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UDJ3_9STRA1.790e-842.68Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig117contigH-paniculata_contig117:43134..43921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size418
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928878.8416345-CDS-H-paniculata_contig117:43133..433791622928878.8416345-CDS-H-paniculata_contig117:43133..43379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 43134..43379 +
1691480654.4425147-CDS-H-paniculata_contig117:43133..433791691480654.4425147-CDS-H-paniculata_contig117:43133..43379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 43134..43379 +
1622928878.8758905-CDS-H-paniculata_contig117:43749..439201622928878.8758905-CDS-H-paniculata_contig117:43749..43920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 43750..43920 +
1691480654.4504664-CDS-H-paniculata_contig117:43749..439201691480654.4504664-CDS-H-paniculata_contig117:43749..43920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 43750..43920 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig117.1087.1prot_H-paniculata_contig117.1087.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig117 43134..43920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig117.1087.1

>prot_H-paniculata_contig117.1087.1 ID=prot_H-paniculata_contig117.1087.1|Name=mRNA_H-paniculata_contig117.1087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
RRRPWERVDILSTPKTKTRKSRSMKFGERARRWADANKHPPSPLTQLQRR
GYSLDSGAGPRRFWEAVCGPRFVDAAWDVELKVLEDQLWKLAVLVREQDR
GQGLALKRADRLRRVLDLRVYDILVLHLRTQLLRDGVDF
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mRNA from alignment at H-paniculata_contig117:43134..43921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig117.1087.1 ID=mRNA_H-paniculata_contig117.1087.1|Name=mRNA_H-paniculata_contig117.1087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=788bp|location=Sequence derived from alignment at H-paniculata_contig117:43134..43921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACGCCGACCTTGGGAGAGGGTCGATATTTTGTCAACACCTAAAACTAA
GACGAGAAAATCGCGAAGTATGAAATTCGGGGAGCGTGCGAGGCGCTGGG
CTGACGCAAACAAGCACCCACCCTCTCCGTTAACCCAGTTACAGCGACGG
GGGTACTCCTTGGATTCCGGGGCAGGTCCGCGAAGGTTCTGGGAGGCGGT
ATGCGGTCCCCGATTCGTCGACGCCGCATGGGATGTGGAGCTCAAGGTGG
GGCAAAATTTGTGGGTGGGAGAGGGAAGCGGTTGTCGACCTATGAGGTAG
CTGTTACAGGTTGTAAATTTGCAGGATGCGGAGGACTACTGTGTCTAGAA
AAAATGACGACTGCAGGCAAAACGCTGAGGCTAGATTGACTTGCACGGAA
TCAATTTCGTACCAAACATAGTAGACACCGAACGCTGCCAGGATAGTCGC
CACTGTCCTGACCTTGCTGCGCTATCTCACTTCCTGCAGCTTCTGTCTTC
ATTTTGAAATGGCCACAGGAAAAATCATCCCTTTAGGAAGTAACTCAACG
AGCCTGGTTTATCGAGACCATACCCTGATGCTAGATTGTTCGGGTGGGCA
CCTATTTCCGGCACAGGTGCTGGAAGACCAACTGTGGAAATTGGCCGTCC
TCGTCAGAGAGCAAGACCGAGGGCAAGGGCTAGCGCTCAAGCGAGCGGAC
CGTCTCCGTCGCGTTTTAGATCTGCGAGTTTATGACATACTTGTATTGCA
TCTCCGTACTCAGCTGCTCAGGGATGGTGTCGATTTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig117:43134..43921+

>mRNA_H-paniculata_contig117.1087.1 ID=mRNA_H-paniculata_contig117.1087.1|Name=mRNA_H-paniculata_contig117.1087.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig117:43134..43921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACGCCGACCTTGGGAGAGGGTCGATATTTTGTCAACACCTAAAACTAA
GACGAGAAAATCGCGAAGTATGAAATTCGGGGAGCGTGCGAGGCGCTGGG
CTGACGCAAACAAGCACCCACCCTCTCCGTTAACCCAGTTACAGCGACGG
GGGTACTCCTTGGATTCCGGGGCAGGTCCGCGAAGGTTCTGGGAGGCGGT
ATGCGGTCCCCGATTCGTCGACGCCGCATGGGATGTGGAGCTCAAGAGAC
GCCGACCTTGGGAGAGGGTCGATATTTTGTCAACACCTAAAACTAAGACG
AGAAAATCGCGAAGTATGAAATTCGGGGAGCGTGCGAGGCGCTGGGCTGA
CGCAAACAAGCACCCACCCTCTCCGTTAACCCAGTTACAGCGACGGGGGT
ACTCCTTGGATTCCGGGGCAGGTCCGCGAAGGTTCTGGGAGGCGGTATGC
GGTCCCCGATTCGTCGACGCCGCATGGGATGTGGAGCTCAAGGTGCTGGA
AGACCAACTGTGGAAATTGGCCGTCCTCGTCAGAGAGCAAGACCGAGGGC
AAGGGCTAGCGCTCAAGCGAGCGGACCGTCTCCGTCGCGTTTTAGATCTG
CGAGTTTATGACATACTTGTATTGCATCTCCGTACTCAGCTGCTCAGGGA
TGGTGTCGATTTCGTGCTGGAAGACCAACTGTGGAAATTGGCCGTCCTCG
TCAGAGAGCAAGACCGAGGGCAAGGGCTAGCGCTCAAGCGAGCGGACCGT
CTCCGTCGCGTTTTAGATCTGCGAGTTTATGACATACTTGTATTGCATCT
CCGTACTCAGCTGCTCAGGGATGGTGTCGATTTC
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