mRNA_H-paniculata_contig117.1086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig117.1086.1
Unique NamemRNA_H-paniculata_contig117.1086.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig117.1086.1 vs. uniprot
Match: A0A6H5L397_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L397_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.740e-24
Identity = 72/156 (46.15%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:  715 DLPRLMLALRIAVGHELYAAGERLFRCVEADHGEMHGKPYLPVSLTGAERAQFRACLEDTCNGSLRQGVSALLRVQEASRKAAMERKEAKKVILRSGGSARDDMVQLNGKSS----GPMYEGSLPT-----------LASFLTSPLSSRAEKNKAA 1137
            DLPRL+L+LR AVG ELYA GERL RCVEADH E+HGK Y PV +T AER QF  CLED   G LR+ V   LRVQE+ R AA+E+        R G   R +     G       G    G+ P            ++S  T PLS+ +EK +AA
Sbjct:  601 DLPRLVLSLRAAVGEELYAVGERLLRCVEADHREIHGKLYHPVPITPAEREQFHVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRMNGWTCGGGGXXXXXGGCLRGARPKSARNAEEGQDEISSLTTGPLSTPSEKARAA 756
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BLAST of mRNA_H-paniculata_contig117.1086.1 vs. uniprot
Match: D7FQ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ57_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.590e-24
Identity = 73/157 (46.50%), Postives = 88/157 (56.05%), Query Frame = 1 
Query:  715 DLPRLMLALRIAVGHELYAAGERLFRCVEADHGEMHGKPYLPVSLTGAERAQFRACLEDTCNGSLRQGVSALLRVQEASRKAAMERKEAKKVILRSGGSARDDMVQLNG----------------KSSGPMYEGSLPTLASFLTSPLSSRAEKNKAA 1137
            DLPRL+L+LR AVG ELYA GERL RCVEAD+ E HG+ Y PV +T AER QFR CLED   G LR+ V   LRVQE+ R AA+E+        R G   R +     G                KS+    EG    ++S  T PLS+ AEK +AA
Sbjct:  706 DLPRLVLSLRAAVGEELYAVGERLLRCVEADYRETHGRSYHPVPITPAEREQFRVCLEDAARGRLRRAVLTFLRVQESHRAAAVEKDRGNVEKTRQGRRVRVNGWTCGGXXXXXXXXXCLRGARRKSARNAEEGQ-DGISSLTTGPLSTTAEKARAA 861
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig117.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L397_9PHAE4.740e-2446.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ57_ECTSI6.590e-2446.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig117contigH-paniculata_contig117:41551..43312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1182
Cds size1179
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928878.774592-CDS-H-paniculata_contig117:41550..426891622928878.774592-CDS-H-paniculata_contig117:41550..42689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 41551..42689 +
1691480654.4270878-CDS-H-paniculata_contig117:41550..426891691480654.4270878-CDS-H-paniculata_contig117:41550..42689Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 41551..42689 +
1622928878.7916567-CDS-H-paniculata_contig117:43271..433111622928878.7916567-CDS-H-paniculata_contig117:43271..43311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 43272..43311 +
1691480654.4349575-CDS-H-paniculata_contig117:43271..433111691480654.4349575-CDS-H-paniculata_contig117:43271..43311Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig117 43272..43311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig117.1086.1prot_H-paniculata_contig117.1086.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig117 41551..43311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig117.1086.1

>prot_H-paniculata_contig117.1086.1 ID=prot_H-paniculata_contig117.1086.1|Name=mRNA_H-paniculata_contig117.1086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp
GATRLHKILGQVHHKRLLRLFNKWIDVLRPSSPPGEESSTMIPPPNAQGF
AYEEEVLSFEQVYDGEGQRAKRVTPDMEASGLGGDCREEMDTERSLNAAH
SFVPVRQPGESLLANEESVSGFSSSAASSQTDPQCLTKPFVNEEAAMANQ
SERAEVDAPTLPQDHNPWLDTVPISGVSVRRCSIQSNDKNTRRNLYDKGG
DILLHSHADTDISSPKIAVNNTDDIKQVSRSLLSHIPTDLPRLMLALRIA
VGHELYAAGERLFRCVEADHGEMHGKPYLPVSLTGAERAQFRACLEDTCN
GSLRQGVSALLRVQEASRKAAMERKEAKKVILRSGGSARDDMVQLNGKSS
GPMYEGSLPTLASFLTSPLSSRAEKNKAASYSDGGTPWIPGQV
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mRNA from alignment at H-paniculata_contig117:41551..43312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig117.1086.1 ID=mRNA_H-paniculata_contig117.1086.1|Name=mRNA_H-paniculata_contig117.1086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1762bp|location=Sequence derived from alignment at H-paniculata_contig117:41551..43312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTACTCGTCTGCACAAGATACTCGGACAAGTACACCACAAGCGGCT
TCTCCGATTGTTTAACAAGTGGATCGACGTCCTCAGACCTAGCTCGCCAC
CTGGAGAAGAATCTAGTACAATGATACCGCCGCCCAACGCCCAGGGGTTT
GCATACGAAGAAGAAGTTTTGAGCTTTGAACAGGTGTATGACGGAGAAGG
CCAGCGAGCGAAGAGGGTCACACCAGATATGGAGGCGTCGGGGTTGGGAG
GAGATTGCCGGGAGGAGATGGACACGGAACGCAGTTTAAATGCCGCACAC
TCGTTTGTTCCCGTGCGACAACCAGGTGAATCTTTACTGGCCAACGAAGA
ATCGGTTTCTGGCTTCTCGAGCTCAGCAGCATCTTCTCAGACGGACCCGC
AATGTCTGACGAAGCCATTCGTCAACGAGGAGGCAGCAATGGCCAACCAG
TCGGAACGGGCCGAAGTCGATGCGCCAACGTTACCCCAGGATCACAACCC
TTGGTTGGATACTGTGCCGATTTCTGGAGTGAGTGTGAGGCGTTGCAGCA
TTCAATCAAACGACAAGAACACCAGGCGTAATTTATATGACAAAGGTGGA
GATATTTTGCTCCACTCACACGCAGACACGGACATCTCCAGCCCTAAGAT
AGCCGTGAATAACACGGATGACATCAAGCAGGTATCCCGATCCCTCCTGT
CACACATTCCTACGGACCTCCCTCGCCTTATGCTAGCTCTCCGAATAGCC
GTGGGGCACGAACTCTACGCAGCAGGGGAGCGACTGTTTAGGTGCGTCGA
GGCTGATCATGGAGAAATGCATGGTAAGCCTTACCTACCTGTTTCCCTTA
CCGGTGCTGAAAGGGCCCAGTTCCGTGCATGCTTAGAAGACACATGTAAC
GGTTCACTCAGGCAAGGGGTGTCAGCTTTATTGCGGGTACAGGAGGCATC
GCGGAAGGCTGCGATGGAGCGAAAAGAGGCAAAGAAAGTCATTTTACGCA
GTGGGGGCAGCGCACGAGATGACATGGTCCAGCTCAACGGGAAAAGCTCG
GGTCCAATGTATGAAGGGTCGCTACCGACGTTGGCATCCTTTCTCACTAG
TCCGTTATCTTCCCGAGCAGAAAAAAACAAGGCAGCTAGGTGAGGTTCCA
AGATAAACGGCTGAGGTTGTGTGTTGTGCTTTTGTGGCGCACTACAAAGC
TGCATATCATTGCCTTGACATGATATCAGTACTAGTGTAAACCAATGAAA
TAATTGATATTGGCGTGCTCACGACAGTTGCTGATTCCGTTGTGATAGTA
AACACTGCAAAATAGGCGTTGTAACCGCTTACGGTAGGACCCCTCCGCTG
GTCCTGAAGAAGAACGGCTTTTACGTGTTTGATGTCGTCCATATTTGCAC
GCCACCTGCGCGGCTGCCACGATAGTACGCCTCATTGTTCACTTTTATCA
ACTTAGAAAGCATTTTTTGCGCGTGACCAACGTCGCCCGAACTGAGCAAC
ACGGTGTTGTCCCGTCCCTTCGTAGAGTGTTGCGCAATCGACTCGTTGTT
CTTCTCGAAGCCGCTGCCGAAGTTTGGAGCGCTAGACGCCGACCTTGGGA
GAGGGTCGATATTTTGTCAACACCTAAAACTAAGACGAGAAAATCGCGAA
GTATGAAATTCGGGGAGCGTGCGAGGCGCTGGGCTGACGCAAACAAGCAC
CCACCCTCTCCGTTAACCCAGTTACAGCGACGGGGGTACTCCTTGGATTC
CGGGGCAGGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig117:41551..43312+

>mRNA_H-paniculata_contig117.1086.1 ID=mRNA_H-paniculata_contig117.1086.1|Name=mRNA_H-paniculata_contig117.1086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig117:41551..43312+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTACTCGTCTGCACAAGATACTCGGACAAGTACACCACAAGCGGCT
TCTCCGATTGTTTAACAAGTGGATCGACGTCCTCAGACCTAGCTCGCCAC
CTGGAGAAGAATCTAGTACAATGATACCGCCGCCCAACGCCCAGGGGTTT
GCATACGAAGAAGAAGTTTTGAGCTTTGAACAGGTGTATGACGGAGAAGG
CCAGCGAGCGAAGAGGGTCACACCAGATATGGAGGCGTCGGGGTTGGGAG
GAGATTGCCGGGAGGAGATGGACACGGAACGCAGTTTAAATGCCGCACAC
TCGTTTGTTCCCGTGCGACAACCAGGTGAATCTTTACTGGCCAACGAAGA
ATCGGTTTCTGGCTTCTCGAGCTCAGCAGCATCTTCTCAGACGGACCCGC
AATGTCTGACGAAGCCATTCGTCAACGAGGAGGCAGCAATGGCCAACCAG
TCGGAACGGGCCGAAGTCGATGCGCCAACGTTACCCCAGGATCACAACCC
TTGGTTGGATACTGTGCCGATTTCTGGAGTGAGTGTGAGGCGTTGCAGCA
TTCAATCAAACGACAAGAACACCAGGCGTAATTTATATGACAAAGGTGGA
GATATTTTGCTCCACTCACACGCAGACACGGACATCTCCAGCCCTAAGAT
AGCCGTGAATAACACGGATGACATCAAGCAGGTATCCCGATCCCTCCTGT
CACACATTCCTACGGACCTCCCTCGCCTTATGCTAGCTCTCCGAATAGCC
GTGGGGCACGAACTCTACGCAGCAGGGGAGCGACTGTTTAGGTGCGTCGA
GGCTGATCATGGAGAAATGCATGGTAAGCCTTACCTACCTGTTTCCCTTA
CCGGTGCTGAAAGGGCCCAGTTCCGTGCATGCTTAGAAGACACATGTAAC
GGTTCACTCAGGCAAGGGGTGTCAGCTTTATTGCGGGTACAGGAGGCATC
GCGGAAGGCTGCGATGGAGCGAAAAGAGGCAAAGAAAGTCATTTTACGCA
GTGGGGGCAGCGCACGAGATGACATGGTCCAGCTCAACGGGAAAAGCTCG
GGTCCAATGTATGAAGGGTCGCTACCGACGTTGGCATCCTTTCTCACTAG
TCCGTTATCTTCCCGAGCAGAAAAAAACAAGGCAGCTAGGGTGCTACTCG
TCTGCACAAGATACTCGGACAAGTACACCACAAGCGGCTTCTCCGATTGT
TTAACAAGTGGATCGACGTCCTCAGACCTAGCTCGCCACCTGGAGAAGAA
TCTAGTACAATGATACCGCCGCCCAACGCCCAGGGGTTTGCATACGAAGA
AGAAGTTTTGAGCTTTGAACAGGTGTATGACGGAGAAGGCCAGCGAGCGA
AGAGGGTCACACCAGATATGGAGGCGTCGGGGTTGGGAGGAGATTGCCGG
GAGGAGATGGACACGGAACGCAGTTTAAATGCCGCACACTCGTTTGTTCC
CGTGCGACAACCAGGTGAATCTTTACTGGCCAACGAAGAATCGGTTTCTG
GCTTCTCGAGCTCAGCAGCATCTTCTCAGACGGACCCGCAATGTCTGACG
AAGCCATTCGTCAACGAGGAGGCAGCAATGGCCAACCAGTCGGAACGGGC
CGAAGTCGATGCGCCAACGTTACCCCAGGATCACAACCCTTGGTTGGATA
CTGTGCCGATTTCTGGAGTGAGTGTGAGGCGTTGCAGCATTCAATCAAAC
GACAAGAACACCAGGCGTAATTTATATGACAAAGGTGGAGATATTTTGCT
CCACTCACACGCAGACACGGACATCTCCAGCCCTAAGATAGCCGTGAATA
ACACGGATGACATCAAGCAGGTATCCCGATCCCTCCTGTCACACATTCCT
ACGGACCTCCCTCGCCTTATGCTAGCTCTCCGAATAGCCGTGGGGCACGA
ACTCTACGCAGCAGGGGAGCGACTGTTTAGGTGCGTCGAGGCTGATCATG
GAGAAATGCATGGTAAGCCTTACCTACCTGTTTCCCTTACCGGTGCTGAA
AGGGCCCAGTTCCGTGCATGCTTAGAAGACACATGTAACGGTTCACTCAG
GCAAGGGGTGTCAGCTTTATTGCGGGTACAGGAGGCATCGCGGAAGGCTG
CGATGGAGCGAAAAGAGGCAAAGAAAGTCATTTTACGCAGTGGGGGCAGC
GCACGAGATGACATGGTCCAGCTCAACGGGAAAAGCTCGGGTCCAATGTA
TGAAGGGTCGCTACCGACGTTGGCATCCTTTCTCACTAGTCCGTTATCTT
CCCGAGCAGAAAAAAACAAGGCAGCTAGTTACAGCGACGGGGGTACTCCT
TGGATTCCGGGGCAGGTCTTACAGCGACGGGGGTACTCCTTGGATTCCGG
GGCAGGTC
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