mRNA_H-paniculata_contig117.1085.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig117.1085.1 vs. uniprot
Match: D7FQ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ57_ECTSI) HSP 1 Score: 283 bits (724), Expect = 1.380e-83 Identity = 175/358 (48.88%), Postives = 235/358 (65.64%), Query Frame = 1 Query: 31 LIIVTSEVRLAKDRILELEAETQSLRAWAPKMVERADSASVAEASRVRDRSTVIKEQPNRAQREAADARQEVGRLHAINQGLQRDVDNARHRLLTVQGSLAESVEEVAGLKQNLEAERIKTVAGSHRLKDAVQRRDAALGEIRHDSVRLREQRDSFGQDCVVLATKLQRLKKEEGCRRIFRTLQCARNAVLTRAIGAWMIWAVKDDYIHKQTHRQEKHNGEIASLEADILSAKRRYVDSQQYAEGIRRSRAGVAEAVAKAVCRR------GGLAAAAEERGGGSQ---LQWCFWGWARIAREGEDASATRARRVAAERELRNIADKLQVAIDRAQTAENSRDKHREEAEALCKDITRR 1077 LI +EV +A++RI +LE+E QS+R+ P++VERAD A+VAE R+RD+ EQ RAQR AA+A++ VGR AINQG QRDVDNARHRLLTVQGSLAE EE AGL++ LE ERIKTVAGS RL DAV R+D AL E+R DS +LREQRD QD +L KL +L+K++ RR+ L AR+ L A+ A ++ D ++ KQT +QE+H E+ASLEAD+ A+ R ++++ + +R SR V+ KA RR G AA E+ GG + ++WCFWGWAR+A+ G A A +ARRV AE+EL + L A + A+ AE ++H AEAL + I +R Sbjct: 70 LITSANEVWIARERIFQLESEAQSIRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELENERIKTVAGSRRLADAVDRQDNALAEVRRDSAQLREQRDRLAQDSAILGIKLHQLRKKQAARRLLHALYLARHRSLATALRALVVRVTNDIHLKKQTRQQEEHASEVASLEADVQGAETRCRNARRGLDALRDSRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTAVAKKARRVEAEKELAGARELLLAADENARCAEAEHNQHLATAEALAEQIKQR 427
BLAST of mRNA_H-paniculata_contig117.1085.1 vs. uniprot
Match: A0A6H5L397_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L397_9PHAE) HSP 1 Score: 220 bits (560), Expect = 7.800e-61 Identity = 150/342 (43.86%), Postives = 206/342 (60.23%), Query Frame = 1 Query: 79 ELEAETQSLRAWAPKMVERADSASVAEASRVRDRSTVIKEQPNRAQREAADARQEVGRLHAINQGLQRDVDNARHRLLTVQGSLAESVEEVAGLKQNLEAERIKTVAGSHRLKDAVQRRDAALGEIRHDSVRLREQRDSFGQDCVVLATKLQRLKKEEGCRRIFRTLQCARNAVLTRAIGAWMIWAVKDDYIHKQTHRQEKHNGEIASLEADILSAKRRYVDSQQYAEGIRRSRAGVAEAVAKAVCRR------GGLAAAAEERGGGSQ---LQWCFWGWARIAREGEDASATRARRVAAERELRNIADKLQVAIDRAQTAENSRDKHREEAEALCKDITRR 1077 +LE+E QS+R+ P++VERAD A+VAE R+RD+ EQ RAQR AA+A++ VGR AINQG QRDVDNARHRLLTVQGSLAE EE AGL++ LE+ERIKTV+GS RL DAV+R+D AL E+R DS +LREQRD +D +L KL +L+K++ R+ L AR+ L A+ A ++ D ++ K A+ R D+++ + +R +R V+ KA RR G AA E+ GG + ++WCFWGWAR+A+ G A +ARRV AE+EL + L A + A+ AE ++H AL + I +R Sbjct: 3 QLESEAQSMRSSPPQVVERADPAAVAEVMRLRDKVAARDEQARRAQRAAAEAQEAVGRESAINQGFQRDVDNARHRLLTVQGSLAELSEENAGLRRELESERIKTVSGSRRLADAVERQDNALAEVRRDSAQLREQRDR--RDSAMLGIKLHQLRKKQAAGRLLHALDLARHRSLATALRALVVRVTNDIHLKK--------------------GAETRCRDARRRLDALRDTRETVSRLTVKACWRRHQGMVIAGAAAEEEKPGGDASALVVRWCFWGWARVAQGGCTVVAKKARRVEAEKELTGARELLLAADENARRAEAEHNQHLATVGALAEQIKQR 322
BLAST of mRNA_H-paniculata_contig117.1085.1 vs. uniprot
Match: A0A836CC54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC54_9STRA) HSP 1 Score: 114 bits (285), Expect = 4.940e-24 Identity = 80/232 (34.48%), Postives = 125/232 (53.88%), Query Frame = 1 Query: 31 LIIVTSEVRLAKDRILELEAETQSLRAWAPKMVERADSASVAEASRVRDRSTVIKEQPNRAQREAADARQEVGRLHAINQGLQRDVDNARHRLLTVQGSLAESVEEVAGLKQNLEAERIKTVAGSHRLKDAVQRRDAALGEIRHDSVRLREQRDSFGQDCVVLATKLQRLKKEEGCRRIFRTLQCARNAVLTRAIGAWMIWAVKDDYIHKQTHRQEKHNGEIASLEADILSA 726 L++V++++RL++ R L+LE+ L+ P+ VER D + + +++RD+ + + QREA D+ + +GR A LQRD+D ARH+LLT+QGSLAE E L + LEAER++ VA R ++ + AAL R + LR QRD+F + A +L+RL + E RR+ + CAR RA A W++ R+ A EA + +A Sbjct: 87 LVLVSAQLRLSRQRSLDLESAMGELKLRPPQQVERPDPDAAFQIAQLRDKLSGTETALRECQREARDSAEALGRERAAGLALQRDLDAARHKLLTLQGSLAEGARENGALMRELEAERVRAVAQQRRAAESEEALAAALAAARAAADGLRSQRDAFCEAAATSAARLRRLSRAEAARRVLQA--CARRTAAVRA-AALHRWSLNAALSAAADQRRVMEAQRRAEAEAQVDAA 315 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig117.1085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig117.1085.1 >prot_H-paniculata_contig117.1085.1 ID=prot_H-paniculata_contig117.1085.1|Name=mRNA_H-paniculata_contig117.1085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=318bp MVERADSASVAEASRVRDRSTVIKEQPNRAQREAADARQEVGRLHAINQGback to top mRNA from alignment at H-paniculata_contig117:38041..41466+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig117.1085.1 ID=mRNA_H-paniculata_contig117.1085.1|Name=mRNA_H-paniculata_contig117.1085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3426bp|location=Sequence derived from alignment at H-paniculata_contig117:38041..41466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig117:38041..41466+ >mRNA_H-paniculata_contig117.1085.1 ID=mRNA_H-paniculata_contig117.1085.1|Name=mRNA_H-paniculata_contig117.1085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig117:38041..41466+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |