mRNA_H-paniculata_contig1169.1081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1169.1081.1
Unique NamemRNA_H-paniculata_contig1169.1081.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: D7FVC9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC9_ECTSI)

HSP 1 Score: 291 bits (744), Expect = 2.330e-95
Identity = 145/224 (64.73%), Postives = 174/224 (77.68%), Query Frame = 1 
Query:   55 MGESLSLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIEEQMHLFRSTFELDASGTTRRRPREEKVDSPATAVAEEVDTTQKTGDWWTGSEYNGRRY 726
            M E LSLEGTV+ QRA+ELQA+A KLARQRAFLREERRRARM+EE+LR E ADL++T +DE++PA CL    EKR+RLNVGGQ FE+S  VLRRDP  LLAALC D GPL+ D  GT  VDRDWW FR+I+KFLRDG+LP+D TLLTQLY EAGYWRC SLKRAIEEQMHL+RS+  + ASG  + + ++ +V+ P     E+   T    DWWTG+ YNGR+Y
Sbjct:    1 MEEKLSLEGTVVVQRASELQAEAQKLARQRAFLREERRRARMDEEVLRLEKADLSMTKDDEWIPAECLVHHSEKRVRLNVGGQLFEASTAVLRRDPACLLAALCHDGGPLRADLGGTINVDRDWWMFRYIIKFLRDGILPTDTTLLTQLYREAGYWRCESLKRAIEEQMHLYRSSLGVGASGGAQDKTKDTEVEKPPVKEPEKPKETTDKDDWWTGANYNGRKY 224
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BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A835YWA5_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA5_9STRA)

HSP 1 Score: 244 bits (624), Expect = 1.280e-75
Identity = 147/336 (43.75%), Postives = 188/336 (55.95%), Query Frame = 1 
Query:    4 DIGSTSWLRDIDYITEKMGESLSLEGTVLAQRANELQADALK-------------------------------LARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIEE-QMHLFRSTFELDASGTT---RRRPR-----------------------------EEKVDSPATAVAEEVDTTQKTGDWWTGSEYNGRRYNETPAVAE--VAEALQRDGVKFATATTWSTG 813
            D+G+  W R +D +   + + LSLEG VL+QRA++L+++A+K                               LARQRAFLR+ERRRARMEEE LR + A   +T   ++VP   LP P  KR++LNVGGQ FE S  VL+RDP SLLAALC+++ PLK D DGT YVDRDWW FR++LKFLRDG LPSD TLL QLY EAGYWRC SL+ AIEE Q+ L+R  +E+DASG     + RP                              E K      A AE+   T     WW  +EY+G+R+    +  +  VA    +D V   TA+TWS G
Sbjct:    3 DLGTECWTRHVDCLAHSLQDKLSLEGVVLSQRASDLRSEAIKAARRIPGWHEQSAGVFVTHAAPLCILHFGLQLARQRAFLRQERRRARMEEEALRHDRAQYEITKRPDWVPRAYLPGPQVKRVKLNVGGQVFEVSAPVLQRDPHSLLAALCDESCPLKTDTDGTIYVDRDWWLFRYLLKFLRDGALPSDRTLLAQLYREAGYWRCSSLRTAIEETQLQLYRGEYEVDASGGVVPKKDRPTRKGWWNTLPNWWEPQAGAPKADDVTLTKDEAKSFEKLRAAAEKHKVTAAPDQWWVANEYHGQRFASLSSKPDEVVAPPGSKD-VLAETASTWSYG 337
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BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A7S3ZZW9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.120e-51
Identity = 112/257 (43.58%), Postives = 153/257 (59.53%), Query Frame = 1 
Query:   10 GSTSWLRDIDYITEKMGESLSLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDG--TAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIEE-QMHLFRSTFELDASG--TTRRRPREEK----------VDSPATAVAEEVDTTQ--KTGDWWTG-SEYNGRRY 726
            G  +  +D+  +  ++   L LE TVL  RA EL+ +A K ARQRAFLREER+RAR E+E + ++ A L   D D++ P   L    +KR+RLNVGGQ FE +   L  DP SLLAAL  +  PL  D  G   AYVDRDWWTFR +L FLRDGVLP+  +L   LY EA +WR GSL+RA+EE  +HL R+  ++DA G  T  ++ +E K            +P+++  +E +  +  K  DWW    +Y G R+
Sbjct:   23 GGGAMTQDLGGLERELSSRLELEHTVLEARAQELRREARKQARQRAFLREERKRARDEKEAIIRDAAKLEHRDKDDWFPRDYLDATPQKRLRLNVGGQIFEINVAKLDNDPDSLLAALAAEDCPLFGDDRGKRVAYVDRDWWTFRHVLAFLRDGVLPASPSLALPLYREAAFWRLGSLQRAVEETHLHLTRTKIDVDAKGEVTEEKQTKESKFWLSKPNWWEAQAPSSSKKKEGEKGEDDKDPDWWKDRDDYRGARF 279
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BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A7S2R746_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R746_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.090e-45
Identity = 111/264 (42.05%), Postives = 144/264 (54.55%), Query Frame = 1 
Query:   70 SLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLP----DPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPL----------------KVDGD-----------GTAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIEE-QMHLFRSTFELDASG----------------------TTRRRPREEKVDSPATAVAEEVDTTQKTGDWWT 699
            SLE  V+  R+ +L+ +AL+LARQRAFLREER++AR EE+ + ++TA L+     ++ P  CL     DP  +R+RL VGG+ FE S+ VL +DP SLL ALC +  PL                +VDG+           GT  VDRDWW FR IL FLRDGV+P D T   QLY EA +WR  SL+RAIEE  ++L R  FELD  G                      +TR+   +E   + A A AE+    Q  GDWWT
Sbjct:   35 SLESCVVQARSEKLEREALRLARQRAFLREERKKAREEEQAIERDTALLDFVRRPDWWPGECLDGAAGDP-ARRVRLRVGGELFEVSKDVLCKDPGSLLCALCAEDCPLMLTRRGRPGGEGEGEDQVDGEREDEGTERRTPGTVVVDRDWWLFRLILCFLRDGVVPRDRTTALQLYKEASFWRLESLERAIEEAHLNLSRKQFELDDKGEVSVSELEDKDKFWKSRKNWWESTRQSKEDEDKKTAADAAAEQDAAAQ--GDWWT 295
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BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A7S3LJB0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LJB0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.310e-43
Identity = 97/271 (35.79%), Postives = 153/271 (56.46%), Query Frame = 1 
Query:   55 MGESLSLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIEEQM---HLFRST--------FELDAS-GTTRRRPREEKVDSPATAVA-------EEVDTT----QKTGDWWTGSEYNGRRYNETPAVAEVAEALQRDGVKFATAT 798
            + + L LE   L +R  +++A+  K A ++  L +E ++ ++++  L Q+  +        +  +  LP  D +RI+LNVGG+ FE++E VL+RDP SLLAAL  D  PLK D +GT ++DRDWW FRF+L FLRDG +P D  LL+QLY EAG++   +++ AI E +   H+   +          L+AS G T RR  EE       A+        EE++      +K  DWWT S Y GR ++++ + A+V +  +++   F T+T
Sbjct:   15 ISQRLDLERQDLEERVEQVRAEYSKFAHRKLVLDDEWKKLKLDQARLEQDKKNFEFARKSSWFQSTLLPTSDLRRIKLNVGGKLFETTERVLKRDPGSLLAALVSDDAPLKEDEEGTIFIDRDWWLFRFLLAFLRDGRIPKDQDLLSQLYREAGFYNLETIRHAIREFLDPNHIVERSAAMPLSQLHRLEASLGKTMRRIEEENQTDAVNALKRGLEKQYEELEMKANEQEKEKDWWTSSRYKGRDFDDSTSWAKVDKGWEQN---FLTST 282
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BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A7S3ME34_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3ME34_9STRA)

HSP 1 Score: 151 bits (381), Expect = 7.160e-40
Identity = 98/254 (38.58%), Postives = 133/254 (52.36%), Query Frame = 1 
Query:   70 SLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTA-YVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIEEQMHLFRSTFELDASGTTRRRPREEKVDSPATAVAE-------EVDTTQKTGDWWTGSEYNGRRYNETPAVAEVAEALQRDG-VKFATATTW 804
            SLE  V  +R  +L A   +L RQRAFLR+ERRR R+  + + +    L +    +++P    P   E  + +NVGG  FES  ++L+RD  SLLA LC    P+  D DG   Y DRDWW FR+++ F+RDG LP D TLL+QLY EA +W   S++RAIEE+    RS    D S T + +    K+ S   AV E       +    +K  DWW  + Y G+ Y            LQ+D  V   T  TW
Sbjct:   22 SLESAVAGERVAQLIARTEQLLRQRAFLRDERRRLRISTDKIEERKKALTIIQRPDWLPESLKPTA-EAHVLINVGGLMFESPVSILKRDEKSLLAQLCSPNPPVLPDPDGGFFYFDRDWWLFRYVMAFMRDGTLPEDRTLLSQLYREAVFWNLSSMQRAIEEERLHLRSALHPDGS-TDKNKVWWRKLPSWWQAVDEAKNKEKTDAAAVKKKEDWWLDTSYKGKTY------------LQKDAKVDKPTTATW 261
[Close]
BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A6H5K801_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K801_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.920e-36
Identity = 69/101 (68.32%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 MDIGSTSWLRDIDYITEKMGESLSLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQ 303
            MDIGS+ W+R++D I  +M E LSLEGTV+ QRA+ELQA+A KLARQRAFLREERRRARM+EE+LR E ADL++T +DE++PA CL    EKR+RLNVGGQ
Sbjct:    1 MDIGSSGWMRNVDQIARQMEEKLSLEGTVVVQRASELQAEAQKLARQRAFLREERRRARMDEEVLRLEKADLSMTKDDEWIPAECLAHHSEKRVRLNVGGQ 101
[Close]
BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A2P4YP51_9STRA (BTB domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YP51_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.000e-33
Identity = 86/250 (34.40%), Postives = 132/250 (52.80%), Query Frame = 1 
Query:   61 ESLSLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIE-EQMHLFRSTFELDASGTTRRRPREEK--VDSPA------------TAVAEEVDT-TQKTGDWWTGSEYNGRRYNETPAVAEVAEA 762
            E   L  TV+  +   L+    ++A+QRAF+R E+R+  ++  LL  E      + + ++      P   ++R+ ++VGG+ FE S  +  +DP SLLAA   D  PL     G   VDRDW  FR IL+FLRDG+LPSD  LL  LY+E+ +WR  S+ +AIE + + L++ T   D    TR    ++K  +DS A            +  A++ DT  ++  +WWT S+Y G  Y +  A  +V  A
Sbjct:   46 EQTLLHRTVVDSKRQNLELQYERVAKQRAFIRREKRKLLLQHALLTSERERFEASRSSDWFCLAAFPAASDRRVTVDVGGELFELSAALASKDPASLLAAFVHDDSPLTAAESGCFRVDRDWRLFRHILRFLRDGILPSDPKLLRDLYMESEFWRFESVLKAIETKNLELWQFTHNDDGKAATRDVDAKDKEPMDSSAWWTWSPAWRGATSGDAKKADTGEEEPEEWWTKSKYKGTDYMDILAKDKVKVA 295
[Close]
BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: A0A8K1CRI1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRI1_PYTOL)

HSP 1 Score: 131 bits (329), Expect = 1.610e-31
Identity = 72/179 (40.22%), Postives = 107/179 (59.78%), Query Frame = 1 
Query:   61 ESLSLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIE-EQMHLFRSTFELDA 594
            E   L  TV++ +  +L++   +LA+QRAF+R E+R+  ++  LL  E    + +   ++      P   ++RI L+VGGQ FE S  V  +DP S+LAA   D  PL +   G   VDRDWW FR++L FLRDG+LP D  LL +LY+E+ +W+  SL++AIE + M L +   E DA
Sbjct:   72 EQALLHQTVVSSKKQQLESQHERLAKQRAFIRHEKRKLLLQNALLDSEKERFDASLTSDWFCLSAFPTVHDRRITLDVGGQLFEISSHVALKDPNSMLAAFVADDSPLSMLECGCFRVDRDWWLFRYVLHFLRDGLLPPDPKLLRELYIESEFWKIDSLRKAIEMKNMELLQIKQESDA 250
[Close]
BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Match: W2KIH1_PHYPR (BTB domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2KIH1_PHYPR)

HSP 1 Score: 129 bits (325), Expect = 1.910e-31
Identity = 88/284 (30.99%), Postives = 144/284 (50.70%), Query Frame = 1 
Query:   61 ESLSLEGTVLAQRANELQADALKLARQRAFLREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGGQTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTAYVDRDWWTFRFILKFLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIE-EQMHLFR-----------------STFELDA------SGTTRRRPREEKVDS-------PATAVAEEVDTTQKTGDWWTGSEYNGRRYNETPAVAE-VAEALQRDGVKFATATTWSTGV 816
            E   L  TV+A +   L+    + A+QRAF+R E+R+  ++  LL  E    + + + ++      P   ++R+ ++VGGQ FE S +V  +D  SLLAA  +D  PL    +G   VDRDW  FR IL+FLRDG+LPSD  LL  LY+E+ +WR  SL +AIE + + L++                 S + LD       +GT + + +E+K  +        A A+ ++ ++ +++  WW  S+Y G  Y +  A  + V +  +       T  TW+  +
Sbjct:   44 EQTLLHRTVVASKRQNLELQYERFAKQRAFIRREKRKLLLQHALLASERERFDASRSSDWFCLASFPAASDRRVTVDVGGQLFELSASVALKDSASLLAAFVQDDSPLTASENGCFRVDRDWRLFRHILRFLRDGILPSDPKLLRDLYVESEFWRFESLLKAIETKNLELWKLNENGSTKAATKETKDSSEWWLDPPSWWGNTGTNKAKDKEKKPKTLQNTFKKSAMAIVKKGESDEESEAWWKDSKYKGTDYMDILARGKSVHDDARTPRSPLVTNHTWAASM 327
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1169.1081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVC9_ECTSI2.330e-9564.73BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YWA5_9STRA1.280e-7543.75BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3ZZW9_9STRA1.120e-5143.58Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2R746_9STRA8.090e-4542.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3LJB0_9STRA3.310e-4335.79Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S3ME34_9STRA7.160e-4038.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6H5K801_9PHAE1.920e-3668.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4YP51_9STRA8.000e-3334.40BTB domain-containing protein n=1 Tax=Phytophthora... [more]
A0A8K1CRI1_PYTOL1.610e-3140.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2KIH1_PHYPR1.910e-3130.99BTB domain-containing protein n=8 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1169contigH-paniculata_contig1169:20110..27079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.3
Seed ortholog evalue6.1e-77
Seed eggNOG ortholog2880.D7FVC9
KEGG rclassRC00460,RC00461
KEGG koko:K11835,ko:K17868,ko:K21922
KEGG ReactionR11166
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
EggNOG free text desc.protein homooligomerization
EggNOG OGsKOG2723@1,KOG2723@2759
EC3.1.1.97,3.4.19.12
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03012,ko04121
Exons8
Model size963
Cds size846
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928877.1754518-UTR-H-paniculata_contig1169:20109..202261622928877.1754518-UTR-H-paniculata_contig1169:20109..20226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1169 20110..20226 -
1691480653.712017-UTR-H-paniculata_contig1169:20109..202261691480653.712017-UTR-H-paniculata_contig1169:20109..20226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1169 20110..20226 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928877.1956103-CDS-H-paniculata_contig1169:20226..203221622928877.1956103-CDS-H-paniculata_contig1169:20226..20322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 20227..20322 -
1691480653.7282896-CDS-H-paniculata_contig1169:20226..203221691480653.7282896-CDS-H-paniculata_contig1169:20226..20322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 20227..20322 -
1622928877.2136917-CDS-H-paniculata_contig1169:20443..205631622928877.2136917-CDS-H-paniculata_contig1169:20443..20563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 20444..20563 -
1691480653.735767-CDS-H-paniculata_contig1169:20443..205631691480653.735767-CDS-H-paniculata_contig1169:20443..20563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 20444..20563 -
1622928877.2312424-CDS-H-paniculata_contig1169:21045..211771622928877.2312424-CDS-H-paniculata_contig1169:21045..21177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 21046..21177 -
1691480653.7443652-CDS-H-paniculata_contig1169:21045..211771691480653.7443652-CDS-H-paniculata_contig1169:21045..21177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 21046..21177 -
1622928877.2451067-CDS-H-paniculata_contig1169:22067..221401622928877.2451067-CDS-H-paniculata_contig1169:22067..22140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 22068..22140 -
1691480653.7518473-CDS-H-paniculata_contig1169:22067..221401691480653.7518473-CDS-H-paniculata_contig1169:22067..22140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 22068..22140 -
1622928877.26619-CDS-H-paniculata_contig1169:22311..224331622928877.26619-CDS-H-paniculata_contig1169:22311..22433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 22312..22433 -
1691480653.7592037-CDS-H-paniculata_contig1169:22311..224331691480653.7592037-CDS-H-paniculata_contig1169:22311..22433Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 22312..22433 -
1622928877.2848759-CDS-H-paniculata_contig1169:26315..264391622928877.2848759-CDS-H-paniculata_contig1169:26315..26439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 26316..26439 -
1691480653.7666295-CDS-H-paniculata_contig1169:26315..264391691480653.7666295-CDS-H-paniculata_contig1169:26315..26439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 26316..26439 -
1622928877.3006973-CDS-H-paniculata_contig1169:26687..267371622928877.3006973-CDS-H-paniculata_contig1169:26687..26737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 26688..26737 -
1691480653.7744782-CDS-H-paniculata_contig1169:26687..267371691480653.7744782-CDS-H-paniculata_contig1169:26687..26737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 26688..26737 -
1622928877.3180444-CDS-H-paniculata_contig1169:26950..270791622928877.3180444-CDS-H-paniculata_contig1169:26950..27079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 26951..27079 -
1691480653.7828524-CDS-H-paniculata_contig1169:26950..270791691480653.7828524-CDS-H-paniculata_contig1169:26950..27079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1169 26951..27079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1169.1081.1prot_H-paniculata_contig1169.1081.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1169 20227..27079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1169.1081.1

>prot_H-paniculata_contig1169.1081.1 ID=prot_H-paniculata_contig1169.1081.1|Name=mRNA_H-paniculata_contig1169.1081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MDIGSTSWLRDIDYITEKMGESLSLEGTVLAQRANELQADALKLARQRAF
LREERRRARMEEELLRQETADLNLTDNDEFVPARCLPDPDEKRIRLNVGG
QTFESSETVLRRDPTSLLAALCEDAGPLKVDGDGTAYVDRDWWTFRFILK
FLRDGVLPSDATLLTQLYLEAGYWRCGSLKRAIEEQMHLFRSTFELDASG
TTRRRPREEKVDSPATAVAEEVDTTQKTGDWWTGSEYNGRRYNETPAVAE
VAEALQRDGVKFATATTWSTGVRDVCPRCTW*
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mRNA from alignment at H-paniculata_contig1169:20110..27079-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1169.1081.1 ID=mRNA_H-paniculata_contig1169.1081.1|Name=mRNA_H-paniculata_contig1169.1081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6970bp|location=Sequence derived from alignment at H-paniculata_contig1169:20110..27079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATATCGGCTCAACTTCATGGCTACGAGACATTGATTACATCACGGA
GAAAATGGGGGAAAGCCTGAGTCTGGAAGGCACTGTACTTGCTCAGCGAG
CCAATGAGCTCCAAGCCGATGCACTCAAGGTGCACCGAAAATCTTCGTGA
TCCTGGCATGCTCGTATTTGTATCTGTATATATGGACCATATCTCTATCT
CACGGTTAACTGTTGTCTATCGCTTGCAGCCACCTGTAGTTACAGAGGCA
GCACTGTAGCATGCATGGTAAAGTGAGGAATGTACGCTAATGCTGCGACT
CCCTCTATCCGTCCCCTATTGCTACGGCACGCTACACTCCAGCTGGCTCG
TCAACGTGCCTTCCTCCGCGAAGAACGACGTCGGGCTCGCATGTAAGCTG
CTTGCGCGTGTGCTCTCTCTCTCTCTTAAGGCTGTGTCGCTGGTCCGCTG
GTCGATGACTAATTAACTAATACTAAGTCAGTAGAGACAGGTCGTTCTCG
GAAGCAGTGAAGCGGAGTGAGGCAGTGGAAAGTATGTGAGGTTGCCCACT
CCTCGTTGGTTTGTTTATCGCCGCTGCGCCATATTTTATGTATGTCTGCG
TTCATCATCCCACGACCCACATCCCACATCCCAATCCCAGGGAGGAGGAA
CTACTTCGCCAAGAAACGGCGGACCTCAACTTGACTGACAACGACGAATT
TGTCCCCGCCAGGTGTTTGCCAGACCCAGACGAAAAACGAATACGACTCA
ACGTAGGAGGACAGGTGGGCGTGTTGGTGCTAATCTGGAACTGTCGACGA
GTATCAAGTATTGAATATCACTCGGATTCACCTAATTTATTGATGCATTC
TCCAAGGATTCCTCTGGACTTCCGGCTAACGCGAAACACTCAGAGCGACA
TCCAAACTGAATAACGCATGGCACTAAGAAACGATGAGATTGTTGCACAC
TGTGCGGCACCGTCGATCTATGATTTGGTTGTGGAAAAGCTTGAAGTTTA
ATCACGAGGACAGAGGACTTAGAAAGGTATACCTCGCGATTCTTGGTCAT
TCTGAGATATAGTTGACAGCGACTCGAAGGGGGTATGATGAATTTGTAAC
CACTTGAATTCCGCGCTGTTTTTAGGCTGATCACCAATCAATCCTTCCTT
CTGCACGCTCGTTAAGGACAAACGTAAAAATACAAACAAGGTGTTGCATA
GTAGTGCTCCTAAGTAACGGATCATCCCGCCGAGGCCCTTGCATCGCTTT
CTGTCCAGAAAACGCGAGGTATCCTCCATTTAATTTACTAAGTCGGGCGT
TAGCGTTTCGTGTCCGTGTTCTGCCGATTTTTTGCGCTTTCTTAATCGCC
TGATGTCCACCGCCGATCTCCGCAAACTGACCCGCTGTGAGGGGCTCATA
CTGTCTGTCACTTGTTGATCGTCTGCTACATTTGTTTGATCTTGTGGCAG
CAACAGCAGCCAGACACATACAACGCCTAGGCAACTATAGACTCGAGACA
ATCTGCAACTAGCAAATAGCCAGCAGATTAACCTTGTTAAAGTATGGCTT
CGTAGCCGGAGTCAACGGCCAGTAGTGTGTAAGCACTGTAGTGTGAAGTG
CAGTAGCAGCACTTGGTGTTAAGAGATAGGAGTTTGCCAACCTATCTAGA
CAGTGCTCAGTAGCACGGCATTGCTGCAGGCATCACAGCAGTAGAAGCTG
TTGGAAGCACAGGTACCGATATCTGTATTCTAGACCTTGTAACAATGTTA
GGTCACAGCAAAAAATCGGACCAGCTAGTCCCGCTTCGACTAAACAAATT
TCTGCTACGTTTCTTGAGATAGTTCCGGGAAATTGTGCTGGGAGACACCA
GCGGGAGTTTGCGGGTGATTGTTCCTTCCACTTCCAAGCAATTATCCGGG
TGCTTGTCCTGGATCAATCGAATGGGGCTGACCCACCTCAAACACTCTCT
CACAACAGCCACAATGACTTCAGCAGTCAGCTAGTCTGTGGTTCGGTCTT
CTTTCTTTGTCTAAGTCCTAATTAATAGAAGGCATGCAGTAGTTCAATAT
ATTCGATCTCAACTGGTGCACACTGCATCCCAGCTTCCCAGCTTTCCCTG
CGTTTGGCTGCCTCACGGAGCCTACGCCAGCCTTTGTCGCCACTTACTGG
TGCCCTGCAGCAGATACATCAACAGGTTATGAGCTTCGATAGCTTATGAG
CACCAACAAGCCTACGCTCGACTTTTAACCATTACGATAACCTTAAAGCC
AAACCCATCGGTTCTAGTGAGCGATAGCAAAGCGCCGTGTGTTCGTCGGC
AAAGCTTGTATATGTTCATTGGCGAAGCTTGTATTTGTTCGTTGGCGGAG
CCTACATCTAACCGATCGAAATTGGAACAGCGCATCTGTGTGCGTTGGCA
GAGGATTCATCTGCGACAACCTGCGGTGAACGACGCCATCAAAATAGCGA
ACAATTTAGCTTAGGACGCGCTGCGACAATGTTTATGACCCCTAATTCCT
CAAGTATCCAATATCACGAGATCACGAAGTTTGCCTTTTCCAGTCCACTG
CCCCTTATTTTATTGAGAATGGGACCGCATACGCCTCAGGCAGTCAGCGA
CATAATATGATGTAAAAGTAAAGATAAAGACGGCAACGCGCAAACGAATA
GACGGGAAAAATTCAGGGACAGCAACACCCAACACGTGAGAGTACACACG
CACGTACGTGTTAAGGGTGCCCTTACAGTATCTATGCGGCAAGAACGCCT
CACGGTTTTGTTTTAGAAAGACAGTGAGTACTTCGCCTGCTCTGTGACAT
GGCGATGCTTCACGATATTATATCCTCAATTATTGGTGACTGATTCATTA
TGGAAGAGGTGATGAGAATGCATTGATAATGTAGTGGAAGAGGTGAAGGT
ATAACATGGAGAATATAGATAGCCGCAGAACGCCTATCGAAGAGAAACGT
ACATACGCCACAGCGGCATCGCATTTGGTGCCAAAGGTCGGAGCATTATA
ACGGTCGGTTCTGGCAATTGGCAGAAATAGATGTTTTGGTTCGGTGCGGC
GCGATCGAATACCGCTCGGATGCACTAATTTTTCTTCGAAAAGACGGAAA
TATGCTCTGTTCATCCCCGGAATTTCTCGCCGTTCTTCTTTCATGGCATG
ACGTTAACCCTTTTAGCAATTTTTGTTCCAATTAACAGAAGCTGGTGTGT
CCCCGTGACGCGAAATTGACTGTTTTGTAATATATATATATATATATGAC
TTGGTGAGGGGTCATTTTTGGTATTGCTTCGTGTCACAAGAGTCTTGTTC
CACTGGCTCTCCTGGCATGAGTTCGTATCGGTTTTACTTACCGAAGCTTG
CACGATAGCTGATGAATATGCCGATACGTCAATACCCCGCTTATTCTACT
ACTATTCGCCGTTCCAAGACAACGTCCGTTTGTGTAGCAGGTGCCTTATG
TATATTTTAATCGGCACACTTACCTAAACCATTATACGTGACACCCGACA
CCCCAACACCTGCTGTACGTACATAACGACGCGAGAAACTGATGTGCCGC
AGCTACTCAAAGAAAAAGTGTCCCAAAGCACATAGCCGATACGCTATATA
TAGTCTAAAACAGGTAACAACACTTAACTATTTAGACACCTTTTAGGGGA
GTAGATTGAAAGAGGCTGTTCCGGAACAAAAGCAAATCTGATAATACACA
AAGTCGAGTACTGCAGTTGTTGTGCGTAGAACCATGCCAACTCCCTGTCT
GTGCTGTGTATAATGACTGTACTGGGCTAGACTGGCTCTCTGGGCAGCGG
TGGCTCCCATCTATCCCTATAATCGTATCATTAGATGGGTGCTATATCTT
TTTTGCCGCTGTTTCCAGATGATGATTAGGTGAGAGTTGTGTCGGGTCCG
GCGCCGAAGGCTTAACCCCTAACTAACTCACAAATAAGTCGTGGTCCATT
TAGGATCTATATCCATGGTTGAATGCCCATTTTACTTGATTGGTATATCT
TGTATCTTGTATTTTGTTGTCCCTGCAGTAAATATTTCGTATGAGTGACG
CGTTAGGAGGTGTAGGCTGTCTCTGGTCAAGCAACCGAGATATTTTCGGA
GATATCAAAGTTTGCATTGGCCGCTGAAATGGTTACCTGCAGTCCTTGTT
TGGGAAAACCTTGTTGGTTGCCGTTGTTCGTCCCCACAGAACAAACCGTT
TGCGAAAATGATTTGTGGTCACTTGGGGGGTCTTACGGGAATCGATTCCG
CATGCAGTCTATCGATCAATTTCCAATCTTCTCGACTCAGCAACCGCCGC
CCCCCCCCCCCCCGAAAAAAATTGCGGGACTGCCTGGTGTGTATATTAAA
AAAAAAGGTATCAGTGGCGCGCTGGAGTGTAATGCCGAATTATCTACTGG
CTTGAGCGATAATTGTCCTCGAGCGAGCACTACCGTATAACTATTGACTG
CGCCATGTTGTATTGCACTGTACTGTACGGTACGGTACTGTAGTTGTTTT
GTTGGCTGTTCCGACTACTTGTGTTACAGTTACGTTTACCCGAGATGCAA
CGCAACCTACAGAACAGTACAGCGCAATTATCTCCAAATTTTTAATACTC
TCGTGAATTTGCGTCCTTTCCCCCCTGTTGTCACGCGTATCCACAGACCT
TTGAATCTTCCGAGACAGTTCTACGACGAGATCCAACTTCTCTTCTAGCT
GCTCTCTGTGAAGACGCTGGGCCGCTTAAGGTTGACGGTGACGGAACAGC
ATATGTGGACAGAGACTGGTGAATGTCGTCACTGTCAGGCACTGTACAGT
GCTTTATGTGCGTTATAGTGATTTCGACATATCCTGTTGGAATTCCGAAT
GGCTCGTACTCTATAGTGCAAAGCGTATTTGTTCAACACGCGACACATTT
GACGTTCAAAATAACTTTTGGTGCGCCCACTGCCCACAGGTGGACGTTTA
GGTTTATCCTGAAGTTCTTGCGGGACGGGGTTTTGCCGAGTGATGCAACG
CTGTTGACACAGGTGCGAACAGCATATCTGTTTTATTTGCAAGAAAGTCT
CAGTTCTTACCTGTATCTGAGGGAGGTGGTGGTGCCGGTGAATCTAGAAT
AGGTTTTGAGGCGTCACGAAGCCCCTATTTACCTAATGTGTATGCACTGC
AGGGAGGTTTCGGACGCGGTGGCAATGTTTTTATGCCTACCAACGATATT
GTGCATAAGCATTTTGCTCTACCAACGGGCGACCGTATCTACGAACGGTG
AATAGTATATGTTCCGTTGTATAAGCATTGCGCGCTCTCCGCCTACTCAC
GAGACACACATCTGTAGCACTTTGAATGAATTTCTTGCTCTGAAAGGTGC
GGTTCTCGAACAAAACACACCAACTCTCACCACCAAGCTATTGCTGCCGT
CGCCACACTCAGTTTTCGTGGCCAACTGGGTTCCAAAGTGCTTGACTTCC
TGCGTGACGGAAACGCCAACTCGGAATCATTGGCCAGAAGCTCACGAGCC
AAATGGATTGTATCAGTCACTTTCCCTACTACTTGGTCGTGGAAAGCCAG
TAAGATTGCCGTATTAAATCTATCTCGAGGGGAAAGATTGACGAGACGTC
GATCGCAGGGCTTCTTTTACCGTCCTCGACACAACCCCAGCCTCCCTTCT
TTGCTTGCAACACTACTATATGACATATCGGGACGGTATTCCTCATCTTC
AACCAGTACACAAAGCGAGAGAAAATTTTTAGCGAGTCACGGTTTGGGTG
TGATGGTTGATAACATACTTCACATAAGAATTTGCCTTTTAAGCAGAAGA
GTATGTTGAGGATCTTTGTAAGGCTCACTCGTTCTGGATGCTTGGCTACA
TGGGGTTTGCGACGTCGAATACATACCCTATGGTTGACCGCCCTATTTGC
AGCTCTATCTCGAAGCAGGATACTGGCGTTGCGGATCGTTGAAGCGTGCG
ATAGAGGAGCAAATGCACTTGTTCCGATCAACGTTCGAGTTGGACGCGTC
GGGAACAACACGAAGGAGACCTAGAGAGGAGAAGGTTAGCAATTTATTGT
TGCTATCAACGAATTCAGGGGTGTTGTGTTATAGGCTACGTGCTGCCATT
TTAAGGGAGAAAGCGCACTTTTATTATAACACGAACCTCATCAGGAGTGT
TGATTTAGTTAAGTTCTTGATATACGCTTTCTTCAAGAGTCATTCTGCTT
TTTGTACCATGTTAGCTGAGATATGTCTAACACTGTCTTCGCCCCAACGT
CCAGCAGGCATGGTGGTCTATGCTCCTCAACCCGCCCGATGCTGAAAAGC
TAGGCCGACGCTGTGCTATGCCTTCCTCACGCCCTTCGACAGGCGCTGTA
TGCGCTTGAAAGAGGATATCGGTAAAAAGCTTTAATTTACCTCCATCTTT
AAACCTCGTGGCTGCGTCTCTCTAGAGAATTATATCCCACAAGAAAATTT
ATCTCTTCGGTGTCCAGACTGCCACCCTGGCCTTCACCACTCGTTGAATT
TGCCCACCTGATACAGGTGGATTCGCCTGCTACTGCTGTCGCAGAAGAAG
TGGATACTACGCAAAAAACCGGCGATTGGTGGACGGGGTCAGAATACAAC
GGTCGGCGATATAATGAAACCCCTGCTGTTGCCGAGGTACATGTTGCCGC
AAAAGCCGCTGATTCACAATGGAAATCGATTCTATCCGCTGCTCAAATAT
TTTGCTAGATTTTGAAAAAAATACAGCTTGTGACTTGTCTATAAACAAAT
ATCACAGGTAGCGGAAGCTCTGCAGAGAGATGGTGTCAAATTCGCAACCG
CGACTACCTGGTCGACCGGTGTACGGGATGTGTGCCCACGTTGCACCTGG
TGATACGTCCTTCTTGGACGGAAACAGCATGCAAGACAAGTTCCAAAATA
ACGTACAAAACAAGACCCAAAACAAGATCCACGGGGTCTCGAGCAAGGGG
CGCCTCTGAGAATCTTTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1169:20110..27079-

>mRNA_H-paniculata_contig1169.1081.1 ID=mRNA_H-paniculata_contig1169.1081.1|Name=mRNA_H-paniculata_contig1169.1081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig1169:20110..27079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATATCGGCTCAACTTCATGGCTACGAGACATTGATTACATCACGGA
GAAAATGGGGGAAAGCCTGAGTCTGGAAGGCACTGTACTTGCTCAGCGAG
CCAATGAGCTCCAAGCCGATGCACTCAAGATGGATATCGGCTCAACTTCA
TGGCTACGAGACATTGATTACATCACGGAGAAAATGGGGGAAAGCCTGAG
TCTGGAAGGCACTGTACTTGCTCAGCGAGCCAATGAGCTCCAAGCCGATG
CACTCAAGCTGGCTCGTCAACGTGCCTTCCTCCGCGAAGAACGACGTCGG
GCTCGCATCTGGCTCGTCAACGTGCCTTCCTCCGCGAAGAACGACGTCGG
GCTCGCATGGAGGAGGAACTACTTCGCCAAGAAACGGCGGACCTCAACTT
GACTGACAACGACGAATTTGTCCCCGCCAGGTGTTTGCCAGACCCAGACG
AAAAACGAATACGACTCAACGTAGGAGGACAGGGAGGAGGAACTACTTCG
CCAAGAAACGGCGGACCTCAACTTGACTGACAACGACGAATTTGTCCCCG
CCAGGTGTTTGCCAGACCCAGACGAAAAACGAATACGACTCAACGTAGGA
GGACAGACCTTTGAATCTTCCGAGACAGTTCTACGACGAGATCCAACTTC
TCTTCTAGCTGCTCTCTGTGAAGACGCTGGGCCGCTTAAGGTTGACGGTG
ACGGAACAGCATATGTGGACAGAGACTGACCTTTGAATCTTCCGAGACAG
TTCTACGACGAGATCCAACTTCTCTTCTAGCTGCTCTCTGTGAAGACGCT
GGGCCGCTTAAGGTTGACGGTGACGGAACAGCATATGTGGACAGAGACTG
GTGGACGTTTAGGTTTATCCTGAAGTTCTTGCGGGACGGGGTTTTGCCGA
GTGATGCAACGCTGTTGACACAGGTGGACGTTTAGGTTTATCCTGAAGTT
CTTGCGGGACGGGGTTTTGCCGAGTGATGCAACGCTGTTGACACAGCTCT
ATCTCGAAGCAGGATACTGGCGTTGCGGATCGTTGAAGCGTGCGATAGAG
GAGCAAATGCACTTGTTCCGATCAACGTTCGAGTTGGACGCGTCGGGAAC
AACACGAAGGAGACCTAGAGAGGAGAAGCTCTATCTCGAAGCAGGATACT
GGCGTTGCGGATCGTTGAAGCGTGCGATAGAGGAGCAAATGCACTTGTTC
CGATCAACGTTCGAGTTGGACGCGTCGGGAACAACACGAAGGAGACCTAG
AGAGGAGAAGGTGGATTCGCCTGCTACTGCTGTCGCAGAAGAAGTGGATA
CTACGCAAAAAACCGGCGATTGGTGGACGGGGTCAGAATACAACGGTCGG
CGATATAATGAAACCCCTGCTGTTGCCGAGGTGGATTCGCCTGCTACTGC
TGTCGCAGAAGAAGTGGATACTACGCAAAAAACCGGCGATTGGTGGACGG
GGTCAGAATACAACGGTCGGCGATATAATGAAACCCCTGCTGTTGCCGAG
GTAGCGGAAGCTCTGCAGAGAGATGGTGTCAAATTCGCAACCGCGACTAC
CTGGTCGACCGGTGTACGGGATGTGTGCCCACGTTGCACCTGGTGAGTAG
CGGAAGCTCTGCAGAGAGATGGTGTCAAATTCGCAACCGCGACTACCTGG
TCGACCGGTGTACGGGATGTGTGCCCACGTTGCACCTGGTGA
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