mRNA_H-paniculata_contig11685.1079.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11685.1079.1
Unique NamemRNA_H-paniculata_contig11685.1079.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11685.1079.1 vs. uniprot
Match: A0A6H5JDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDV7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-5
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 2 
Query: 1136 PAALRHCEHKD-CSRRPSFNFRGLNARFCSAHKETNMVDVAHKTR 1267
            P   R C++   CSRRPSFN  G  A FCSAH++ NMVDVAHK R
Sbjct:  198 PVGTRTCQYDGGCSRRPSFNHPGRKAIFCSAHRQLNMVDVAHKAR 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11685.1079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDV7_9PHAE1.840e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11685contigH-paniculata_contig11685:3037..5053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1556
Cds size1143
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11685.1079.1prot_H-paniculata_contig11685.1079.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11685 3037..4641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928876.5776742-CDS-H-paniculata_contig11685:3036..33091622928876.5776742-CDS-H-paniculata_contig11685:3036..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11685 3037..3309 -
1691480653.4664893-CDS-H-paniculata_contig11685:3036..33091691480653.4664893-CDS-H-paniculata_contig11685:3036..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11685 3037..3309 -
1622928876.5897982-CDS-H-paniculata_contig11685:3771..46411622928876.5897982-CDS-H-paniculata_contig11685:3771..4641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11685 3772..4641 -
1691480653.4772615-CDS-H-paniculata_contig11685:3771..46411691480653.4772615-CDS-H-paniculata_contig11685:3771..4641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11685 3772..4641 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928876.6054811-UTR-H-paniculata_contig11685:4641..50531622928876.6054811-UTR-H-paniculata_contig11685:4641..5053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11685 4642..5053 -
1691480653.4864366-UTR-H-paniculata_contig11685:4641..50531691480653.4864366-UTR-H-paniculata_contig11685:4641..5053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11685 4642..5053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11685.1079.1

>prot_H-paniculata_contig11685.1079.1 ID=prot_H-paniculata_contig11685.1079.1|Name=mRNA_H-paniculata_contig11685.1079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=381bp
MATKRDLEAFLDFLQERGVSVLQMQGGLANFDPSAATDVNTTAGDGSQLA
TAPAGTGDAQQVAKKAIVSAFLRHMNRTSRRPGESNAGGGSGDSSSLERC
EQQRQQTGVHGEQYPAQEYQHEKDGRQHDIQCRAHNHQQPIIESLQRHMQ
QQQQHQQQKKQQQPFTNNQQTEDNSHVAQRKQQQQPLPDVNSTQQNAAAS
THSAAPTLATLPAAAAHSFAAEMDLELGTNTRCTAGAVSTAPAALRHCEH
KDCSRRPSFNFRGLNARFCSAHKETNMVDVAHKTRCQHAEGCRKHPGFGY
SGAKPSHCAEHRMAGMVDLKRGRRLATSGSNGTESAAATTTTTSAAFSPP
APAVGDTVASHHFSGLMLGAGNGSGGILAGT
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mRNA from alignment at H-paniculata_contig11685:3037..5053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11685.1079.1 ID=mRNA_H-paniculata_contig11685.1079.1|Name=mRNA_H-paniculata_contig11685.1079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2017bp|location=Sequence derived from alignment at H-paniculata_contig11685:3037..5053- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCTTTATTCTGACGAGGGGTGTCAAGTGTCAAGTGCCGCTGGCATTCT
CATTCTCAGATAAGTGCTGTGTGGCACCTCGAGAAGTCAGCTCTGCCTCT
CTCTCTCTCCTTGATGCATAACAATCAGAGATTCGTTCAAACCACCACCA
AGCACAGTCGGCCCTCTGCTCACATGCGCTGCTTTACTTGCAGGGCAAAG
ACGTAGCGGTCTCTGTTGTGGGAAGTTTAAGTTGCGACAAGCGATCGAGG
CCTGAGACACCTTTTGATCACTTGCGGAGGCAAAAAGGTCGCTGCTGTTG
TCTACGCTGCATGAGGGCTTGGACTGTATCGGCAGAGGAGTGTTGATCTG
CGCGTTTAACGTGAAGCGAACCTGTTGTTGTTGTTGGCGTGTAACTCCAT
CGTCCAATCATCATGGCGACGAAAAGGGACCTCGAAGCCTTCCTAGACTT
CCTGCAAGAGCGAGGCGTGTCTGTCCTGCAGATGCAGGGAGGCCTTGCCA
ACTTCGACCCTTCGGCGGCTACCGATGTCAACACCACAGCGGGTGACGGT
AGTCAGTTGGCAACTGCGCCCGCGGGCACGGGGGATGCTCAGCAAGTGGC
CAAGAAAGCGATAGTGAGCGCTTTCTTGCGGCATATGAACAGGACTAGCC
GCAGGCCTGGGGAAAGTAATGCGGGCGGTGGCAGTGGTGACAGCAGCAGT
CTTGAAAGATGTGAGCAGCAGCGGCAGCAAACTGGTGTGCACGGCGAACA
GTATCCAGCACAAGAATATCAACACGAGAAAGATGGACGACAGCACGATA
TTCAATGTCGCGCACACAACCACCAACAACCCATTATAGAGAGCCTACAG
CGGCACATGCAGCAGCAGCAGCAACATCAGCAACAGAAAAAGCAACAGCA
ACCTTTCACCAATAATCAACAAACAGAAGACAACAGTCACGTTGCCCAAC
GAAAACAACAACAACAGCCACTACCCGACGTGAACTCGACCCAACAAAAC
GCCGCGGCCAGCACGCACTCCGCCGCCCCGACCTTGGCGACCCTCCCCGC
GGCCGCGGCACACTCGTTTGCAGCAGAAATGGACCTCGAACTAGGAACTA
ACACAAGGTGTACGGCAGGAGCTGTTTCAACAGCGCCGGCCGCATTACGA
CATTGCGAGCACAAGGATTGCTCCCGGCGACCCAGCTTCAATTTTCGGGG
GCTAAACGCGCGGTTCTGTTCCGCGCATAAGGAGACTAACATGGTTGACG
TCGCACACAAGACACGATGTCAGCACGCAGAGGTTGGTGCGACGGTGTCC
GGGGAGCAGGAGAGAGGATTCAGTTTAACAGTCGACCCAAAAAAGACGGA
AGGGGAGGCGTGGGGCGCATACTTCCCGTTGTTTTACTTTGCTTCAACTA
TTAATGCAGTAAGGACCAAACAAATACTGTCTCGTGATGGATTAAACACG
TCTTGAAAAGTAACCCCACACTTCTAGTTGCTCTCAAATAACTCTATTCC
ACCACCTTCACCCCACGCCCAGCTTCTTGTCAGGGGCACGCAGCCTAAAA
TCGCACGACCGTCGGACTTGAAACATTTAATAATTTCCTGTCGCCTGTTC
CCCAGAGACCACCCTTGTCACGGCCGAGTGCCTGATGTGACTTCATCCGG
AACATCGAATCTTATTGTTGTCCTGTCTCTCCGACCTGCGCTCTGTCCGT
GGGCCCGGTAATTTACTTGCCCCCCTATGCCGTTCCGTACACAGGGCTGC
CGGAAGCACCCCGGATTTGGCTATTCCGGGGCGAAGCCATCGCATTGCGC
AGAGCATCGCATGGCGGGCATGGTGGACCTCAAGCGCGGACGACGTCTAG
CCACGTCTGGCTCTAATGGCACGGAATCAGCGGCGGCGACGACGACAACG
ACCTCCGCCGCATTCTCTCCTCCTGCTCCCGCGGTTGGAGACACCGTGGC
CAGTCACCATTTCTCAGGACTTATGCTTGGAGCAGGGAATGGCAGCGGGG
GTATCTTGGCGGGGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig11685:3037..5053-

>mRNA_H-paniculata_contig11685.1079.1 ID=mRNA_H-paniculata_contig11685.1079.1|Name=mRNA_H-paniculata_contig11685.1079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at H-paniculata_contig11685:3037..5053- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACGAAAAGGGACCTCGAAGCCTTCCTAGACTTCCTGCAAGAGCG
AGGCGTGTCTGTCCTGCAGATGCAGGGAGGCCTTGCCAACTTCGACCCTT
CGGCGGCTACCGATGTCAACACCACAGCGGGTGACGGTAGTCAGTTGGCA
ACTGCGCCCGCGGGCACGGGGGATGCTCAGCAAGTGGCCAAGAAAGCGAT
AGTGAGCGCTTTCTTGCGGCATATGAACAGGACTAGCCGCAGGCCTGGGG
AAAGTAATGCGGGCGGTGGCAGTGGTGACAGCAGCAGTCTTGAAAGATGT
GAGCAGCAGCGGCAGCAAACTGGTGTGCACGGCGAACAGTATCCAGCACA
AGAATATCAACACGAGAAAGATGGACGACAGCACGATATTCAATGTCGCG
CACACAACCACCAACAACCCATTATAGAGAGCCTACAGCGGCACATGCAG
CAGCAGCAGCAACATCAGCAACAGAAAAAGCAACAGCAACCTTTCACCAA
TAATCAACAAACAGAAGACAACAGTCACGTTGCCCAACGAAAACAACAAC
AACAGCCACTACCCGACGTGAACTCGACCCAACAAAACGCCGCGGCCAGC
ACGCACTCCGCCGCCCCGACCTTGGCGACCCTCCCCGCGGCCGCGGCACA
CTCGTTTGCAGCAGAAATGGACCTCGAACTAGGAACTAACACAAGGTGTA
CGGCAGGAGCTGTTTCAACAGCGCCGGCCGCATTACGACATTGCGAGCAC
AAGGATTGCTCCCGGCGACCCAGCTTCAATTTTCGGGGGCTAAACGCGCG
GTTCTGTTCCGCGCATAAGGAGACTAACATGGTTGACGTCGCACACAAGA
CACGATGTCAGCACGCAGAGATGGCGACGAAAAGGGACCTCGAAGCCTTC
CTAGACTTCCTGCAAGAGCGAGGCGTGTCTGTCCTGCAGATGCAGGGAGG
CCTTGCCAACTTCGACCCTTCGGCGGCTACCGATGTCAACACCACAGCGG
GTGACGGTAGTCAGTTGGCAACTGCGCCCGCGGGCACGGGGGATGCTCAG
CAAGTGGCCAAGAAAGCGATAGTGAGCGCTTTCTTGCGGCATATGAACAG
GACTAGCCGCAGGCCTGGGGAAAGTAATGCGGGCGGTGGCAGTGGTGACA
GCAGCAGTCTTGAAAGATGTGAGCAGCAGCGGCAGCAAACTGGTGTGCAC
GGCGAACAGTATCCAGCACAAGAATATCAACACGAGAAAGATGGACGACA
GCACGATATTCAATGTCGCGCACACAACCACCAACAACCCATTATAGAGA
GCCTACAGCGGCACATGCAGCAGCAGCAGCAACATCAGCAACAGAAAAAG
CAACAGCAACCTTTCACCAATAATCAACAAACAGAAGACAACAGTCACGT
TGCCCAACGAAAACAACAACAACAGCCACTACCCGACGTGAACTCGACCC
AACAAAACGCCGCGGCCAGCACGCACTCCGCCGCCCCGACCTTGGCGACC
CTCCCCGCGGCCGCGGCACACTCGTTTGCAGCAGAAATGGACCTCGAACT
AGGAACTAACACAAGGTGTACGGCAGGAGCTGTTTCAACAGCGCCGGCCG
CATTACGACATTGCGAGCACAAGGATTGCTCCCGGCGACCCAGCTTCAAT
TTTCGGGGGCTAAACGCGCGGTTCTGTTCCGCGCATAAGGAGACTAACAT
GGTTGACGTCGCACACAAGACACGATGTCAGCACGCAGAGGGCTGCCGGA
AGCACCCCGGATTTGGCTATTCCGGGGCGAAGCCATCGCATTGCGCAGAG
CATCGCATGGCGGGCATGGTGGACCTCAAGCGCGGACGACGTCTAGCCAC
GTCTGGCTCTAATGGCACGGAATCAGCGGCGGCGACGACGACAACGACCT
CCGCCGCATTCTCTCCTCCTGCTCCCGCGGTTGGAGACACCGTGGCCAGT
CACCATTTCTCAGGACTTATGCTTGGAGCAGGGAATGGCAGCGGGGGTAT
CTTGGCGGGGACGGGCTGCCGGAAGCACCCCGGATTTGGCTATTCCGGGG
CGAAGCCATCGCATTGCGCAGAGCATCGCATGGCGGGCATGGTGGACCTC
AAGCGCGGACGACGTCTAGCCACGTCTGGCTCTAATGGCACGGAATCAGC
GGCGGCGACGACGACAACGACCTCCGCCGCATTCTCTCCTCCTGCTCCCG
CGGTTGGAGACACCGTGGCCAGTCACCATTTCTCAGGACTTATGCTTGGA
GCAGGGAATGGCAGCGGGGGTATCTTGGCGGGGACG
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