mRNA_H-paniculata_contig11679.1072.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11679.1072.1
Unique NamemRNA_H-paniculata_contig11679.1072.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11679.1072.1 vs. uniprot
Match: A0A6H5K7Y7_9PHAE (Signal peptidase complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7Y7_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.700e-7
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = -1
Query:  332 ESWKVGKYFDVEGYFDEWGMGDVAERLVQKLEKKIKDRAK 451
            E W VGKYFD EG FDEWGMGD  + LV +LEK+ +D+ K
Sbjct:  145 EQWHVGKYFDYEGNFDEWGMGDAVKNLVTRLEKRARDKKK 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11679.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7Y7_9PHAE5.700e-762.50Signal peptidase complex subunit 2 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11679contigH-paniculata_contig11679:3850..4609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size760
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11679.1072.1prot_H-paniculata_contig11679.1072.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11679 4125..4523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.6211321-UTR-H-paniculata_contig11679:3849..41241622928875.6211321-UTR-H-paniculata_contig11679:3849..4124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11679 3850..4124 +
1691480653.1612775-UTR-H-paniculata_contig11679:3849..41241691480653.1612775-UTR-H-paniculata_contig11679:3849..4124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11679 3850..4124 +
1622928875.6919372-UTR-H-paniculata_contig11679:4523..46091622928875.6919372-UTR-H-paniculata_contig11679:4523..4609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11679 4524..4609 +
1691480653.1822863-UTR-H-paniculata_contig11679:4523..46091691480653.1822863-UTR-H-paniculata_contig11679:4523..4609Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11679 4524..4609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.671652-CDS-H-paniculata_contig11679:4124..45231622928875.671652-CDS-H-paniculata_contig11679:4124..4523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11679 4125..4523 +
1691480653.174881-CDS-H-paniculata_contig11679:4124..45231691480653.174881-CDS-H-paniculata_contig11679:4124..4523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11679 4125..4523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11679.1072.1

>prot_H-paniculata_contig11679.1072.1 ID=prot_H-paniculata_contig11679.1072.1|Name=mRNA_H-paniculata_contig11679.1072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MTVTNTIIPTAHFSFFSFFFALSLIFFSSFCTSLSATSPMPHSSKYPSTS
KYFPTFQDSGRAIKKERKKDGSNKWVHECSLFSQHHSPPTPTHNIISPRS
PEKFMQDKTILQTQARANRRASINEEQHRYNA*
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mRNA from alignment at H-paniculata_contig11679:3850..4609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11679.1072.1 ID=mRNA_H-paniculata_contig11679.1072.1|Name=mRNA_H-paniculata_contig11679.1072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at H-paniculata_contig11679:3850..4609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGACGAACTTTGCATGTTTACACACTTCCTGTCGCCAAAAAAGCAGTAAT TTCATTAATGTCGGTATCAATAATAACATACGATCGCATCTAGAAAATAA TGGGCTCATGGCTGTTTCGGAACAAAAACGAGTTCCTACCCTTTTGTCAA GTTTGTTCATGGCTGACCATTGCTTCCACCATCTTCGAAAACAAAAAAAA AGGCAGCGGCAGATATCTACCTCCTCACGCCACAAAGTACCCCAAATATG GTCTTGACCGCGAAAGTAATGGAAAATGACCGTGACAAATACTATAATAC CAACCGCTCACTTTTCTTTCTTTTCCTTCTTCTTTGCCCTATCCTTGATC TTCTTCTCTAGTTTTTGCACCAGTCTCTCAGCCACATCGCCCATGCCCCA TTCGTCGAAGTACCCCTCCACATCAAAGTACTTTCCCACCTTCCAAGACT CTGGGCGGGCCATAAAAAAAGAAAGAAAAAAAGACGGGTCAAACAAGTGG GTGCATGAGTGTAGTCTCTTCTCGCAACACCACTCCCCCCCTACACCGAC ACACAATATTATATCGCCCAGGTCTCCAGAGAAGTTCATGCAAGACAAAA CCATATTACAAACACAGGCGAGGGCAAACCGGAGAGCGTCCATCAATGAA GAACAACACAGATACAACGCATGATTTGGCTTCATTACTACAACCAACCG CGAACAAAGTCACGAACTTCAAAATGCAAGATACAAAATACAAGATACAA GATACAAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig11679:3850..4609+

>mRNA_H-paniculata_contig11679.1072.1 ID=mRNA_H-paniculata_contig11679.1072.1|Name=mRNA_H-paniculata_contig11679.1072.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig11679:3850..4609+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGTGACAAATACTATAATACCAACCGCTCACTTTTCTTTCTTTTC
CTTCTTCTTTGCCCTATCCTTGATCTTCTTCTCTAGTTTTTGCACCAGTC
TCTCAGCCACATCGCCCATGCCCCATTCGTCGAAGTACCCCTCCACATCA
AAGTACTTTCCCACCTTCCAAGACTCTGGGCGGGCCATAAAAAAAGAAAG
AAAAAAAGACGGGTCAAACAAGTGGGTGCATGAGTGTAGTCTCTTCTCGC
AACACCACTCCCCCCCTACACCGACACACAATATTATATCGCCCAGGTCT
CCAGAGAAGTTCATGCAAGACAAAACCATATTACAAACACAGGCGAGGGC
AAACCGGAGAGCGTCCATCAATGAAGAACAACACAGATACAACGCATGAA
TGACCGTGACAAATACTATAATACCAACCGCTCACTTTTCTTTCTTTTCC
TTCTTCTTTGCCCTATCCTTGATCTTCTTCTCTAGTTTTTGCACCAGTCT
CTCAGCCACATCGCCCATGCCCCATTCGTCGAAGTACCCCTCCACATCAA
AGTACTTTCCCACCTTCCAAGACTCTGGGCGGGCCATAAAAAAAGAAAGA
AAAAAAGACGGGTCAAACAAGTGGGTGCATGAGTGTAGTCTCTTCTCGCA
ACACCACTCCCCCCCTACACCGACACACAATATTATATCGCCCAGGTCTC
CAGAGAAGTTCATGCAAGACAAAACCATATTACAAACACAGGCGAGGGCA
AACCGGAGAGCGTCCATCAATGAAGAACAACACAGATACAACGCATGA
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