mRNA_H-paniculata_contig1167.1071.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1167.1071.1 vs. uniprot
Match: A0A6H5KTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW3_9PHAE) HSP 1 Score: 279 bits (713), Expect = 6.140e-78 Identity = 230/613 (37.52%), Postives = 291/613 (47.47%), Query Frame = 1
Query: 82 VDMFQRVAEQGLQLCLTLAQGVDKVCVYMSVSPESWPPGMIPGHAVVQVSGVSRRLSGNGKSVYLVKARAQGGAVKVLSLALPPPPAHLPVLGWSAKSTKPPPISSPSMNTSNNE-----CSFKQATATATTRQH----------------------------GATPYPHCTAPVLLFPRPRPVTEHTAFATASTSSSSDTFFEPDCMPNNAI--SKRLKEVSARHSATCAGGSAGSTAAAAAAVAETFQXXXXXXXXXXXXXXXXXXXXXVKVAEMQCDARGVILASRDGSSVFIDTHP--------PYDGHLSDGIGRARASRNTVVAAEIVLPP----------RVLDGFGSSCSALSTVHSAGGNGVVAARGSPGGFE-VPRASSSH--------LAGCHSHSHVPLVPP--ITPSPVVNPNPG-----TSTLASLCKRGVLVRATQRFGSLTVVGVRFVKVSVWCKNCGPIKAKNLESGRCWARCHTPTCWDMRWEGSASVDDGTAQALLLLDGDDVRRLLKLSSDHRAQIESAALQFGPVVLSERASRHI------FVKSNPPGPLLSARDILEAAVKRAT-GTRASMIAANCVQVVKKGGTHPGVG 1692
VDMF+ ++E+ +QLCLTL DK+ VY+ VSPE+WP GM+PG VQV GV RRLSGNGKSVYL ARA GG V+VLSLALPPPP +LP LGWSA PP + S T S ATT G TP +AP+LLFPRPR T SS F D ++ I S+R++ GS+G + + + RGVI A+R G V +DTHP P D DG G AS A P RV DG S +++ G G + +P+ASS LAG S V VPP ++ P PG +STL ++ KRG+LVRAT F L+VVGVRF K + WCKNCGP++ K+L GRCW RC + W++RWEGSA++DDGTAQ L+LLDG+DV +LLKLS+ R IE AA + GPV S ++ H V + PP L AR L AA RA+ +RA ++A+CVQ +GG G G
Sbjct: 2046 VDMFEVLSEERVQLCLTLEHAADKISVYLGVSPEAWPVGMVPGFCTVQVEGVCRRLSGNGKSVYLAVARAGGGTVRVLSLALPPPPENLPALGWSAP-PHPPSVRGVSSTTRLGHEPGYLASMPVPACQATTATXXXXXXXXXXXXXXXFMNSSDDSVRSDRVGHTP---SSAPLLLFPRPR---------TRPVSS-----FARDDADHSGINTSQRIR------------GSSGGWGCSGHESVDPV---------------------------VMASGRGVIRATRGGRVVLLDTHPADAPPSPPPNDTISCDG-GDNGASVADAAAGSWACPEGNGGAAWKRARVGDGSVPPFPLSSRENTSAGRRAATVPVRDLGMDLIPKASSKEVSTWAELTLAGQVSEP-VLRVPPRSVSQQPAAMEAPGATSSSSSTLGAMFKRGILVRATTNFSCLSVVGVRFAKAATWCKNCGPVREKDLSMGRCWGRCDVSSNWEVRWEGSANIDDGTAQGLVLLDGEDVVKLLKLSTIARDDIEEAARRHGPVSFSGQSGGHSNSALASAVGAAPPTALAQARAALAAAAGRASCSSRAGHVSASCVQAFPRGGGSRGGG 2599
BLAST of mRNA_H-paniculata_contig1167.1071.1 vs. uniprot
Match: D7G4W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W4_ECTSI) HSP 1 Score: 162 bits (409), Expect = 5.030e-42 Identity = 88/178 (49.44%), Postives = 115/178 (64.61%), Query Frame = 1
Query: 1180 TLASLCKRGVLVRATQRFGSLTVVGVRFVKVSVWCKNCGPIKAKNLESGRCWARCHTPTCWDMRWEGSASVDDGTAQALLLLDGDDVRRLLKLSSDHRAQIESAALQFGPVVLSERASRHI------FVKSNPPGPLLSARDILEAAVKRAT-GTRASMIAANCVQVVKKGGTHPGVG 1692
TL ++ K G+LVRAT F L+VV VRF K + WCKNCGP++ K+L GRCW RC + W++RWEGSA++DDGTAQAL+LLDG+DV +LLK+S+ R IE AA + GPV S ++ H V PP L AR L AA RA+ +RA ++A+CVQ +GG G G
Sbjct: 55 TLGTMFKHGILVRATTNFSCLSVVCVRFAKAATWCKNCGPVREKDLSFGRCWGRCDVSSNWEVRWEGSANIDDGTAQALVLLDGEDVVKLLKISTIARNGIEEAARRHGPVSFSGQSGGHSNSALASAVGPAPPPALAQARAALAAAAGRASCSSRAGHVSASCVQTFPRGGGSRGGG 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1167.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1167.1071.1 >prot_H-paniculata_contig1167.1071.1 ID=prot_H-paniculata_contig1167.1071.1|Name=mRNA_H-paniculata_contig1167.1071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=568bp VLGRGGKTSPRLGEGSRTSTSQQKQHLVDMFQRVAEQGLQLCLTLAQGVDback to top mRNA from alignment at H-paniculata_contig1167:3331..24748+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1167.1071.1 ID=mRNA_H-paniculata_contig1167.1071.1|Name=mRNA_H-paniculata_contig1167.1071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=21418bp|location=Sequence derived from alignment at H-paniculata_contig1167:3331..24748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1167:3331..24748+ >mRNA_H-paniculata_contig1167.1071.1 ID=mRNA_H-paniculata_contig1167.1071.1|Name=mRNA_H-paniculata_contig1167.1071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3408bp|location=Sequence derived from alignment at H-paniculata_contig1167:3331..24748+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |