mRNA_H-paniculata_contig11667.1069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11667.1069.1
Unique NamemRNA_H-paniculata_contig11667.1069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11667.1069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11667contigH-paniculata_contig11667:6045..6596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11667.1069.1prot_H-paniculata_contig11667.1069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11667 6264..6587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.2587116-UTR-H-paniculata_contig11667:6044..62631622928875.2587116-UTR-H-paniculata_contig11667:6044..6263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11667 6045..6263 +
1691480653.0291407-UTR-H-paniculata_contig11667:6044..62631691480653.0291407-UTR-H-paniculata_contig11667:6044..6263Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11667 6045..6263 +
1622928875.2983418-UTR-H-paniculata_contig11667:6587..65961622928875.2983418-UTR-H-paniculata_contig11667:6587..6596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11667 6588..6596 +
1691480653.0489569-UTR-H-paniculata_contig11667:6587..65961691480653.0489569-UTR-H-paniculata_contig11667:6587..6596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11667 6588..6596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928875.2829642-CDS-H-paniculata_contig11667:6263..65871622928875.2829642-CDS-H-paniculata_contig11667:6263..6587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11667 6264..6587 +
1691480653.0393674-CDS-H-paniculata_contig11667:6263..65871691480653.0393674-CDS-H-paniculata_contig11667:6263..6587Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11667 6264..6587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11667.1069.1

>prot_H-paniculata_contig11667.1069.1 ID=prot_H-paniculata_contig11667.1069.1|Name=mRNA_H-paniculata_contig11667.1069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MNVEFIRAPKEEELVDIVSDFSKSNGDGTVTGELVPAQATGPTTMEAETR
QTAKVPTLEAVGLNVATSSRFPKVLASFQKRTMTDTMLFLRPDSLSIRFP
ITARKHL*
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mRNA from alignment at H-paniculata_contig11667:6045..6596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11667.1069.1 ID=mRNA_H-paniculata_contig11667.1069.1|Name=mRNA_H-paniculata_contig11667.1069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=552bp|location=Sequence derived from alignment at H-paniculata_contig11667:6045..6596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGTAGCACCTCCACCTGCGATCGTCGGGGTTAACGCCCAAGCCGTG
GTGGTGACAATACCCGATAACATTAATACGAAATTGACTTTTCCTATAGA
CTTTAGTGCCTTCGTCGAGATGCCAGAGCCATGCCCTGAAGATATGCCTC
TAGCACTGAGGTTGGGAAGCTGGGAGAATCATCCGCTCGTGATGGATTTT
TTCCGCGGAAACATGTGCAATGAACGTAGAGTTTATCAGAGCTCCTAAGG
AGGAAGAGCTGGTCGATATTGTTTCGGACTTCTCGAAGTCTAACGGAGAC
GGCACGGTGACTGGAGAGCTGGTGCCGGCACAGGCTACAGGACCAACAAC
AATGGAGGCGGAAACTCGACAGACAGCCAAGGTACCTACACTTGAGGCCG
TCGGTTTAAACGTTGCAACATCTTCCCGTTTCCCGAAAGTTCTTGCTTCT
TTCCAAAAGCGCACAATGACGGACACAATGCTTTTTCTCCGACCAGATTC
CCTTTCGATTCGATTTCCGATCACAGCTCGGAAACATTTGTAAAATCGAC
CA
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Coding sequence (CDS) from alignment at H-paniculata_contig11667:6045..6596+

>mRNA_H-paniculata_contig11667.1069.1 ID=mRNA_H-paniculata_contig11667.1069.1|Name=mRNA_H-paniculata_contig11667.1069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig11667:6045..6596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTAGAGTTTATCAGAGCTCCTAAGGAGGAAGAGCTGGTCGATAT
TGTTTCGGACTTCTCGAAGTCTAACGGAGACGGCACGGTGACTGGAGAGC
TGGTGCCGGCACAGGCTACAGGACCAACAACAATGGAGGCGGAAACTCGA
CAGACAGCCAAGGTACCTACACTTGAGGCCGTCGGTTTAAACGTTGCAAC
ATCTTCCCGTTTCCCGAAAGTTCTTGCTTCTTTCCAAAAGCGCACAATGA
CGGACACAATGCTTTTTCTCCGACCAGATTCCCTTTCGATTCGATTTCCG
ATCACAGCTCGGAAACATTTGTAAATGAACGTAGAGTTTATCAGAGCTCC
TAAGGAGGAAGAGCTGGTCGATATTGTTTCGGACTTCTCGAAGTCTAACG
GAGACGGCACGGTGACTGGAGAGCTGGTGCCGGCACAGGCTACAGGACCA
ACAACAATGGAGGCGGAAACTCGACAGACAGCCAAGGTACCTACACTTGA
GGCCGTCGGTTTAAACGTTGCAACATCTTCCCGTTTCCCGAAAGTTCTTG
CTTCTTTCCAAAAGCGCACAATGACGGACACAATGCTTTTTCTCCGACCA
GATTCCCTTTCGATTCGATTTCCGATCACAGCTCGGAAACATTTGTAA
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