mRNA_H-paniculata_contig1165.1064.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1165.1064.1
Unique NamemRNA_H-paniculata_contig1165.1064.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1165.1064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1165contigH-paniculata_contig1165:9332..9927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size596
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928874.4880402-CDS-H-paniculata_contig1165:9331..96671622928874.4880402-CDS-H-paniculata_contig1165:9331..9667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1165 9332..9667 +
1691480652.7135155-CDS-H-paniculata_contig1165:9331..96671691480652.7135155-CDS-H-paniculata_contig1165:9331..9667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1165 9332..9667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928874.5035512-UTR-H-paniculata_contig1165:9667..99271622928874.5035512-UTR-H-paniculata_contig1165:9667..9927Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1165 9668..9927 +
1691480652.7240875-UTR-H-paniculata_contig1165:9667..99271691480652.7240875-UTR-H-paniculata_contig1165:9667..9927Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1165 9668..9927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1165.1064.1prot_H-paniculata_contig1165.1064.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1165 9332..9667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1165.1064.1

>prot_H-paniculata_contig1165.1064.1 ID=prot_H-paniculata_contig1165.1064.1|Name=mRNA_H-paniculata_contig1165.1064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
PRLTRLLFNSFVLPNQLPVWRFVYSNVQLQSAQFKYTGYDCALFNGTRCD
RGSCSLISGGRSFTFHRLFLCVLLPALAWCCAQQPISSPGFGRYRCMAMT
SAYRDIRSADT*
back to top

mRNA from alignment at H-paniculata_contig1165:9332..9927+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1165.1064.1 ID=mRNA_H-paniculata_contig1165.1064.1|Name=mRNA_H-paniculata_contig1165.1064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=596bp|location=Sequence derived from alignment at H-paniculata_contig1165:9332..9927+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCGGTTAACACGTTTACTTTTTAACTCTTTTGTTTTGCCAAACCAGCT
ACCGGTTTGGCGATTTGTTTACTCTAATGTCCAACTCCAATCTGCCCAAT
TCAAATACACGGGGTATGATTGTGCGCTTTTCAATGGTACACGGTGTGAT
CGCGGGTCTTGTTCACTTATTTCTGGGGGCAGATCATTCACATTTCATCG
ACTGTTTCTGTGTGTTCTGCTCCCTGCGCTTGCCTGGTGCTGCGCGCAAC
AGCCGATATCTTCGCCGGGATTCGGTCGATATCGATGCATGGCGATGACA
TCGGCATATCGCGATATACGATCTGCTGATACATAACTTGTGTATTATAT
ATCGAATACTTCTACCCATACGCAACCTACAAACTACCAGATGTGAAAAA
ATACAAACTGTTCTGGCCGACGCTCACCGCTAGATCCGATATATCGAGAT
GTCGTGAGCCCTTGAAACAACTTACACAAAAAGAATTCGCTGACAGGGCG
TTGGCGGCCGGGAGCACGGATAAGTAACTCACCCTCTCGTTCACCCGTCT
GCCGCTCCTCTCGGTACGCGCGGGGCGTGGGCGGCGACGAGTAGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1165:9332..9927+

>mRNA_H-paniculata_contig1165.1064.1 ID=mRNA_H-paniculata_contig1165.1064.1|Name=mRNA_H-paniculata_contig1165.1064.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig1165:9332..9927+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCGGTTAACACGTTTACTTTTTAACTCTTTTGTTTTGCCAAACCAGCT
ACCGGTTTGGCGATTTGTTTACTCTAATGTCCAACTCCAATCTGCCCAAT
TCAAATACACGGGGTATGATTGTGCGCTTTTCAATGGTACACGGTGTGAT
CGCGGGTCTTGTTCACTTATTTCTGGGGGCAGATCATTCACATTTCATCG
ACTGTTTCTGTGTGTTCTGCTCCCTGCGCTTGCCTGGTGCTGCGCGCAAC
AGCCGATATCTTCGCCGGGATTCGGTCGATATCGATGCATGGCGATGACA
TCGGCATATCGCGATATACGATCTGCTGATACATAACCCCGGTTAACACG
TTTACTTTTTAACTCTTTTGTTTTGCCAAACCAGCTACCGGTTTGGCGAT
TTGTTTACTCTAATGTCCAACTCCAATCTGCCCAATTCAAATACACGGGG
TATGATTGTGCGCTTTTCAATGGTACACGGTGTGATCGCGGGTCTTGTTC
ACTTATTTCTGGGGGCAGATCATTCACATTTCATCGACTGTTTCTGTGTG
TTCTGCTCCCTGCGCTTGCCTGGTGCTGCGCGCAACAGCCGATATCTTCG
CCGGGATTCGGTCGATATCGATGCATGGCGATGACATCGGCATATCGCGA
TATACGATCTGCTGATACATAA
back to top