mRNA_H-paniculata_contig1165.1063.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1165.1063.1 vs. uniprot
Match: D8LEL8_ECTSI (ATG11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL8_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.880e-36 Identity = 110/297 (37.04%), Postives = 144/297 (48.48%), Query Frame = 1
Query: 1885 SMLDMSSRRMKVLEDR-AVAAEEQGEFWQGRARVAEDNNNRLEKVVTEQATKIAELLQEIATVSDAQVVPTPEDTAPRPPVPEDAAEEEARAMDELRRWGADMGGEPTIEDESKSSSTSTIIPGRMSPAAAQSRHDGADDAKDGGAVTTGIGVVGLEDSRQSITSGGGDGAPGGGVEGSVVKGLSGDALGTAGVLEGIGEIAFTSFSVGKVAMFFPTPDGSFLAFNVGCPAHLLSKESQALIGRDEHFRPYYVLGRIIEIQDMVCCDDNRYNVTTGQTIKVVSVESISPELRAVGLL 2772
S+ + + +LE R A AAEEQGEFWQ RA AE ++L+KVV +Q +IAELL+ A++ D + P+ +A + + G+ + G A G G+ G L IG IAFT FSVG+VAMFFPTP+G+FLAFNVGCP H LSKESQ L+GRDEHFR YYVLGRIIEI+D C ++N Y++ GQ+I VVSVESI+P+L G++
Sbjct: 354 SLAGFAGYKSALLEARRAAAAEEQGEFWQRRASSAEKAKDQLQKVVAQQKAQIAELLERCASLEDEKAAPSA-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSSAGRGQRRGSGRGRIGTAEEMGEARAASXXXXXXXXX-------------XXXXXXKGEGAGVGEALACIGGIAFTRFSVGQVAMFFPTPEGNFLAFNVGCPRHFLSKESQDLVGRDEHFRSYYVLGRIIEIRDQTCEEENPYSLPVGQSIMVVSVESITPDLHRAGVV 620
BLAST of mRNA_H-paniculata_contig1165.1063.1 vs. uniprot
Match: A0A7R9UFA6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFA6_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.790e-13 Identity = 41/96 (42.71%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 2482 IAFTSFSVGKVAMFFPTPDGSFLAFNVGCPAHLLSKESQALIGRDEHFRPYYVLGRIIEIQDMVCC-----DDNRYNVTTGQTIKVVSVESISPEL 2754
I+FTSF++ + +F TP +LAFNVG P H L+ E L+G+D+HF PYY+LGRI +I+ + N Y++ G VV +ESI+ EL
Sbjct: 203 ISFTSFTISDIGLFLVTPGNYYLAFNVGAPRHFLAPECAELVGKDKHFTPYYILGRITDIERRTAGPPEEPESNPYHLPEGVEFCVVYLESIAEEL 298
BLAST of mRNA_H-paniculata_contig1165.1063.1 vs. uniprot
Match: W7TGV0_9STRA (ATG11 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGV0_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.610e-12 Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query: 2482 IAFTSFSVGKVAMFFPTPDGSFLAFNVGCPAHLLSKESQALIGRDEHFRPYYVLGRIIEI 2661
I F F++G VA+FFPTP G +LAFNVGCP + LS++++A IGRD HFR YYVLGRI +
Sbjct: 409 IHFQRFALGHVALFFPTPAGDYLAFNVGCPHYYLSEDAKAWIGRDRHFRKYYVLGRITRL 468
BLAST of mRNA_H-paniculata_contig1165.1063.1 vs. uniprot
Match: A0A6H5LF98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF98_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.180e-8 Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 2590 ESQALIG--RDEHFRPYYVLGRIIEIQDMVCCDDNRYNVTTGQTIKVVSVESISPELRAVGLL 2772
E+ A IG DEHFR YYVLGRIIEI+D C ++N Y++ GQ+I V+SVESI+P+L G++
Sbjct: 699 EALACIGGIADEHFRSYYVLGRIIEIRDQTCEEENPYSLPVGQSIMVMSVESITPDLHRAGVI 761 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1165.1063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1165.1063.1 >prot_H-paniculata_contig1165.1063.1 ID=prot_H-paniculata_contig1165.1063.1|Name=mRNA_H-paniculata_contig1165.1063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=861bp MENGGMSGISLPPLPSFGVSEAGSQEDGSAGEEEGEELANTETVPGVNGWback to top mRNA from alignment at H-paniculata_contig1165:2..16428- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1165.1063.1 ID=mRNA_H-paniculata_contig1165.1063.1|Name=mRNA_H-paniculata_contig1165.1063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16427bp|location=Sequence derived from alignment at H-paniculata_contig1165:2..16428- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1165:2..16428- >mRNA_H-paniculata_contig1165.1063.1 ID=mRNA_H-paniculata_contig1165.1063.1|Name=mRNA_H-paniculata_contig1165.1063.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5166bp|location=Sequence derived from alignment at H-paniculata_contig1165:2..16428- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |