mRNA_H-paniculata_contig11644.1060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11644.1060.1
Unique NamemRNA_H-paniculata_contig11644.1060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11644.1060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11644contigH-paniculata_contig11644:3658..4531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size874
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11644.1060.1prot_H-paniculata_contig11644.1060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11644 3962..4474 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928873.9691055-UTR-H-paniculata_contig11644:3657..39611622928873.9691055-UTR-H-paniculata_contig11644:3657..3961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11644 3658..3961 +
1691480652.505916-UTR-H-paniculata_contig11644:3657..39611691480652.505916-UTR-H-paniculata_contig11644:3657..3961Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11644 3658..3961 +
1622928874.004578-UTR-H-paniculata_contig11644:4474..45311622928874.004578-UTR-H-paniculata_contig11644:4474..4531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11644 4475..4531 +
1691480652.5256975-UTR-H-paniculata_contig11644:4474..45311691480652.5256975-UTR-H-paniculata_contig11644:4474..4531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11644 4475..4531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928873.990711-CDS-H-paniculata_contig11644:3961..44741622928873.990711-CDS-H-paniculata_contig11644:3961..4474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11644 3962..4474 +
1691480652.516174-CDS-H-paniculata_contig11644:3961..44741691480652.516174-CDS-H-paniculata_contig11644:3961..4474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11644 3962..4474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11644.1060.1

>prot_H-paniculata_contig11644.1060.1 ID=prot_H-paniculata_contig11644.1060.1|Name=mRNA_H-paniculata_contig11644.1060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MPPSSTKDTGLYTASLLKSIPRALANILELADAIGKHNASSPTWVYGWLT
PLHKAMRRAFKKNASFPSDPISLTHTIDSFFKAVERVGADGLGCAILFAD
LGRRVTAHFDRSDQASAIKRISSYTVATGVPFVNYLSGFKSLISGLSGTG
RKNAPTDGMIQSYVRNNITQ*
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mRNA from alignment at H-paniculata_contig11644:3658..4531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11644.1060.1 ID=mRNA_H-paniculata_contig11644.1060.1|Name=mRNA_H-paniculata_contig11644.1060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=874bp|location=Sequence derived from alignment at H-paniculata_contig11644:3658..4531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCACCACAGATGGAATTCGAAGGTGCACACAGCCCATTCCTAGTTTA
GAAGTTGCAGCTGCACGTGTTCTCGGCCTTCCGAGGATGATTGTAAGATA
GACAGACCTCTTTCCTCCTTGTCCGCTCATGCCCGTGCTGCCGCTACAGA
AGTAGAAGACGCGGAAATACGTAAGGCCACCGAGAAATTACAAGTACAGA
CCAACGCCGATACGTTGAAGGCTGCGGGCGACGTCGCACGTGTAACCGCC
ACACAGACAGAGTACGTCAAAATTGATACAAAACATATTTAGTTCGTGGA
TTCTATGCCCCCGTCTAGCACTAAAGATACGGGCTTGTATACAGCCAGTT
TACTAAAATCAATCCCGCGTGCTTTGGCAAACATTTTGGAACTCGCCGAC
GCTATCGGGAAGCATAACGCTTCTTCCCCCACTTGGGTGTATGGTTGGCT
TACTCCCCTGCACAAAGCCATGCGTCGAGCATTCAAGAAAAACGCCTCTT
TCCCCTCCGATCCCATCTCTCTCACACATACGATTGATAGCTTCTTCAAA
GCGGTGGAACGAGTTGGCGCCGACGGCCTCGGATGCGCCATTTTATTCGC
AGATCTGGGTCGGCGTGTGACGGCACACTTTGACCGTTCCGACCAAGCTA
GCGCTATTAAGCGTATAAGTTCCTACACAGTAGCTACAGGTGTGCCTTTT
GTGAACTACTTGAGTGGCTTTAAGAGCCTGATTTCGGGACTTTCTGGCAC
GGGTCGAAAGAATGCTCCCACGGATGGTATGATACAGAGCTATGTGCGTA
ATAACATCACTCAGTAATTTCCTGCCTTGATGACATCGTTGTACCCGGGT
GACTTGGCTTCGCGTGATATACCG
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Coding sequence (CDS) from alignment at H-paniculata_contig11644:3658..4531+

>mRNA_H-paniculata_contig11644.1060.1 ID=mRNA_H-paniculata_contig11644.1060.1|Name=mRNA_H-paniculata_contig11644.1060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig11644:3658..4531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCCGTCTAGCACTAAAGATACGGGCTTGTATACAGCCAGTTTACT
AAAATCAATCCCGCGTGCTTTGGCAAACATTTTGGAACTCGCCGACGCTA
TCGGGAAGCATAACGCTTCTTCCCCCACTTGGGTGTATGGTTGGCTTACT
CCCCTGCACAAAGCCATGCGTCGAGCATTCAAGAAAAACGCCTCTTTCCC
CTCCGATCCCATCTCTCTCACACATACGATTGATAGCTTCTTCAAAGCGG
TGGAACGAGTTGGCGCCGACGGCCTCGGATGCGCCATTTTATTCGCAGAT
CTGGGTCGGCGTGTGACGGCACACTTTGACCGTTCCGACCAAGCTAGCGC
TATTAAGCGTATAAGTTCCTACACAGTAGCTACAGGTGTGCCTTTTGTGA
ACTACTTGAGTGGCTTTAAGAGCCTGATTTCGGGACTTTCTGGCACGGGT
CGAAAGAATGCTCCCACGGATGGTATGATACAGAGCTATGTGCGTAATAA
CATCACTCAGTAAATGCCCCCGTCTAGCACTAAAGATACGGGCTTGTATA
CAGCCAGTTTACTAAAATCAATCCCGCGTGCTTTGGCAAACATTTTGGAA
CTCGCCGACGCTATCGGGAAGCATAACGCTTCTTCCCCCACTTGGGTGTA
TGGTTGGCTTACTCCCCTGCACAAAGCCATGCGTCGAGCATTCAAGAAAA
ACGCCTCTTTCCCCTCCGATCCCATCTCTCTCACACATACGATTGATAGC
TTCTTCAAAGCGGTGGAACGAGTTGGCGCCGACGGCCTCGGATGCGCCAT
TTTATTCGCAGATCTGGGTCGGCGTGTGACGGCACACTTTGACCGTTCCG
ACCAAGCTAGCGCTATTAAGCGTATAAGTTCCTACACAGTAGCTACAGGT
GTGCCTTTTGTGAACTACTTGAGTGGCTTTAAGAGCCTGATTTCGGGACT
TTCTGGCACGGGTCGAAAGAATGCTCCCACGGATGGTATGATACAGAGCT
ATGTGCGTAATAACATCACTCAGTAA
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