mRNA_H-paniculata_contig1164.1058.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1164.1058.1
Unique NamemRNA_H-paniculata_contig1164.1058.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1164.1058.1 vs. uniprot
Match: D8LE14_ECTSI (TPR Domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE14_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 6.980e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  641 MSDYHILAHSSQRSGRHWMEGLAYYSTGVTMDSMGQYGKALESYRKFLAVCK 796
            MSDYH+LA SSQRSGRH MEGLAYYS GVTMDSMGQY KALE+Y+KFLAVCK
Sbjct:  193 MSDYHMLAFSSQRSGRHEMEGLAYYSAGVTMDSMGQYPKALENYKKFLAVCK 244
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BLAST of mRNA_H-paniculata_contig1164.1058.1 vs. uniprot
Match: A0A6H5LCZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCZ2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.150e-17
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  641 MSDYHILAHSSQRSGRHWMEGLAYYSTGVTMDSMGQYGKALESYRKFLAVCK 796
            MSDY++LA SSQRSGRH MEGLAYYS GVTMDSMGQY KA+E+Y+KFLAVCK
Sbjct:  190 MSDYNMLAFSSQRSGRHEMEGLAYYSAGVTMDSMGQYPKAIENYKKFLAVCK 241
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BLAST of mRNA_H-paniculata_contig1164.1058.1 vs. uniprot
Match: A0A836C9X6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9X6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.340e-12
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:  641 MSDYHILAHSSQRSGRHWMEGLAYYSTGVTMDSMGQYGKALESYRKFLAVCK 796
            +SDY +LA SSQR+GR  MEGLAY+  GV  D+MGQYGKALE+Y+K+L VC+
Sbjct:   94 ISDYTVLASSSQRAGRPQMEGLAYFCIGVLYDNMGQYGKALEAYKKYLGVCR 145
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BLAST of mRNA_H-paniculata_contig1164.1058.1 vs. uniprot
Match: A0A7S2C237_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C237_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 5.790e-9
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:  641 MSDYHILAHSSQRSGRHWMEGLAYYSTGVTMDSMGQYGKALESYRKFLAVCK*GPEPL 814
            +SDY +LA SSQR+G+  MEG AY +  +T+D+M QY KA+ESY KFL+VC+   +P+
Sbjct:  157 VSDYSMLAFSSQRAGKTQMEGQAYLAIAITLDNMQQYTKAIESYGKFLSVCEKMGDPV 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1164.1058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LE14_ECTSI6.980e-1986.54TPR Domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LCZ2_9PHAE1.150e-1782.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9X6_9STRA2.340e-1265.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C237_9STRA5.790e-953.45Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1164contigH-paniculata_contig1164:26128..26959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog2880.D8LE14
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs29K8A@1,2RTH8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size279
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1164.1058.1prot_H-paniculata_contig1164.1058.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1164 26161..26319 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928873.4830346-UTR-H-paniculata_contig1164:26127..261601622928873.4830346-UTR-H-paniculata_contig1164:26127..26160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1164 26128..26160 -
1691480652.426537-UTR-H-paniculata_contig1164:26127..261601691480652.426537-UTR-H-paniculata_contig1164:26127..26160Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1164 26128..26160 -
1622928873.7395232-UTR-H-paniculata_contig1164:26872..269591622928873.7395232-UTR-H-paniculata_contig1164:26872..26959Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1164 26873..26959 -
1691480652.449438-UTR-H-paniculata_contig1164:26872..269591691480652.449438-UTR-H-paniculata_contig1164:26872..26959Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1164 26873..26959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928873.662584-CDS-H-paniculata_contig1164:26160..263191622928873.662584-CDS-H-paniculata_contig1164:26160..26319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1164 26161..26319 -
1691480652.4398263-CDS-H-paniculata_contig1164:26160..263191691480652.4398263-CDS-H-paniculata_contig1164:26160..26319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1164 26161..26319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1164.1058.1

>prot_H-paniculata_contig1164.1058.1 ID=prot_H-paniculata_contig1164.1058.1|Name=mRNA_H-paniculata_contig1164.1058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MSDYHILAHSSQRSGRHWMEGLAYYSTGVTMDSMGQYGKALESYRKFLAV
CK*
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mRNA from alignment at H-paniculata_contig1164:26128..26959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1164.1058.1 ID=mRNA_H-paniculata_contig1164.1058.1|Name=mRNA_H-paniculata_contig1164.1058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=832bp|location=Sequence derived from alignment at H-paniculata_contig1164:26128..26959- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTCAGCATTTTCGCCAGCAGCTTTCACGATGCGCAAGTACGAGCTCC
CAATATCTCACGGCAGTGCGGCAAATGACTGCGCAGGGTGAGAAAGTACT
GTTCTCCGTATGTAAAGGTATATTGTACATCATAGCGTTCAGTGCATGCC
CTGTATCTACTCCAAGTATGGTACTATATCGATACGGTGTTCGTGAACAG
TCGTTTCAATTTTGACGTTCGCGGGGTAATGAGTAGGGCTTTTTCGTTCT
CACCCGATAGTGTACACACATCGACGCAAGACTCGCACTGCTGAGCCTTT
TTGACTGTTCAAAAGGGAGTTTGGGGGGGGAGCTTGAGTTGTCGTTACGC
TCATACGTTGTTGGTGACCTTAATCGCTGGGGTCGCTCACTGTGGGACAG
GGCTACTACTACGTCTTCTCTCATGAATAGCACACGTCAACGACAAGAGC
CGTCCGTGCGGACACACTCAGAGAACCAGGCATCCTACCGAACAGCGGTG
AGAAACATGTTGTATGCTACCGAGCGATTCTCTCCTCAGCTCTCGCACTT
CTTTCTGAAACCATAGGAAGACTTTTAGACAGTCTTGATACATGCGCATC
TGCTGTGCTCTTTTCTTTCGCTTGCCTCCTGTTATTCCAGATGAGCGACT
ATCACATCCTGGCCCACTCTAGCCAAAGATCAGGAAGGCACTGGATGGAA
GGGCTGGCCTACTACTCTACCGGAGTGACCATGGACAGCATGGGGCAGTA
TGGAAAAGCGTTAGAAAGCTACAGGAAGTTCCTGGCCGTCTGCAAGTGAG
GACCGGAACCTCTTGGGCTGTGAATAAGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1164:26128..26959-

>mRNA_H-paniculata_contig1164.1058.1 ID=mRNA_H-paniculata_contig1164.1058.1|Name=mRNA_H-paniculata_contig1164.1058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig1164:26128..26959- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGACTATCACATCCTGGCCCACTCTAGCCAAAGATCAGGAAGGCA
CTGGATGGAAGGGCTGGCCTACTACTCTACCGGAGTGACCATGGACAGCA
TGGGGCAGTATGGAAAAGCGTTAGAAAGCTACAGGAAGTTCCTGGCCGTC
TGCAAGTGAATGAGCGACTATCACATCCTGGCCCACTCTAGCCAAAGATC
AGGAAGGCACTGGATGGAAGGGCTGGCCTACTACTCTACCGGAGTGACCA
TGGACAGCATGGGGCAGTATGGAAAAGCGTTAGAAAGCTACAGGAAGTTC
CTGGCCGTCTGCAAGTGA
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