mRNA_H-paniculata_contig11624.1052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11624.1052.1
Unique NamemRNA_H-paniculata_contig11624.1052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: D7G5L2_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L2_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.620e-96
Identity = 157/205 (76.59%), Postives = 181/205 (88.29%), Query Frame = 3 
Query:   15 EDGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHS--NGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSLS 623
            +DGIE+TQLLTHKADVL+VNE+RL +L+G+EV+ +A+++ NR + LRQLDDSC APAT+R K+GAQV+LVKNLATGR LANGSRGVV+R+  S  +G RLPVVRF SGLEEV+R EEF LYVGG  VASRRQLP+ALAWALSVHKSQGMSLDR SVCLSRAFEYGQAYVALSRVRSLEGL +VG ID S IRAHPRV+ FYR+LS
Sbjct:  218 DDGIEKTQLLTHKADVLKVNEERLGRLDGAEVVSKAENRGNRPDILRQLDDSCSAPATLRLKVGAQVMLVKNLATGRGLANGSRGVVVRFAKSTSSGARLPVVRFASGLEEVIRPEEFHLYVGGQAVASRRQLPLALAWALSVHKSQGMSLDRASVCLSRAFEYGQAYVALSRVRSLEGLSVVGTIDPSKIRAHPRVVSFYRALS 422
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: UPI001CFE16C6 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Gracilinanus agilis TaxID=191870 RepID=UPI001CFE16C6)

HSP 1 Score: 176 bits (447), Expect = 1.360e-49
Identity = 100/201 (49.75%), Postives = 136/201 (67.66%), Query Frame = 3 
Query:   18 DGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSL 620
            DGI  T+L TH+ DV   NE+RLQQL G      A D     + +R LD  CP    ++ K+GAQV+LVKNLA  + L NG+RGVV+ +  ++G  LP V+F  G+ EV+R+E + ++  G  + SR+QLP+ LAWALS+HKSQGM+LD V + L+R FE GQAYVALSR RSL+GL ++ + D + +R  PRV+ FY SL
Sbjct:   20 DGILATRLCTHQDDVALTNERRLQQLPGQVHSYEAVDSD--PDMVRTLDSQCPVGHLLQLKLGAQVMLVKNLAVSQGLVNGARGVVVGF-EADGRGLPRVKFLCGVTEVVRTERWTVHGPGGQLLSRQQLPLRLAWALSIHKSQGMTLDCVEISLARVFESGQAYVALSRARSLQGLRVL-DFDPNVVRCDPRVLKFYASL 216
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: A0A2I4AHF5_9TELE (ATP-dependent DNA helicase n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4AHF5_9TELE)

HSP 1 Score: 171 bits (433), Expect = 2.600e-46
Identity = 101/202 (50.00%), Postives = 132/202 (65.35%), Query Frame = 3 
Query:   18 DGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRY-THSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSL 620
            DGI  T+L THK DV   NE +LQQL GS  +  AQD     E +R +D   P    ++ K+GAQV+L KNL  GR L NG+RGVV+ + T  +G  LP VRF  GL EV++ E +     G +  SR+QLP+ LAWA+S+HKSQGM+LD V + L+R FE GQAYVALSR RSLEGL ++ + +   +RA P V+ FY+ L
Sbjct:  100 DGILATRLCTHKDDVELTNENKLQQLPGSARVFEAQDSD--PELVRXIDAHSPVGRLIQLKVGAQVMLTKNLDVGRGLVNGARGVVLDFETGKHG--LPRVRFMCGLTEVLKPERWVFKSAGGIFLSRQQLPVKLAWAISIHKSQGMTLDCVEISLARVFESGQAYVALSRARSLEGLRVM-DFNPHVVRADPDVLLFYKKL 296
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: F7ET02_MONDO (ATP-dependent DNA helicase PIF1 n=7 Tax=Metatheria TaxID=9263 RepID=F7ET02_MONDO)

HSP 1 Score: 177 bits (449), Expect = 5.650e-46
Identity = 101/205 (49.27%), Postives = 136/205 (66.34%), Query Frame = 3 
Query:   18 DGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSLSAAA 632
            DGI  T+L TH+ DV   NE+RLQQL G      A D       +R LD  CP    ++ K+GAQV+LVKNLA  + L NG+RGVV+ +  ++G  LP V+F  G+ EV+R+E + ++  G  + SR+QLP+ LAWALS+HKSQGM+LD V + L+R FE GQAYVALSR RSL+GL ++ + D + +R  PRV+ FY SL   A
Sbjct:  415 DGILATRLCTHQDDVALTNERRLQQLPGQVHSYEAVDSD--PTMVRTLDSQCPVSHLLQLKLGAQVMLVKNLAVSQGLVNGARGVVVGF-EADGRGLPTVKFLCGVTEVVRTERWTVHGPGGQLLSRQQLPLRLAWALSIHKSQGMTLDCVEISLARVFESGQAYVALSRARSLQGLRVL-DFDPNVVRCDPRVLKFYASLRKQA 615
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: A0A8C5KW85_JACJA (ATP-dependent DNA helicase PIF1 n=1 Tax=Jaculus jaculus TaxID=51337 RepID=A0A8C5KW85_JACJA)

HSP 1 Score: 174 bits (441), Expect = 1.430e-45
Identity = 99/201 (49.25%), Postives = 131/201 (65.17%), Query Frame = 3 
Query:   18 DGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSL 620
            DGIE T+L TH+ DV   NE+RL++L G      A D  +  E  R LD  CP    ++ K+GAQV+LVKNLA  R L NG+RGVV+ +  + G  LP VRF  G+ EV+R++ + + V G    SR+QLP+ LAWA+S+HKSQGMSLD V + L R F  GQAYVALSR RSL+GL +V + D   +   PRV+ +Y +L
Sbjct:  297 DGIEATRLCTHQDDVALTNEKRLRELPGEVHSFEAMD--SHPELARTLDAQCPVSRHLQLKLGAQVMLVKNLAVSRGLVNGARGVVVGF-QAEGRGLPQVRFLCGVTEVIRTDRWTVQVTGGQFVSRQQLPLQLAWAISIHKSQGMSLDCVEISLGRVFASGQAYVALSRARSLQGLRVV-DFDPMVVYCDPRVLHYYATL 493
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: A0A0L0FVZ2_9EUKA (ATP-dependent DNA helicase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FVZ2_9EUKA)

HSP 1 Score: 173 bits (439), Expect = 2.200e-45
Identity = 98/206 (47.57%), Postives = 137/206 (66.50%), Query Frame = 3 
Query:   33 TQLLTHKADVLRVNEQRLQQLEGSEVLVRAQD----KANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSN---GMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSLSAA 629
            T+L TH A+V   NE+ L  L G EV   A D    + +R+    QLD  CPAP  +  K+GAQV++ +N+     L NG+RGVV+ +  +    G+RLP+VRF SG E+V+ SE +   V G  VA+R Q+P+ L+WA+SVHKSQGM++D V+V +S+ FE+GQAYVALSR R+LEGL + G   A+NIRA+P+ + FY+ L  A
Sbjct:  290 TELCTHVAEVEDKNEKFLTDLSGEEVAFTALDNYYTEGDRAALTSQLDHLCPAPTALVLKLGAQVMMCRNVDFKAGLVNGARGVVVGFNTTADRFGVRLPIVRFASGAEKVVHSETWAHKVFGREVAARTQVPLRLSWAISVHKSQGMTIDLVNVNISKVFEFGQAYVALSRARTLEGLKVTG-FTAANIRANPKALQFYKKLRQA 494
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: M3XN93_MUSPF (ATP-dependent DNA helicase PIF1 n=9 Tax=Mustelidae TaxID=9655 RepID=M3XN93_MUSPF)

HSP 1 Score: 176 bits (447), Expect = 2.230e-45
Identity = 100/201 (49.75%), Postives = 131/201 (65.17%), Query Frame = 3 
Query:   18 DGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSL 620
            DGI  T+L TH+ DV   NE+RLQ+L G     +A D     E  R LD  CP    ++ K+GAQV+LVKNLA  R L NG+RGVVI +  + G  LP VRF  G+ EV+R++ + +   G  + SR+QLP+ LAWA+S+HKSQGMSLD V + L R F  GQAYVALSR RSL+GL ++ + D   +R  PRV+ FY +L
Sbjct:  475 DGIVATRLCTHQDDVALTNERRLQELPGEMHTFKAMDSD--PEQARSLDAQCPVSQILQLKLGAQVMLVKNLAVSRGLVNGARGVVIGF-ETEGRGLPQVRFLCGVTEVIRADRWTVQATGGQLLSRQQLPLQLAWAISIHKSQGMSLDCVEISLGRVFASGQAYVALSRARSLQGLRVL-DFDPMVVRCDPRVLSFYAAL 671
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: A0A5A8CRH1_CAFRO (ATP-dependent DNA helicase n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRH1_CAFRO)

HSP 1 Score: 174 bits (440), Expect = 2.240e-45
Identity = 99/204 (48.53%), Postives = 130/204 (63.73%), Query Frame = 3 
Query:   24 IEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSLSAAAA 635
            I  T L TH+ADV  VNE+ L +L G EV++R  D A+     R L+ +CPAPA++R ++GAQV+LV+NL  G  L NG+RGVV+ +  S  +R P VRF SG   V+  E F +       A R+Q+P+ LA+A+SVHKSQG SLD VS+ L R FE GQAYVALSR RSL GL ++ +     +RA P  + FY  L   AA
Sbjct:  304 IRPTLLFTHRADVDAVNEKELARLRGDEVVLRGDDTAHSPGARRALESACPAPASLRLRVGAQVMLVRNLDVGAGLVNGARGVVLGF--SGTLRYPQVRFASGTVTVLGKETFSVQPAAGARAFRKQVPLRLAFAMSVHKSQGTSLDAVSMSLGRVFEAGQAYVALSRARSLAGLSLLDKFKPECVRACPVALKFYTQLRPRAA 505
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: A0A8J9S3Z5_9CHLO (ATP-dependent DNA helicase PIF1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S3Z5_9CHLO)

HSP 1 Score: 174 bits (442), Expect = 3.490e-45
Identity = 100/202 (49.50%), Postives = 131/202 (64.85%), Query Frame = 3 
Query:   18 DGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSLS 623
            DGI  T+L TH  DV  +N + L +L G  V   AQD  N       L  +C A   V  K GAQV+L +N++  R L NG+RGVV R+     +RLP+VRF SGLE  +  E++ +  G  V+A+R Q+P+A AWALSVHKSQGM+LDRV V L+RAFE G AYVALSR RSL+GL I G+I    ++A P+VI FY +++
Sbjct:  401 DGILPTKLYTHTDDVDTINSRHLAELNGEAVRFVAQDSGNPDA----LKSACNAKQVVELKAGAQVMLTRNISANRGLVNGARGVVERFVGKT-IRLPIVRFASGLEVTVGKEQWTIKSGNRVLATRTQIPLACAWALSVHKSQGMTLDRVEVNLARAFEAGMAYVALSRARSLQGLHISGDIHPHALQADPKVIAFYAAMA 597
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BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Match: A0A6I9ICW5_VICPA (ATP-dependent DNA helicase PIF1 n=2 Tax=Eutheria TaxID=9347 RepID=A0A6I9ICW5_VICPA)

HSP 1 Score: 173 bits (438), Expect = 3.970e-45
Identity = 99/201 (49.25%), Postives = 130/201 (64.68%), Query Frame = 3 
Query:   18 DGIEETQLLTHKADVLRVNEQRLQQLEGSEVLVRAQDKANRSEYLRQLDDSCPAPATVRTKIGAQVILVKNLATGRRLANGSRGVVIRYTHSNGMRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQGMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRVIDFYRSL 620
            DGI  T+L TH+ DV   NE+RLQ+L G      A D     E  R LD  CP    ++ K+GAQV+LVKNLA  R L NG+RGVV+ +  + G  LP V F  G+ EV+R++ + +   G  + SR+QLP+ LAWA+S+HKSQGMSLD V + LSR F  GQAYVALSR RSL+GL ++ + D   +R  PRV+ FY +L
Sbjct:  299 DGIVATRLCTHQDDVALTNEKRLQELPGEIHSFEAMDSD--PEQARTLDAQCPVSQLLQLKLGAQVMLVKNLAVSRGLVNGARGVVVGF-EAEGRGLPQVLFLCGVTEVIRADRWTVQATGGQLLSRQQLPLQLAWAISIHKSQGMSLDCVEISLSRVFASGQAYVALSRARSLQGLRVL-DFDPMVVRCDPRVLSFYATL 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11624.1052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5L2_ECTSI1.620e-9676.59ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
UPI001CFE16C61.360e-4949.75ATP-dependent DNA helicase PIF1-like n=1 Tax=Graci... [more]
A0A2I4AHF5_9TELE2.600e-4650.00ATP-dependent DNA helicase n=1 Tax=Austrofundulus ... [more]
F7ET02_MONDO5.650e-4649.27ATP-dependent DNA helicase PIF1 n=7 Tax=Metatheria... [more]
A0A8C5KW85_JACJA1.430e-4549.25ATP-dependent DNA helicase PIF1 n=1 Tax=Jaculus ja... [more]
A0A0L0FVZ2_9EUKA2.200e-4547.57ATP-dependent DNA helicase n=1 Tax=Sphaeroforma ar... [more]
M3XN93_MUSPF2.230e-4549.75ATP-dependent DNA helicase PIF1 n=9 Tax=Mustelidae... [more]
A0A5A8CRH1_CAFRO2.240e-4548.53ATP-dependent DNA helicase n=2 Tax=Cafeteria roenb... [more]
A0A8J9S3Z5_9CHLO3.490e-4549.50ATP-dependent DNA helicase PIF1 n=1 Tax=Coccomyxa ... [more]
A0A6I9ICW5_VICPA3.970e-4549.25ATP-dependent DNA helicase PIF1 n=2 Tax=Eutheria T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11624contigH-paniculata_contig11624:509..6491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.6
Seed ortholog evalue1e-43
Seed eggNOG ortholog2880.D7G5L2
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons5
Model size1256
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.7820008-UTR-H-paniculata_contig11624:508..5881622928872.7820008-UTR-H-paniculata_contig11624:508..588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 509..588 +
1691480652.0826302-UTR-H-paniculata_contig11624:508..5881691480652.0826302-UTR-H-paniculata_contig11624:508..588Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 509..588 +
1622928872.7942643-UTR-H-paniculata_contig11624:2216..23481622928872.7942643-UTR-H-paniculata_contig11624:2216..2348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 2217..2348 +
1691480652.1014974-UTR-H-paniculata_contig11624:2216..23481691480652.1014974-UTR-H-paniculata_contig11624:2216..2348Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 2217..2348 +
1622928872.8104105-UTR-H-paniculata_contig11624:3212..32991622928872.8104105-UTR-H-paniculata_contig11624:3212..3299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 3213..3299 +
1691480652.1189392-UTR-H-paniculata_contig11624:3212..32991691480652.1189392-UTR-H-paniculata_contig11624:3212..3299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 3213..3299 +
1622928872.8653512-UTR-H-paniculata_contig11624:5873..64911622928872.8653512-UTR-H-paniculata_contig11624:5873..6491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 5874..6491 +
1691480652.1675298-UTR-H-paniculata_contig11624:5873..64911691480652.1675298-UTR-H-paniculata_contig11624:5873..6491Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11624 5874..6491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.8252034-CDS-H-paniculata_contig11624:3299..33491622928872.8252034-CDS-H-paniculata_contig11624:3299..3349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11624 3300..3349 +
1691480652.131639-CDS-H-paniculata_contig11624:3299..33491691480652.131639-CDS-H-paniculata_contig11624:3299..3349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11624 3300..3349 +
1622928872.8377564-CDS-H-paniculata_contig11624:4349..44541622928872.8377564-CDS-H-paniculata_contig11624:4349..4454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11624 4350..4454 +
1691480652.1405091-CDS-H-paniculata_contig11624:4349..44541691480652.1405091-CDS-H-paniculata_contig11624:4349..4454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11624 4350..4454 +
1622928872.8544328-CDS-H-paniculata_contig11624:5689..58731622928872.8544328-CDS-H-paniculata_contig11624:5689..5873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11624 5690..5873 +
1691480652.1511486-CDS-H-paniculata_contig11624:5689..58731691480652.1511486-CDS-H-paniculata_contig11624:5689..5873Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11624 5690..5873 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11624.1052.1prot_H-paniculata_contig11624.1052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11624 3300..5873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11624.1052.1

>prot_H-paniculata_contig11624.1052.1 ID=prot_H-paniculata_contig11624.1052.1|Name=mRNA_H-paniculata_contig11624.1052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MRLPVVRFTSGLEEVMRSEEFPLYVGGVVVASRRQLPIALAWALSVHKSQ
GMSLDRVSVCLSRAFEYGQAYVALSRVRSLEGLVIVGEIDASNIRAHPRV
IDFYRSLSAAAA*
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mRNA from alignment at H-paniculata_contig11624:509..6491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11624.1052.1 ID=mRNA_H-paniculata_contig11624.1052.1|Name=mRNA_H-paniculata_contig11624.1052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5983bp|location=Sequence derived from alignment at H-paniculata_contig11624:509..6491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGTGGTTGCTGCGAGGACGGGATCGAGGAGACGCAGCTCTTGACGCAC
AAGGCGGATGTTCTTAGGGTGAACGAGCAGGTGAAAGGCCGGGGGCGGGA
AGGGGGTTGAGGGGAGGGCATGAAGCCAGGAGAGGAAGATTCGGGTTCTG
GTGTTAATTTTTGCGTCATAAGAAAGAAATAATGTTGAAAAAAATGTATG
GTTTAAAATTGTATTGATTTTTGTTTTTGGATGGATTTCCGATGGAGCAA
ACAAGACTAATTAACAGATATGTATGTATGTATATATATATATATACGAA
ACTAAGAACGCAAGAATTGCCCCCGTTATAAGGTCACCAAGATACCGTAA
CTAGGAAAAACGAACTGTTTCAAAAAAATTGAAGAACAGGAGCAATTTCC
AAAGGAATTTCATTGTAAGTGGTGAAGGGAGAGACGGAGAGGGATAACTT
CGCGGTTGGTTGTCCATTTTTACAAACTAATAACGAGACGAACAAAATAA
AAAAAAATAAAAATGCATCGGACGTTTTTTTACTCCTGAGCCTCCGTTCA
CTTGCACTCAATCGCGGTGCTACTTGTACAGTTTTTTGTTCAACCCCTTT
AGCACCGGACCTTGTACAGTATCTCCCTACACAATCCCTGCCTAGCGATG
GTGTCCTGCACGAAATTATTGAACGTGCAAAGAACGCCTCCACAAAAGGT
AAAAAAGAGGTCAAGGTCACGAGATGTGTATTTTGGTCATGTTCCTCACG
TTTGTTCTGGACTCCCTCCTCGTTTCCGCAGCGGTTTCCCCCTCAGGACT
GTCAGATTTCTTCATTGTTCTTGTTCAGGGGTTGGTGCCACGGGCGTTGA
ACTAGATGTTGTGTTTGGTTCGTGTCGGTACCACTAGCAACAAAGGGTCT
ATCAGTGGTTTGTGACCGCTGTGTATACCTTCTGGACTCTTGAAGACTTG
TTCTGTTTTTCACATGTGCAGTACAACAGCAACACAAAACCCTGGAAGCG
TCTGTCTGCCTGTATATTATCACCATTTTCTGTAAGGCGGTGACGATCGT
TTCTGCCTTCAATATTTTTTTTGCTTGATTTTCCCGAGGCGGATTTGCAG
AACAACCCAACCAACAGGGGGACAGAAGAAGTGAAGCGAAGCAGAGAGTA
AGCAAGAGGGGAAGCACGGATGTCCATTCCTCTGGAGGTTGCCTGGTACA
GGACAGTACAGTACAGTACAACACCTAATTTTACCTGCCAGCGTTCGCGA
CAAATCAGAATGGGCAAAGATGGAAACAGACGGCCTGAACAAGTCCTCTC
CGAGTTTTTTAGATGGCCTATTTTCTTGACGCCGACTTGCTAGAGTCTCC
TGACCTTGCGTCAACCAACATTCCGTGAGGCTGACTCAAAGGCAATCTGT
CGAGGCGACCCTCCCTTTTTCTACATGTCGAGTGTAAGTGTCAAAGCTGA
TTGACTTCCCTCGACGTACGAACCGGCTCCGCCCCCACCCATCCATTCCT
ACCCACTTGGACTCACCTACCCCCCCCCCACTTAGACTTGCCCATTCCTA
CCCACTTGGACTCCACTTGGACTCACCTAACCCTCCACTTGGACTCAACT
CTCCCCACACTTAGACTCACTTACCCCCCGCAGTTGGACCCACTCACGCA
CCTACTTGAACTCACCTACCGACTAACTCACCACTCTTTGCGCGAACAAA
CCCCTCAGCGATTACAGCAGCTGGAAGGGTCTGAGGTGTTGGTACGAGCA
CAAGACAAAGCCAACCGCTCCGAGTACCTGAGGCAACTGGACGACTCTTG
TCCTGCGCCGGCCACGGTCAGGACCAAGATCGGAGCGCAGGTGCCATATA
TATATTGTACATACCAGCACCCACACCAACCGAGATTTTATTTTGGCCCA
AGTCCCCCTACCTATCAACATACCAACACAGGTTTTACAGGACACAGCAC
CGTACCCAACTCGTCGTGACGTGTGTAACGAAGGACGGGCTAGATCGATC
ATGGTGGCGGTAATGAACCACTTCTCCTAACCTCGCCACACCTCCAACCA
AACCACTCACTTTTCGTACAGGGAGTAGTAGTAAGAAGGGTTCCTTCTTC
TTCTTTTTTTCTTCTCAAGCAATCGGCTTTGTTTTTGTCCCGGCGCTTTA
GTATTTTCCTCGTTGTCCCTGTCATACTCCACTATCCTTCATTTCGTTTT
GCAACAGTTGGGGAAGGGAGGAGAGAGAGACGGAGGGAAGGAGGTAAAAA
AGTTGTTGAAGTGTAGAGAGAGGCGTGTTCTACATAGCGCACGCCCCACG
GACTGTCCTCGAGCGTTCCCGCTATAGGTTGCACCGGCTTCAATATTTTA
GTGTCCATCCTTAACCAAGTGTCTTGTTTTTAGTATTCTTTTTGATGTTG
GACTGAGGATAGATGTAGTATTAATAGCACAAGTGATATCCCAACGAGGG
GAGATGAAAATATTTCCTAACTTGGTCACTCCGCTCAAGCAAATCGTATC
CCTCACAAAGTTTGTCGGTCGTCGATTGCTGCTGTGGTGCTGAGTGAAGC
TGTCCTTTGGCCAAGAAGCGTAGGTACTGCCATTGTTGTTGTTGTTATGG
TGTATCTTGTTGATACAAGGAGTTCCTAATACTCCTGGTGGAATTGCGCG
CTAGTTAGTTGACCTCTTGTAGGCCGCCCCCCCCCCCCCCCCCCCCCCGG
CCAGGTGATCCTTGTGAAAAATCTGGCCACCGGACGGCGTTTGGCGAATG
GATCGAGGGGGGTGGTCATAAGGTATACGCACTCGAACGGGATGCGTCTG
CCGGTAGTCCGCTTCACCTCGGGCTTGGAGGAGGTCATGAGGTATACGGT
ACATGTATGCATGCGTCCAGTACAGACAGTACGGACCCTATGACAAGAAA
TCACACAACAGTTCGACGCTCACTGTTTGTTGATCCTTATTTGTTGTGTC
TTTATACTAATTCCTATATAGAAGTGAGGAACAGGATTGCCCATGATTCT
CGCCAAAAGAAGATTCTGATCCTGTGACCCGAAATAAGAGCTTTTTTATC
ACCAGGCCAGTACTGCAAATGAATGATGCACGATGTGTACAGGAGTGTCC
GGTAGCATGACCGATATTTTTGACAACGATTACAAGATTGGGGGTGGAGG
GAGTTCTGGTCAGGGCCAGGGTTGGGGTTACATTTTGAGAGTTTTTGCTA
CATCTTCTATATTTGAAGTATCATTTCATCGACTCTTGGTGCGATCCTTG
GCGTGGTGACGCAACTAGTTGTATACCTGGCTGTTATATATATATACTTG
TTGGTATATCAACACCGGTCTAATTTCAAGGGTATATGTTTTGAAACCCT
AACTAATGTCGAGGTGAAAATTTATACTGTTCCCCCTCAAGATCGATCTG
GATGCAACCTCCCTAGAAGTGAGGGCAAAGGCTTCATCCCCGGGACAAAC
ATAAAAATATGGCGTAATCGACACGAATTAAAAAAAAAAAAAAAGAGGAA
AAAAAAAGCCCATGTATTTTTTTGTGTGCCCTGATCCATTCACGACTGCT
AATAATACTTGAATATCGAATGGACAAGGATGGGTACTTCATTTTTTATG
TGTCCGCTCATTCTGAAACGCGAGTGAAAAGTTTTTAATTTTCGTGGTGA
ACACGCCAATTTGTTCGTATTTGTGCGAGCGGTGAATGGTTTGCCAGTTG
CGTTAGCCGGGTTGTCAAGTCTTGTTCTCAAGTAACAAGGCTTCCTCTCT
GTGCTCCCCCCGTCCTCCCTCCCCCGATGCTGCGGTCGTTTTGCCCTTTC
GTTCCTCCACATTTCCTTGCATCTGCTTGTTGCCTTCTCAGATCTGAGGA
GTTTCCTCTCTATGTGGGTGGAGTCGTAGTGGCCTCGAGGAGACAGCTTC
CGATTGCGCTGGCGTGGGCGCTCAGCGTGCACAAGAGTCAGGGGATGTGA
GTAAAAAACGGGCTTGCTGAAATCATGCCTCCCCCTTCCCCCCCCCCCCA
ATTTCGAAAACATGTGTGTGAGTTTTTAGCATGTGCAGGGAGGTGGTGCA
TGAAATAGGTTGTTGACACCGTGGTTTCCTATTCGTCAGCCGCAGCTGGA
TAATGATCCAGGGCACATGGGTTACACGTGCTCACGCTGAATCAACCTTC
AGGCGACTAGTTTTTTTCTTCTTTTTTTTCACGGGCCCTTTTAACCTTAG
TACAAAACTGAATCTCCTTTTTTTGAACTGGTCCTTTTTTTCTTTTTTCT
TTTTTCTTTTTTAACCCCCCCGGAAGGCTAAGGCAAAAACCTTTATTCGA
TTCTTCCATGAGTATTTGTACCAAAGTATGCACGTCTACATTTCCGTTTA
CAGAACAGAGTTATTTGTTCCTCTGCGGGGTAGGCGCCACCCCGGTTTGG
CTACATCCTAATTTTTGTTTTAGGCTTCTAGATCCATATATATATATATA
TATATATATATATATGGATGGTGTTGTATGTTCCAGCCGATCGACCCCCT
TTGCGGCTCGACCCTTATCGGAAGTCGAGATTTTTTTATGTTGAGGAGTA
CCATGGTCTATATTTAGGTCTTTTTTTAGACGACTAAATACTCGTTGGAT
GTGTCAAGTTCATTTTTTTAATTATTATTAGTCATTAACTGTTAGCTATA
AGTGAATATTTTTTGTTTAGTGTTCGTATCGTTTAGTGTTTATTTGTTCA
TTATTTATTGTTGTTCATTTTTGATTGTTTATTATTTATTGTTGTTCATT
ATTTATTGCTTGTTATTTGTGGTTTTATATCATTCATCATTCATCATTTA
TCGTGAGACGCTAACCGCGTCGGGGCGCTAAATCATGATGCTATTTCGGC
GGAGGGCAAAGTATCGATAGATTAGCAAATAGTCTTCTCGGACAGGATGA
GAGATCACCCCCTCGCCTCCACAACAGCCTTCAATGTCAACGCTACTTTT
TCAGCACCTCAACGGCTATATCTAGGTGGAAAATATGACCAGAGAGCAGA
TCCCAAAAATAGATTTTCAAGTTATGAGCCCCGTTAGGGTCAAGAGGATG
ATGTTTAACTCTTTAAAAAAAAACTCTGACGGTAATTTATGGCATATTAA
CTAAACCGAAAAACAACCGTCTTTCCGTGCAACATATTGCGTGTACAATC
ATGATCCATCATCCATTGGTGAAAAAAACAGGTCTCTGGACCGAGTGAGT
GTGTGCCTATCGCGGGCGTTCGAGTACGGCCAGGCCTACGTGGCTCTGTC
TCGCGTGCGGTCGCTCGAAGGGCTGGTCATCGTGGGCGAGATAGACGCCT
CCAATATACGAGCGCATCCTCGAGTAATAGACTTTTATCGAAGCCTGTCG
GCAGCGGCGGCGTAGCGGCGTATATATTGTTATGTTGGAGTTGTTTGTCG
GGGGGGCTTCCAGGATCGCAAAAATGGAGCATAGAAGCTATCCACAAAAA
AAAACTCGAAAAAGGAACGAATCCACGTCGAAAACTATTAGAGGGAAATA
AACGTAGTTTCGCTTATTTTCTCATATCGAAAACTAGGTAAACAACCATG
GTTACAATTTTTTTGTTTTTTATTGTTTTTTTTTCCGGCCTACGGATCCT
GATGGCGACCTCGTATGAATGGTTGGAAAAAGAAAAAAAAAAAACGGATG
AGTAACGCGTCGGAATTTTGATTTGTTGTTTTTCGGGAGAATGCAACAAT
CCGGTGAGCCACCAGGAAGGACTAGCTCCGTTGTAGATATTTTTTGAGGG
GTGGTACGATGTGGTGAATCTTTTTGGTTTTGCCATCTTTATTATGACTG
CTCTCCAGTCACGTAGAAAAGAAGCCCATAAGATCGTCGGAAGCAAGCAG
CACGAAAATACAAGTGCTTTCAAGAGGACGGGTGTCCTTTTGTAGGACCT
AACAGTGATGCAGATGTACGTAAATAGAGCACTCTACACAGTTTAAATTG
GTCGTTTTTTATTGGGCTGAAACTAGATACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11624:509..6491+

>mRNA_H-paniculata_contig11624.1052.1 ID=mRNA_H-paniculata_contig11624.1052.1|Name=mRNA_H-paniculata_contig11624.1052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig11624:509..6491+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTCTGCCGGTAGTCCGCTTCACCTCGGGCTTGGAGGAGGTCATGAG
ATGCGTCTGCCGGTAGTCCGCTTCACCTCGGGCTTGGAGGAGGTCATGAG
ATCTGAGGAGTTTCCTCTCTATGTGGGTGGAGTCGTAGTGGCCTCGAGGA
GACAGCTTCCGATTGCGCTGGCGTGGGCGCTCAGCGTGCACAAGAGTCAG
GGGATATCTGAGGAGTTTCCTCTCTATGTGGGTGGAGTCGTAGTGGCCTC
GAGGAGACAGCTTCCGATTGCGCTGGCGTGGGCGCTCAGCGTGCACAAGA
GTCAGGGGATGTCTCTGGACCGAGTGAGTGTGTGCCTATCGCGGGCGTTC
GAGTACGGCCAGGCCTACGTGGCTCTGTCTCGCGTGCGGTCGCTCGAAGG
GCTGGTCATCGTGGGCGAGATAGACGCCTCCAATATACGAGCGCATCCTC
GAGTAATAGACTTTTATCGAAGCCTGTCGGCAGCGGCGGCGTAGGTCTCT
GGACCGAGTGAGTGTGTGCCTATCGCGGGCGTTCGAGTACGGCCAGGCCT
ACGTGGCTCTGTCTCGCGTGCGGTCGCTCGAAGGGCTGGTCATCGTGGGC
GAGATAGACGCCTCCAATATACGAGCGCATCCTCGAGTAATAGACTTTTA
TCGAAGCCTGTCGGCAGCGGCGGCGTAG
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