mRNA_H-paniculata_contig11621.1050.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11621.1050.1
Unique NamemRNA_H-paniculata_contig11621.1050.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.370e-46
Identity = 112/269 (41.64%), Postives = 166/269 (61.71%), Query Frame = 3
Query:  516 QAFAIKQVLERERDRDLLSLGELEAKASHRCFGGHRDADHPGK-GRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGE-SLHKDEKASFEKLLQQEG--GDRSAEVFEFESGGTECVDFHVDFM 1298
            QA++  +VL+ ER+RD+  L EL  KA+    G     D   K    + ++ +NEASL+    ++L MAA+ A  +   Y PSTIL W+R+FRK  G  + D R  HE +WI+SEEDL+  +L W+ SQ R + K   +YIN      +  +L R   Y +N+P+S+ST H WM +LGC+Y+RA +S+YTD+HE+K+VVE RG YI ++R +ALRQP W R + +  K E+      L+  G  GD  AEV++ +  G +C++FHVD +
Sbjct:  236 QAYSSLEVLKEERERDVKQL-ELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGG-FRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKDVCKYINGPLLQDDKEDLSRLHAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLL 502          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 8.600e-46
Identity = 110/270 (40.74%), Postives = 165/270 (61.11%), Query Frame = 3
Query:  516 QAFAIKQVLERERDRDLLSLGELEAKASHRCFGGHRDADHPGK-GRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVN--LRWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGE-SLHKDEKASFEKLLQQEG--GDRSAEVFEFESGGTECVDFHVDFM 1298
            QA++  +VL+ ER+RD+  L EL  KA+    G     D   K    + ++ +NEASL+    ++L MAA+ A  +   Y PSTIL W+R+FRK  G  + D R  HE +WI+SEEDL+  +L W+ SQ R + K+  +YIN      +      R   Y +N+P+S+ST+H WM +LGC+Y+R  +S+YTD+HE+K+VVE RG YI ++R +ALRQP W R + +  K E+      L+  G  GD  AEV++ +  G +C++FHVD +
Sbjct:  189 QAYSSLEVLKEERERDVKQL-ELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGG-FRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKEVCKYINGPLLQDDKEEDLSRLHAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLL 456          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.070e-43
Identity = 108/263 (41.06%), Postives = 152/263 (57.79%), Query Frame = 3
Query:  537 VLERERDRDLLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGESLHKDEKASFEKLLQQEG-----GDRSAEVFEFESGGTECVDFHVDFM 1298
            VL+ ER RDL  L +L  +A       +           K +  +NEAS +    ++L +AA         Y  STIL W+R+FR   G  K D R VHER+WI+SEEDL+ +++ W+++QKR++ K    YIN   FA E  +L R   Y +N+P+S++T H WM  LGCKY+RA +S+YTD HE+KDVV  RG YI  KR LALRQP W R +     +  + E+L + +G      D  AEV++    G EC++FHVD +
Sbjct:  198 VLKEERKRDLRQL-QLTQQAKSLSDESYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGS-KRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQR----DTLTPEELQRLDGIKGPAKDFCAEVYDCVVEGRECIEFHVDLL 454          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 7.200e-43
Identity = 106/263 (40.30%), Postives = 152/263 (57.79%), Query Frame = 3
Query:  537 VLERERDRDLLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGESLHKDEKASFEKLLQQEG-----GDRSAEVFEFESGGTECVDFHVDFM 1298
            VL+ ER RDL  L EL  +A       +           K +  +NEAS      ++L +AA         Y  ST+L W+R+FR   G  K D RRVHER+WI+S+EDL+ ++++W+++QKR++ K    YIN   FA E  +L R   + +N+P+S+ T H W+  LGCKY+RA +S+YTD HE+KDVV  RG YI  KR LALRQP W R +     +  + E+L + +G      D  AEV++    G EC++FHVD +
Sbjct:  156 VLKEERKRDLRQL-ELTQQAKSLSDESYTTIPAVKAAEAKRFELLNEASRRRHESSLLRIAARVNSAGSRVYAASTVLGWLRDFRGHGG-FKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSHQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQR----DTLTPEELQRLDGIKGPAEDFCAEVYDCVVEGRECIEFHVDLL 412          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 2.610e-40
Identity = 97/225 (43.11%), Postives = 137/225 (60.89%), Query Frame = 3
Query:  654 KVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGESLHKDEKASFEKLLQQEGG------DRSAEVFEFESGGTECVDFHVDFM 1298
            K ++ +NEAS +    ++L +AA         Y  STIL W+R+FR   G  K D R VHER+WI+SEED + ++++W+++QKR++ K    YIN   FA +  +L R   Y +N+P+S++T H WM  LGCKY+RA +S+YTD HE+KDVV  RG YI  KR LAL QP W R   + +D      K LQ+  G      D  AEV++    G EC++FHVD +
Sbjct:  351 KRFDLLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDPKDELIKWMRTQKRLTVKDVQNYINQWLFANQIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALWQPLWVR---VQRDTLTP--KELQRLDGIKGPAEDFCAEVYDCVVEGRECIEFHVDLL 569          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 8.670e-39
Identity = 94/213 (44.13%), Postives = 127/213 (59.62%), Query Frame = 3
Query:  537 VLERERDRDLLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKR 1163
            VL+ ER RDL  L +L  +A       +           K +  +NEAS +    ++L +AA         Y  STIL W+R+FR   G  K D R VHER+WI+SEEDL+ ++++W++ QKR++ K    YIN   FA E  +L R   Y +N+P+S++T H WM  LGCKY+RA +S+YTD HE+KDVV  RG YI  KR LALRQP W R
Sbjct:   58 VLKEERKRDLRQL-QLTQQAKSLSDESYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKLDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVR 268          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 5.830e-37
Identity = 99/262 (37.79%), Postives = 143/262 (54.58%), Query Frame = 3
Query:  537 VLERERDRDLLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNLRWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGESLHKDEKASFEKLLQQEG-----GDRSAEVFEFESGGTECVDFHVDFM 1298
            VL+ ER RDL  L +L  +A       +           K +  +NEAS +    ++L +AA         Y  STIL W+R+FR   G  K D R VHER+WI+SEEDL+ ++++W+++QKR++ K                        +N+P+S++T H WM  LGCKY+RA +S+YTD HE+KDVV  RG YI  KR LALRQP W R +     +  + E+L + +G      D  AEV++    G EC++FHVD +
Sbjct:  327 VLKEERKRDLRQL-QLTQQAKSLSDESYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTAK-----------------------DVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQR----DTLTPEELQRLDGIKGPAKDFCAEVYDCVVEGRECIEFHVDLL 559          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.920e-34
Identity = 91/209 (43.54%), Postives = 122/209 (58.37%), Query Frame = 3
Query:  537 VLERERDRDLLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQP 1151
            VL+ ER RDL  L EL  +A       +           K    +NEA       ++  +AA         Y  STIL W+R+FR   G  K D R VHER+WI+SEEDL+ ++++W+++QKR++ K    YIN   FA E  +L R   Y +N+P+S++T H WM  LGCKY+RA +S+YTD HE+KDVV  RG YI  KR LALRQP
Sbjct:  136 VLKVERKRDLRQL-ELAQQAKSLSDESYTTIPAVKAAEAKRLELLNEALRRRHESSLWRIAARVNSAGLRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTVKDVQNYINQWLFAYEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQP 342          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5L6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y6_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 7.940e-31
Identity = 95/265 (35.85%), Postives = 137/265 (51.70%), Query Frame = 3
Query:  516 QAFAIKQVLERERDRDLLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGESLHKDEKASFEKLLQQEGGDRSAEVFEFESGGTECVDFHVDFM 1298
            QA++  +VL+ ERD D+  L E   KA+    G   D              +NEASL+     +L +AA+ A  +   Y PSTIL W+R+FRK  G  + D R  HE +WI+SEEDL+  +L W+  Q RV+ K   +YIN      +  +L R   Y +N+P+S+ST H WM +LGCKY+RA +S+YTDSHE+K+        +     L  R P                      EGG   AEV++ +  G +C+ FH+D +
Sbjct:  161 QAYSSLEVLKEERDSDVKQL-ECTRKANGVLSGCKFDL-------------LNEASLVRHEAPLLRIAAKVAGPSPQAYAPSTILRWLRDFRKEGG-FRRDARGAHETDWIMSEEDLKGKLLAWMIPQPRVTVKDVCKYINGPLLQDDKEDLSRLHAYQVNLPVSMSTTHPWMIRLGCKYERATKSFYTDSHEKKEEE------VDRLESLKARGP----------------------EGG-FYAEVYDCKIDGQDCIAFHLDLL 381          
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.700e-30
Identity = 97/263 (36.88%), Postives = 137/263 (52.09%), Query Frame = 3
Query:  537 VLERERDRDLLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLAMAAEAAKVN---YKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLELDMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNL-RWEKYSLNIPISLSTVHMWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKRGESLHKDEKASFEKLLQQEG-----GDRSAEVFEFESGGTECVDFHVDFM 1298
            VL+ ER RDL  L +L  +A       +           K +  + EAS      ++L +AA         Y  STIL W+R+FR   G  K D R VHER+WI+SEEDL+ ++++W++ QKR++ K    YIN   FA E  +L R   Y +N+P+S++T H W+  LGCK               KDVV  RG YI  KR LALRQP W R +     +  + E+L + +G      D  AEV++    G EC++FHVD +
Sbjct:  271 VLKEERKRDLRQL-QLTQQAKSLSDESYTTIPAVKAAEAKRFEVLIEASRRRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWIIALGCK---------------KDVVVCRGKYIDVKRKLALRQPLWVRVQR----DTLTPEELQRLDGIKGPAKDFCAEVYDCVVEGRECIEFHVDLL 512          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11621.1050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L611_9PHAE2.370e-4641.64Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE8.600e-4640.74Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMT5_9PHAE3.070e-4341.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI16_9PHAE7.200e-4340.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE2.610e-4043.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV8_9PHAE8.670e-3944.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE5.830e-3737.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE1.920e-3443.54Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6Y6_9PHAE7.940e-3135.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUI4_9PHAE1.700e-3036.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11621contigH-paniculata_contig11621:2169..3954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size1527
Cds size903
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11621.1050.1prot_H-paniculata_contig11621.1050.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11621 2841..3743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.5978293-UTR-H-paniculata_contig11621:2168..23271622928872.5978293-UTR-H-paniculata_contig11621:2168..2327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11621 2169..2327 +
1691480651.9953957-UTR-H-paniculata_contig11621:2168..23271691480651.9953957-UTR-H-paniculata_contig11621:2168..2327Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11621 2169..2327 +
1622928872.6190958-UTR-H-paniculata_contig11621:2586..28401622928872.6190958-UTR-H-paniculata_contig11621:2586..2840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11621 2587..2840 +
1691480652.005825-UTR-H-paniculata_contig11621:2586..28401691480652.005825-UTR-H-paniculata_contig11621:2586..2840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11621 2587..2840 +
1622928872.647213-UTR-H-paniculata_contig11621:3743..39541622928872.647213-UTR-H-paniculata_contig11621:3743..3954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11621 3744..3954 +
1691480652.030175-UTR-H-paniculata_contig11621:3743..39541691480652.030175-UTR-H-paniculata_contig11621:3743..3954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11621 3744..3954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.6294816-CDS-H-paniculata_contig11621:2840..37431622928872.6294816-CDS-H-paniculata_contig11621:2840..3743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11621 2841..3743 +
1691480652.0165975-CDS-H-paniculata_contig11621:2840..37431691480652.0165975-CDS-H-paniculata_contig11621:2840..3743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11621 2841..3743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11621.1050.1

>prot_H-paniculata_contig11621.1050.1 ID=prot_H-paniculata_contig11621.1050.1|Name=mRNA_H-paniculata_contig11621.1050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=301bp
MMPRKRRPTHALRARSQRRCRRRRSARLRKRLRIQAFAIKQVLERERDRD
LLSLGELEAKASHRCFGGHRDADHPGKGRRKVWNHMNEASLISPRFAMLA
MAAEAAKVNYKPSTILSWVREFRKLSGRLKHDDRRVHEREWILSEEDLEL
DMLRWLKSQKRVSCKKAHQYINHEPFAGEGVNLRWEKYSLNIPISLSTVH
MWMTKLGCKYDRAHQSYYTDSHERKDVVENRGCYISEKRLLALRQPCWKR
GESLHKDEKASFEKLLQQEGGDRSAEVFEFESGGTECVDFHVDFMGRQIE
*
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mRNA from alignment at H-paniculata_contig11621:2169..3954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11621.1050.1 ID=mRNA_H-paniculata_contig11621.1050.1|Name=mRNA_H-paniculata_contig11621.1050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1786bp|location=Sequence derived from alignment at H-paniculata_contig11621:2169..3954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACACACCCTTGGAAGGTTTTACGACACCCAGGAGGAGGCAGAGGCAAC GAAAGAGTGGTGGCGGACGAGTTGGGAGCAGGCATACAAGGGTACGCAGG TTGACCTTTCTCCTCCTTCAGATCAACAGCAGGTTCGGTAGCTGCCGGGT TACCTGAAGGCGAGTTCCGTCAGGTTCTACTGCTGTTGTCTTGGTGTTTT TGAGGCTGTCTGTTTTCATTTGTACTGTTATTTGTACTGTTCGTACTGTT GCTTATACTTCTGTTTGTACTGTGGTCTTTTTGAACTGTTGTTTGTATTG TTGATTTGTACTGCTCTGTGCACGTATTTGCAGTGCTGCTACTACGACAC AAATGCTGTTTGTGTATGTCTTGACTGCTGTTCGCGCTGTCCTCCCTGTT GCTTCCTTTATCCAACAGGGAAGGGGCTAATGTGACACGTGCGGATTGGA TGGCGTCGATACTCGTGAACGATCGAGAGAAGCGGTGCCTCACGCGTGCG TGGACGAGGCACCAGGAGAAAGTGGCCAAGAAGTTCGCGGCACGGAAGTC CTGCCTCGTGGTGCGCGTCGCCGAACTGAAAAAGAGAGCACAGGGGAACG CGAACCTGATCTTCTGGCTTTGAAAGGCAATCATGGGAGACATCGCCAAG CTGCTACAAGCCGACGACAACGATGATGCCGAGGAAGCGGAGGCCGACGC ACGCTCTGCGGGCGAGGTCTCAACGCCGCTGCCGCCGCCGCAGGTCAGCG CGGCTCAGGAAACGGTTGCGCATTCAGGCATTCGCCATCAAACAGGTGTT GGAGCGTGAACGCGATCGGGATTTACTCTCTCTCGGCGAGCTCGAAGCTA AAGCAAGCCATCGATGCTTTGGCGGCCACCGCGACGCAGATCACCCGGGA AAAGGTAGACGAAAGGTGTGGAACCACATGAACGAAGCTTCGCTCATTAG CCCAAGGTTCGCGATGCTGGCGATGGCCGCGGAAGCTGCGAAGGTGAATT ACAAGCCGAGTACGATTCTCTCGTGGGTACGTGAGTTTCGGAAACTTAGC GGACGTTTGAAGCACGACGACCGACGTGTACACGAGAGGGAGTGGATCCT GTCTGAGGAAGATCTTGAGCTCGACATGTTAAGGTGGCTCAAAAGCCAGA AGCGCGTATCGTGTAAGAAGGCTCACCAGTACATCAATCACGAGCCCTTC GCGGGGGAAGGGGTGAACTTGCGGTGGGAAAAGTACAGCTTGAACATACC CATCTCCTTGTCCACAGTCCACATGTGGATGACGAAGCTCGGCTGCAAGT ATGACCGCGCGCACCAGTCGTACTACACAGACTCCCACGAGAGGAAGGAT GTCGTAGAAAATCGCGGGTGCTACATCAGCGAGAAGCGCCTCCTTGCACT GCGGCAACCATGTTGGAAGAGGGGGGAGTCATTGCACAAAGACGAGAAGG CCTCATTCGAGAAGCTTCTGCAGCAGGAGGGTGGGGATCGCTCTGCCGAG GTGTTTGAATTTGAGAGCGGCGGAACAGAATGCGTCGACTTCCACGTTGA CTTCATGGGGCGGCAAATCGAATGAAAGGTACGACGCTCTTCCGTGAGGA ACTGGGGAAGGGGGGCGGGTCGTTCAGCGTCCGCTTTGACACCGCGGCGG CCGCCACCTGCAGGTACTCCCACAAACCCGATGTGTGCAAGTGCAATAAA GTGGTGTATCACATCGGGCAAGACGAAAGCATCTACAAGCATACGCGCGC AAGAGGAACGAGTGGGTGATCAGGGGAGTCAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11621:2169..3954+

>mRNA_H-paniculata_contig11621.1050.1 ID=mRNA_H-paniculata_contig11621.1050.1|Name=mRNA_H-paniculata_contig11621.1050.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig11621:2169..3954+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCCGAGGAAGCGGAGGCCGACGCACGCTCTGCGGGCGAGGTCTCA
ACGCCGCTGCCGCCGCCGCAGGTCAGCGCGGCTCAGGAAACGGTTGCGCA
TTCAGGCATTCGCCATCAAACAGGTGTTGGAGCGTGAACGCGATCGGGAT
TTACTCTCTCTCGGCGAGCTCGAAGCTAAAGCAAGCCATCGATGCTTTGG
CGGCCACCGCGACGCAGATCACCCGGGAAAAGGTAGACGAAAGGTGTGGA
ACCACATGAACGAAGCTTCGCTCATTAGCCCAAGGTTCGCGATGCTGGCG
ATGGCCGCGGAAGCTGCGAAGGTGAATTACAAGCCGAGTACGATTCTCTC
GTGGGTACGTGAGTTTCGGAAACTTAGCGGACGTTTGAAGCACGACGACC
GACGTGTACACGAGAGGGAGTGGATCCTGTCTGAGGAAGATCTTGAGCTC
GACATGTTAAGGTGGCTCAAAAGCCAGAAGCGCGTATCGTGTAAGAAGGC
TCACCAGTACATCAATCACGAGCCCTTCGCGGGGGAAGGGGTGAACTTGC
GGTGGGAAAAGTACAGCTTGAACATACCCATCTCCTTGTCCACAGTCCAC
ATGTGGATGACGAAGCTCGGCTGCAAGTATGACCGCGCGCACCAGTCGTA
CTACACAGACTCCCACGAGAGGAAGGATGTCGTAGAAAATCGCGGGTGCT
ACATCAGCGAGAAGCGCCTCCTTGCACTGCGGCAACCATGTTGGAAGAGG
GGGGAGTCATTGCACAAAGACGAGAAGGCCTCATTCGAGAAGCTTCTGCA
GCAGGAGGGTGGGGATCGCTCTGCCGAGGTGTTTGAATTTGAGAGCGGCG
GAACAGAATGCGTCGACTTCCACGTTGACTTCATGGGGCGGCAAATCGAA
TGAATGATGCCGAGGAAGCGGAGGCCGACGCACGCTCTGCGGGCGAGGTC
TCAACGCCGCTGCCGCCGCCGCAGGTCAGCGCGGCTCAGGAAACGGTTGC
GCATTCAGGCATTCGCCATCAAACAGGTGTTGGAGCGTGAACGCGATCGG
GATTTACTCTCTCTCGGCGAGCTCGAAGCTAAAGCAAGCCATCGATGCTT
TGGCGGCCACCGCGACGCAGATCACCCGGGAAAAGGTAGACGAAAGGTGT
GGAACCACATGAACGAAGCTTCGCTCATTAGCCCAAGGTTCGCGATGCTG
GCGATGGCCGCGGAAGCTGCGAAGGTGAATTACAAGCCGAGTACGATTCT
CTCGTGGGTACGTGAGTTTCGGAAACTTAGCGGACGTTTGAAGCACGACG
ACCGACGTGTACACGAGAGGGAGTGGATCCTGTCTGAGGAAGATCTTGAG
CTCGACATGTTAAGGTGGCTCAAAAGCCAGAAGCGCGTATCGTGTAAGAA
GGCTCACCAGTACATCAATCACGAGCCCTTCGCGGGGGAAGGGGTGAACT
TGCGGTGGGAAAAGTACAGCTTGAACATACCCATCTCCTTGTCCACAGTC
CACATGTGGATGACGAAGCTCGGCTGCAAGTATGACCGCGCGCACCAGTC
GTACTACACAGACTCCCACGAGAGGAAGGATGTCGTAGAAAATCGCGGGT
GCTACATCAGCGAGAAGCGCCTCCTTGCACTGCGGCAACCATGTTGGAAG
AGGGGGGAGTCATTGCACAAAGACGAGAAGGCCTCATTCGAGAAGCTTCT
GCAGCAGGAGGGTGGGGATCGCTCTGCCGAGGTGTTTGAATTTGAGAGCG
GCGGAACAGAATGCGTCGACTTCCACGTTGACTTCATGGGGCGGCAAATC
GAATGA
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