mRNA_H-paniculata_contig1162.1048.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1162.1048.1
Unique NamemRNA_H-paniculata_contig1162.1048.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1162.1048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1162contigH-paniculata_contig1162:23042..24594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1555
Cds size1551
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.437995-CDS-H-paniculata_contig1162:23041..245921622928872.437995-CDS-H-paniculata_contig1162:23041..24592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1162 23042..24592 +
1691480651.9429946-CDS-H-paniculata_contig1162:23041..245921691480651.9429946-CDS-H-paniculata_contig1162:23041..24592Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1162 23042..24592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1162.1048.1prot_H-paniculata_contig1162.1048.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1162 23042..24592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1162.1048.1

>prot_H-paniculata_contig1162.1048.1 ID=prot_H-paniculata_contig1162.1048.1|Name=mRNA_H-paniculata_contig1162.1048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=517bp
LAGESFDRSNRANNCILATTPRWRQPQHLALPSCAKLPAAGAGAEEEEEE
QGLFNRLPDIRTSLHHLHSASAKRPPWRRRSPDASPQRHGDALQWLAQGT
ILHDDGFNWIHEGAHLHELSASAQQKQQWQEPSPLPPPPRRPQCPDTLRE
DQARWLAPPTMLNQEPPVQEFGWVGDGGLSHQLSESARKQQQERSRPSSY
PWREHEAQSQPQEGDNRGHGPVGGLRSHSRDERSGRLSPGRCNYHRHTKD
RRYDSGGPRDIPARHAANDRLPSLRHELEGSHPHHPREADIRNDNYIVHE
TYFAGRQENRSVPRASVAAAEATGGRGVDNGLQPRRGHVNGGGGGCGGEE
GWRRADRKNDHDPASYLHDCRRGEERGRSREVVRRYNVGQGEVASWRDER
DDGNVYHSHADHHHQDHLDHMRHTYEGQRECERGRDWDGGRGSVGVGVGV
VVVGSGRDSACRSSKRWHGGGDGHSPVPKRRDSEEYGVRRTRCQREEAYH
GSAGRSRDGFEGSQEWE
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mRNA from alignment at H-paniculata_contig1162:23042..24594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1162.1048.1 ID=mRNA_H-paniculata_contig1162.1048.1|Name=mRNA_H-paniculata_contig1162.1048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1553bp|location=Sequence derived from alignment at H-paniculata_contig1162:23042..24594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCCGGCGAAAGTTTTGATCGATCAAACAGGGCAAATAATTGCATCCT
GGCTACGACACCACGGTGGCGCCAGCCGCAGCATCTGGCCTTGCCGTCTT
GCGCCAAGCTGCCAGCAGCAGGGGCAGGGGCAGAGGAGGAGGAAGAGGAG
CAGGGGCTCTTCAACCGTCTCCCTGATATACGTACGAGCTTGCACCACCT
GCACAGCGCGTCAGCGAAGCGGCCGCCGTGGCGGCGGCGGAGCCCGGACG
CTTCGCCGCAACGACACGGCGATGCGCTGCAGTGGCTCGCGCAGGGAACA
ATACTGCATGACGACGGTTTCAACTGGATCCATGAAGGTGCGCACTTACA
CGAGCTGAGCGCGTCGGCGCAGCAGAAGCAGCAATGGCAGGAGCCGTCAC
CGCTGCCGCCGCCGCCACGGCGTCCGCAATGCCCAGACACTCTGCGGGAG
GACCAGGCGCGGTGGCTCGCACCCCCCACGATGCTCAACCAGGAACCGCC
GGTGCAGGAGTTCGGCTGGGTCGGTGACGGTGGGCTCTCCCACCAGTTGA
GCGAGTCAGCGCGGAAACAGCAGCAGGAGCGGTCGCGGCCGAGCTCGTAC
CCTTGGCGCGAGCACGAGGCTCAGTCGCAGCCTCAGGAGGGCGATAATCG
TGGACATGGTCCTGTCGGGGGACTTCGGAGCCACTCCAGGGACGAACGCA
GCGGGCGGTTATCTCCAGGGCGTTGCAACTACCATCGTCACACGAAAGAT
CGTCGTTACGATAGCGGCGGTCCCCGCGACATCCCGGCGCGACATGCGGC
AAATGATCGCTTGCCCTCGTTGCGTCACGAACTGGAAGGGTCCCACCCCC
ATCATCCTCGTGAGGCGGACATCCGAAATGACAACTACATTGTGCACGAA
ACGTATTTTGCGGGTCGCCAGGAAAACCGCAGTGTTCCCCGTGCATCGGT
CGCAGCAGCAGAAGCCACCGGGGGGCGGGGTGTTGACAATGGCTTGCAGC
CCAGACGCGGGCATGTTAACGGTGGCGGCGGTGGCTGTGGCGGTGAGGAG
GGGTGGCGTAGAGCGGACCGGAAAAACGACCATGATCCCGCCTCGTATCT
CCACGACTGTAGAAGGGGCGAAGAGAGAGGTCGTAGCAGGGAAGTGGTGA
GGAGATACAACGTTGGACAGGGAGAAGTAGCCTCCTGGAGAGACGAGCGG
GACGACGGGAACGTGTACCATAGTCACGCCGATCACCACCATCAAGATCA
TCTTGACCATATGAGGCACACATACGAGGGGCAACGGGAGTGCGAACGTG
GTCGTGACTGGGATGGTGGGCGTGGTAGTGTTGGTGTTGGTGTTGGTGTT
GTTGTTGTTGGGTCGGGGCGTGATTCCGCTTGTAGGTCATCCAAACGGTG
GCACGGGGGAGGCGATGGTCATTCTCCAGTACCCAAAAGGAGGGACAGCG
AGGAGTACGGGGTGCGACGGACCAGGTGCCAGCGCGAAGAGGCTTATCAT
GGGTCGGCAGGGAGGTCAAGGGACGGGTTCGAAGGAAGCCAGGAATGGGA
AGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1162:23042..24594+

>mRNA_H-paniculata_contig1162.1048.1 ID=mRNA_H-paniculata_contig1162.1048.1|Name=mRNA_H-paniculata_contig1162.1048.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3102bp|location=Sequence derived from alignment at H-paniculata_contig1162:23042..24594+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCCGGCGAAAGTTTTGATCGATCAAACAGGGCAAATAATTGCATCCT
GGCTACGACACCACGGTGGCGCCAGCCGCAGCATCTGGCCTTGCCGTCTT
GCGCCAAGCTGCCAGCAGCAGGGGCAGGGGCAGAGGAGGAGGAAGAGGAG
CAGGGGCTCTTCAACCGTCTCCCTGATATACGTACGAGCTTGCACCACCT
GCACAGCGCGTCAGCGAAGCGGCCGCCGTGGCGGCGGCGGAGCCCGGACG
CTTCGCCGCAACGACACGGCGATGCGCTGCAGTGGCTCGCGCAGGGAACA
ATACTGCATGACGACGGTTTCAACTGGATCCATGAAGGTGCGCACTTACA
CGAGCTGAGCGCGTCGGCGCAGCAGAAGCAGCAATGGCAGGAGCCGTCAC
CGCTGCCGCCGCCGCCACGGCGTCCGCAATGCCCAGACACTCTGCGGGAG
GACCAGGCGCGGTGGCTCGCACCCCCCACGATGCTCAACCAGGAACCGCC
GGTGCAGGAGTTCGGCTGGGTCGGTGACGGTGGGCTCTCCCACCAGTTGA
GCGAGTCAGCGCGGAAACAGCAGCAGGAGCGGTCGCGGCCGAGCTCGTAC
CCTTGGCGCGAGCACGAGGCTCAGTCGCAGCCTCAGGAGGGCGATAATCG
TGGACATGGTCCTGTCGGGGGACTTCGGAGCCACTCCAGGGACGAACGCA
GCGGGCGGTTATCTCCAGGGCGTTGCAACTACCATCGTCACACGAAAGAT
CGTCGTTACGATAGCGGCGGTCCCCGCGACATCCCGGCGCGACATGCGGC
AAATGATCGCTTGCCCTCGTTGCGTCACGAACTGGAAGGGTCCCACCCCC
ATCATCCTCGTGAGGCGGACATCCGAAATGACAACTACATTGTGCACGAA
ACGTATTTTGCGGGTCGCCAGGAAAACCGCAGTGTTCCCCGTGCATCGGT
CGCAGCAGCAGAAGCCACCGGGGGGCGGGGTGTTGACAATGGCTTGCAGC
CCAGACGCGGGCATGTTAACGGTGGCGGCGGTGGCTGTGGCGGTGAGGAG
GGGTGGCGTAGAGCGGACCGGAAAAACGACCATGATCCCGCCTCGTATCT
CCACGACTGTAGAAGGGGCGAAGAGAGAGGTCGTAGCAGGGAAGTGGTGA
GGAGATACAACGTTGGACAGGGAGAAGTAGCCTCCTGGAGAGACGAGCGG
GACGACGGGAACGTGTACCATAGTCACGCCGATCACCACCATCAAGATCA
TCTTGACCATATGAGGCACACATACGAGGGGCAACGGGAGTGCGAACGTG
GTCGTGACTGGGATGGTGGGCGTGGTAGTGTTGGTGTTGGTGTTGGTGTT
GTTGTTGTTGGGTCGGGGCGTGATTCCGCTTGTAGGTCATCCAAACGGTG
GCACGGGGGAGGCGATGGTCATTCTCCAGTACCCAAAAGGAGGGACAGCG
AGGAGTACGGGGTGCGACGGACCAGGTGCCAGCGCGAAGAGGCTTATCAT
GGGTCGGCAGGGAGGTCAAGGGACGGGTTCGAAGGAAGCCAGGAATGGGA
ATTGGCCGGCGAAAGTTTTGATCGATCAAACAGGGCAAATAATTGCATCC
TGGCTACGACACCACGGTGGCGCCAGCCGCAGCATCTGGCCTTGCCGTCT
TGCGCCAAGCTGCCAGCAGCAGGGGCAGGGGCAGAGGAGGAGGAAGAGGA
GCAGGGGCTCTTCAACCGTCTCCCTGATATACGTACGAGCTTGCACCACC
TGCACAGCGCGTCAGCGAAGCGGCCGCCGTGGCGGCGGCGGAGCCCGGAC
GCTTCGCCGCAACGACACGGCGATGCGCTGCAGTGGCTCGCGCAGGGAAC
AATACTGCATGACGACGGTTTCAACTGGATCCATGAAGGTGCGCACTTAC
ACGAGCTGAGCGCGTCGGCGCAGCAGAAGCAGCAATGGCAGGAGCCGTCA
CCGCTGCCGCCGCCGCCACGGCGTCCGCAATGCCCAGACACTCTGCGGGA
GGACCAGGCGCGGTGGCTCGCACCCCCCACGATGCTCAACCAGGAACCGC
CGGTGCAGGAGTTCGGCTGGGTCGGTGACGGTGGGCTCTCCCACCAGTTG
AGCGAGTCAGCGCGGAAACAGCAGCAGGAGCGGTCGCGGCCGAGCTCGTA
CCCTTGGCGCGAGCACGAGGCTCAGTCGCAGCCTCAGGAGGGCGATAATC
GTGGACATGGTCCTGTCGGGGGACTTCGGAGCCACTCCAGGGACGAACGC
AGCGGGCGGTTATCTCCAGGGCGTTGCAACTACCATCGTCACACGAAAGA
TCGTCGTTACGATAGCGGCGGTCCCCGCGACATCCCGGCGCGACATGCGG
CAAATGATCGCTTGCCCTCGTTGCGTCACGAACTGGAAGGGTCCCACCCC
CATCATCCTCGTGAGGCGGACATCCGAAATGACAACTACATTGTGCACGA
AACGTATTTTGCGGGTCGCCAGGAAAACCGCAGTGTTCCCCGTGCATCGG
TCGCAGCAGCAGAAGCCACCGGGGGGCGGGGTGTTGACAATGGCTTGCAG
CCCAGACGCGGGCATGTTAACGGTGGCGGCGGTGGCTGTGGCGGTGAGGA
GGGGTGGCGTAGAGCGGACCGGAAAAACGACCATGATCCCGCCTCGTATC
TCCACGACTGTAGAAGGGGCGAAGAGAGAGGTCGTAGCAGGGAAGTGGTG
AGGAGATACAACGTTGGACAGGGAGAAGTAGCCTCCTGGAGAGACGAGCG
GGACGACGGGAACGTGTACCATAGTCACGCCGATCACCACCATCAAGATC
ATCTTGACCATATGAGGCACACATACGAGGGGCAACGGGAGTGCGAACGT
GGTCGTGACTGGGATGGTGGGCGTGGTAGTGTTGGTGTTGGTGTTGGTGT
TGTTGTTGTTGGGTCGGGGCGTGATTCCGCTTGTAGGTCATCCAAACGGT
GGCACGGGGGAGGCGATGGTCATTCTCCAGTACCCAAAAGGAGGGACAGC
GAGGAGTACGGGGTGCGACGGACCAGGTGCCAGCGCGAAGAGGCTTATCA
TGGGTCGGCAGGGAGGTCAAGGGACGGGTTCGAAGGAAGCCAGGAATGGG
AA
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