mRNA_H-paniculata_contig1162.1046.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1162.1046.1
Unique NamemRNA_H-paniculata_contig1162.1046.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1162.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1162contigH-paniculata_contig1162:17973..18399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size427
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928872.3298054-CDS-H-paniculata_contig1162:17972..183981622928872.3298054-CDS-H-paniculata_contig1162:17972..18398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1162 17973..18398 +
1691480651.9147844-CDS-H-paniculata_contig1162:17972..183981691480651.9147844-CDS-H-paniculata_contig1162:17972..18398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1162 17973..18398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1162.1046.1prot_H-paniculata_contig1162.1046.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1162 17973..18398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1162.1046.1

>prot_H-paniculata_contig1162.1046.1 ID=prot_H-paniculata_contig1162.1046.1|Name=mRNA_H-paniculata_contig1162.1046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
AAPKVISGRKDKDGGNDDDKSHTLSVQSGLSQTMDGKEGNNVATAGGATG
TSCGPVDGCAGGPSSSASPKTRGAWRGRDDQDSSSPGKKASSSSPQKDGC
GKKPVAAAVAASVTRTNNKQKQVARSSGDSGNGKGKGKGKVK
back to top

mRNA from alignment at H-paniculata_contig1162:17973..18399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1162.1046.1 ID=mRNA_H-paniculata_contig1162.1046.1|Name=mRNA_H-paniculata_contig1162.1046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=427bp|location=Sequence derived from alignment at H-paniculata_contig1162:17973..18399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCTCCCAAAGTTATCAGTGGAAGGAAAGACAAGGATGGTGGTAATGA
TGATGACAAGAGTCACACGTTGTCTGTCCAGTCGGGGCTCTCGCAGACTA
TGGATGGAAAAGAAGGAAATAACGTTGCTACTGCTGGTGGTGCTACTGGT
ACGTCATGTGGTCCTGTGGATGGGTGCGCCGGAGGACCCAGTAGTAGCGC
GAGCCCGAAAACAAGGGGGGCGTGGCGGGGGCGGGACGACCAGGATTCGT
CTTCGCCCGGGAAAAAGGCCAGCTCTTCTTCTCCCCAAAAGGACGGCTGC
GGGAAGAAGCCGGTCGCTGCCGCTGTCGCCGCCTCCGTTACGAGGACGAA
CAACAAGCAAAAGCAGGTCGCGAGAAGTAGTGGGGACAGCGGGAACGGCA
AAGGGAAGGGGAAGGGGAAGGTGAAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1162:17973..18399+

>mRNA_H-paniculata_contig1162.1046.1 ID=mRNA_H-paniculata_contig1162.1046.1|Name=mRNA_H-paniculata_contig1162.1046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig1162:17973..18399+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGCTCCCAAAGTTATCAGTGGAAGGAAAGACAAGGATGGTGGTAATGA
TGATGACAAGAGTCACACGTTGTCTGTCCAGTCGGGGCTCTCGCAGACTA
TGGATGGAAAAGAAGGAAATAACGTTGCTACTGCTGGTGGTGCTACTGGT
ACGTCATGTGGTCCTGTGGATGGGTGCGCCGGAGGACCCAGTAGTAGCGC
GAGCCCGAAAACAAGGGGGGCGTGGCGGGGGCGGGACGACCAGGATTCGT
CTTCGCCCGGGAAAAAGGCCAGCTCTTCTTCTCCCCAAAAGGACGGCTGC
GGGAAGAAGCCGGTCGCTGCCGCTGTCGCCGCCTCCGTTACGAGGACGAA
CAACAAGCAAAAGCAGGTCGCGAGAAGTAGTGGGGACAGCGGGAACGGCA
AAGGGAAGGGGAAGGGGAAGGTGAAGGCGGCTCCCAAAGTTATCAGTGGA
AGGAAAGACAAGGATGGTGGTAATGATGATGACAAGAGTCACACGTTGTC
TGTCCAGTCGGGGCTCTCGCAGACTATGGATGGAAAAGAAGGAAATAACG
TTGCTACTGCTGGTGGTGCTACTGGTACGTCATGTGGTCCTGTGGATGGG
TGCGCCGGAGGACCCAGTAGTAGCGCGAGCCCGAAAACAAGGGGGGCGTG
GCGGGGGCGGGACGACCAGGATTCGTCTTCGCCCGGGAAAAAGGCCAGCT
CTTCTTCTCCCCAAAAGGACGGCTGCGGGAAGAAGCCGGTCGCTGCCGCT
GTCGCCGCCTCCGTTACGAGGACGAACAACAAGCAAAAGCAGGTCGCGAG
AAGTAGTGGGGACAGCGGGAACGGCAAAGGGAAGGGGAAGGGGAAGGTGA
AG
back to top