mRNA_H-paniculata_contig11607.1038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11607.1038.1
Unique NamemRNA_H-paniculata_contig11607.1038.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A6H5K2I2_9PHAE (DUF305 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2I2_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 1.260e-125
Identity = 177/255 (69.41%), Postives = 214/255 (83.92%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHVGVDQLEDDVGNGDEPVYIIDGYSYDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTEIFYFCHIHAGMSGRIYIVDAEGDSVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTVVFMHQMIPHHENAVNMAKILLQNPGGE-LEEDVSSLLRDIINTQTAQISFMRTFLDGTTADL 764
            GETYEF+QL+ASNW+HPLGFAY+PDG H GVD+LE+ +G+GD PVY+IDG   DL+TY+P FF+PEE W++  +TV+LTVTDP VTEIFYFCHIH GMSGRIYIVDAEGD+ A  +IELY PL    FD ECGTF + DYAP+ GTF+S LCP+Q+F+CGD  +SFD CMHAIDCKMNYEMRIE+A + SNTV FMHQMIPHHENAVNMA++LL+NPG E L+E+V+++LRDIINTQ  QI+FMR FL    A+L
Sbjct:    4 GETYEFSQLEASNWYHPLGFAYYPDGAHAGVDELEEGIGSGDAPVYVIDGALSDLDTYEPQFFFPEETWLETNYTVELTVTDPDVTEIFYFCHIHNGMSGRIYIVDAEGDTPADAEIELYDPLEFDEFDEECGTFGSADYAPVDGTFDSELCPNQKFLCGDVDSSFDRCMHAIDCKMNYEMRIEKAVATSNTVAFMHQMIPHHENAVNMARVLLKNPGDEGLDEEVAAILRDIINTQNYQITFMRGFLTDNGAEL 258
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: D7FP23_ECTSI (DUF305 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP23_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 4.730e-118
Identity = 175/255 (68.63%), Postives = 212/255 (83.14%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHVGVDQLEDDVGNGDEPVYIIDGYSYDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTEIFYFCHIHAGMSGRIYIVDAEGDSVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTVVFMHQMIPHHENAVNMAKILLQNPGGE-LEEDVSSLLRDIINTQTAQISFMRTFLDGTTADL 764
            GETYEF+QL+ASNW+HPLGFAY+PDG H GVD+LE+ +G+GD PVY+IDG   DL+TY+P FF+PEE W++  +TV+LTVTDP VTEIFYFCHIH GMSGRI+IVDAEGD+ A  +IELY PL    FD ECGTF + DYAP  GTF+S LCP+Q+F+CGD  +SFD CMHAIDCKMNYEMR+E+  + SNTV FMHQMIPHHENAVNMA+ILL+NPG E L+E+V+++LRDIINTQ  QI+FMR FL    A+L
Sbjct:   13 GETYEFSQLEASNWYHPLGFAYYPDGAHEGVDELEEGIGSGDAPVYVIDGGLSDLDTYEPQFFFPEETWMETNYTVELTVTDPDVTEIFYFCHIHNGMSGRIHIVDAEGDTPADTEIELYEPLEFDEFDEECGTFGSADYAPADGTFDSELCPNQKFLCGDVDSSFDRCMHAIDCKMNYEMRVEKEVATSNTVAFMHQMIPHHENAVNMARILLKNPGDEELDEEVAAILRDIINTQNFQITFMRGFLTDNGAEL 267
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A0L0GD09_9EUKA (DUF305 domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GD09_9EUKA)

HSP 1 Score: 245 bits (625), Expect = 3.450e-71
Identity = 127/250 (50.80%), Postives = 162/250 (64.80%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHVGVDQLEDDVGNGDEPVYIIDGYSYDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTEIFYFCHIHAGMSGRIYIVDAEGDSVAPPQIE-LYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTVVFMHQMIPHHENAVNMAKILLQN--PGGELEEDVSSLLRDIINTQTAQISFMRTFL 743
            GETY F Q D SNW+HPLGFAYF DG H GVD+LE+ +  GD PVY+I+    +L+ Y+P F +P E W  N +TV+LT+ DP +T+ FYFCH+H  MS RI +VD EGD     +++ LYA   +S FD  CGT     ++   G  +   C    F+CGD    F  C++AIDCKMNYEM +E   + S  V FMHQMIPHH NAVNMAKILL+        + DV  +LRD+INTQ AQI+FMR +L
Sbjct:   56 GETYTFVQKDISNWYHPLGFAYFADGAHEGVDELEEGLRGGDYPVYMINNELSELDIYEPEFTFPLEFWETNNYTVELTINDPNLTDFFYFCHVHNKMSARIVVVDNEGDQPTEAELQPLYAFTNQSGFDSMCGTTDAAQFSAQSGGIDE-YCDGSVFLCGDQDDKFVQCINAIDCKMNYEMTVENYGNNS-IVTFMHQMIPHHVNAVNMAKILLKEILEDNVDDPDVEVMLRDVINTQNAQITFMRGYL 303
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BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A7R9SV77_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SV77_9CHLO)

HSP 1 Score: 214 bits (546), Expect = 4.050e-60
Identity = 116/254 (45.67%), Postives = 148/254 (58.27%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHVGVDQLEDDVGNGDEPVYIIDGYS--YDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTEIFYFCHIHAGMSGRIYIVDAEGDSVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTVVFMHQMIPHHENAVNMAKILLQNPG----GELEEDVSSLLRDIINTQTAQISFMRTFLD 746
            GETY F Q D SNW+HPLGFAY+PDG H    ++E+D G G+   Y+I+G      L+ Y+P F      W  + + + LT+ DP  TEIFYFCHIH  MSGRI I +A    V     ELYAP V   FD  CGTF T ++           CP+  F+CG     F  CM AIDCKMNYEMR+      +  V F+HQMIPHH NAVNMAKILL+        + E ++  +L  I+N Q  QI++MR +L+
Sbjct:   59 GETYTFIQNDVSNWYHPLGFAYYPDGAHEDQPEVENDDGTGNVLTYLINGIEPPLGLDDYEPAFAVARADWKMHSYEINLTINDPNTTEIFYFCHIHNKMSGRIRINNANEPYVPK---ELYAPYVPDSFDATCGTFETHNF----DLNSENYCPNSTFLCGAEDNQFSKCMQAIDCKMNYEMRVTNF-EPNPIVTFIHQMIPHHVNAVNMAKILLKTTDMDETNDDELEMKEMLLSIVNGQNEQITYMRKWLN 304
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A7S0DZJ1_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0DZJ1_9EUKA)

HSP 1 Score: 185 bits (469), Expect = 3.140e-48
Identity = 112/286 (39.16%), Postives = 159/286 (55.59%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHV---GVDQLEDDVGNGDEPVYIIDGYSYD--------LETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTE-----IFYFCHIHAGMSGRIYIVDAEGD----SVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTVVFMHQMIPHHENAVNMAKILLQNPGGELE--EDVSSLLRDIINTQTAQISFMRTFLD--GTTADLC*MVQYSY 788
            G+TY F+Q D +NW+HP+GFAY PDG H    G D+L++  G G E +Y I+G +          L+ Y+P FFYP +VW+   +T +LT+T           I+YFCHIH+ MSG+I I   +G     ++ P ++ELY+P+V S FD  CGT    +Y+   G    + C D++FV G    +FD C+ A+DC MN EM +      +    F+ QMIPHH NAVNMAK+LL+   G +   + +  +L  I++TQ  QI   R  L   G T   C     SY
Sbjct:  118 GQTYTFDQSDPTNWYHPVGFAYEPDGAHGSTWGGDELDEVEGKG-ELLYKINGAATTCDDAGDTGLDCYEPEFFYPRDVWIGATYTAELTITQAVADRSHGGVIYYFCHIHSKMSGKIVINTVDGTRFEPTLNPTELELYSPVVLSTFDKNCGTTAVVEYSDATG---GMAC-DERFVPGAIDTTFDHCLQAVDCAMNKEMHVPLKAPLTT---FLEQMIPHHANAVNMAKLLLKTDLGAVAATDGLEDILYGIVSTQNFQIHQFRNILSAVGDTHAQCQAANGSY 395
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A7S0E333_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E333_9EUKA)

HSP 1 Score: 181 bits (460), Expect = 6.850e-48
Identity = 107/278 (38.49%), Postives = 153/278 (55.04%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHV---GVDQLEDDVGNGDEPVYIIDGYSYD--------LETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTE-----IFYFCHIHAGMSGRIYIVDAEGD----SVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTAS--FDSCMHAIDCKMNYEMRIERATS-ASNTVVFMHQMIPHHENAVNMAKILLQNPGGELE--EDVSSLLRDIINTQTAQISFMRTFLDGTTAD 761
            G+TY F+Q D +NW+HP+GFAY PDG H    G D+L++  G G E +Y I+G +          L+ Y+P FFYP +VW+   +T +LT+T           I+YFCHIH+ MSG+I I   +G     ++ P ++ELY+P+V+S  D  CGT     Y     T+   +     F+CGD   +  F  C+  +DC MN  M  E     AS  V FM QMIPHH NAVNMAK+LL+     +   + +  +L DI+N Q  Q+   R +L+  T +
Sbjct:   33 GQTYTFDQSDPTNWYHPVGFAYEPDGAHGSTWGGDELDEVEGKG-ELLYKINGAATTCDDAGDTGLDCYEPEFFYPRDVWIGATYTAELTITQAVADRSHGGVIYYFCHIHSKMSGKIVINTVDGTRFEPTLNPTELELYSPVVRSAIDATCGTTGVAQY-----TYGQSMACSGSFLCGDLDTNPRFGQCLQGVDCAMNKGMFGESTPDHASPVVTFMEQMIPHHLNAVNMAKLLLKTDLDSVAATDGLEDILWDIVNVQNYQVHQFRNYLEANTGN 304
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A7S1I2T7_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I2T7_9EUGL)

HSP 1 Score: 181 bits (460), Expect = 7.220e-48
Identity = 107/265 (40.38%), Postives = 149/265 (56.23%), Query Frame = 3 
Query:   12 YEFNQLDASNWFHPLGFAYFPDGKHV------GVDQLEDDVG-NGDEPVYIIDGYSYDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVT-EIFYFCHIHAGMSGRIYIVDAEGDSVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQ--FVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTVVFMHQMIPHHENAVNMAKILLQNP---GGELE--------EDVSSLLRDIINTQTAQISFMRTFL 743
            Y F+Q D +NW HPLG A+ PDG H       G  ++ D  G  G   VY +DG +  LE Y+ +FF+P+  W ++ + +++++ DP +  EI YFCHIH  MSG I+I    GD++      +YAP     FD  CGT+    Y+      E   C  +Q  F+CG   + F  CM AIDCKMN+EM ++    AS    FMHQMIPHH NAVNMA+ILL+     GG ++        + V  +L +I+NTQ  Q+S MR +L
Sbjct:   31 YVFDQNDITNWMHPLGLAFKPDGAHDVSYGPDGAPEVVDGAGAKGYTYVYKVDGSNVTLEDYERMFFWPKAEWSKHSYHIEVSIVDPNIAKEIVYFCHIHNKMSGLIHIQGGVGDTIT-----MYAPYEPDAFDATCGTYGAGPYSK--RVSEGGRCMHEQATFMCGAVDSQFAKCMDAIDCKMNHEMSVQNIP-ASPVATFMHQMIPHHVNAVNMARILLKQSKAYGGSIDMAGEEGKYDGVQDMLIEIVNTQNYQMSEMRKWL 287
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A7S3PVF0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PVF0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.070e-47
Identity = 109/270 (40.37%), Postives = 149/270 (55.19%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHV---GVDQLEDDVGNGDEPVYIIDGY--------SYDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTE-----IFYFCHIHAGMSGRIYIVDAEGD--SVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTV-VFMHQMIPHHENAVNMAKILLQNPGGELE--EDVSSLLRDIINTQTAQISFMRTFLDG 749
            G+T  F+Q DA+NW+H +GFAY PDG H    G D+  +  G G E  Y IDG            L+ Y+P FFYP   W+   ++ +LT+T           I+YFCHIH+ MSG+I I + +G   S    ++ELY P V   FD  CGT    +YA       S+      F  G     F+ C++A+DC+M+YEM  E   + S+ V +FM QMIPHH NAVNMAK+LL+    E++  +D+  +L DIINTQ  QI   R +L G
Sbjct:   67 GQTLTFDQTDATNWYHAVGFAYEPDGAHGDDWGADENPEVEGAG-ELQYKIDGQIPTCDDAGDTGLDCYEPEFFYPRGDWMGKVYSAELTITPDVAAASKGGVIYYFCHIHSKMSGKIVIKNGDGTDYSNGSDELELYEPTVNDAFDANCGTSDVSEYADGAKNECSI-----DFFAGMKDTDFEKCLYAVDCQMHYEMYSETTANESDKVALFMQQMIPHHVNAVNMAKLLLKQAKAEVDAVDDLEDILHDIINTQNFQIHQFRNYLGG 330
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A813ET61_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813ET61_POLGL)

HSP 1 Score: 186 bits (473), Expect = 4.580e-46
Identity = 113/278 (40.65%), Postives = 154/278 (55.40%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHVGV--DQLEDDVGNGDEPVYIIDGY--------SYDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTE-----IFYFCHIHAGMSGRIYIVDAEGDSV---------APPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMR-IERATSASNTVVFMHQMIPHHENAVNMAKILL-QNPGGELE---ED--VSSLLRDIINTQTAQISFMRTFL 743
            G+TY F+Q DASNW+HP+G AY+PDG H         D+V    E +Y IDG            L+ Y+P FFYP   W+   +T +LT+T           I+YFCHIH+ MSG+I+I +A+G  V         +P ++ LY+  V S  D+ CGTF  E Y+        V   +++F+CG    SF+ CM AIDC MN EM  +    SAS    FM QMIPHHENA+N A+I+L Q P  ++    ED  ++ +L  IINTQ+ QI   R +L
Sbjct:  418 GQTYTFDQRDASNWYHPVGLAYYPDGAHGASWGGHERDEVEGAGELLYKIDGAVTTCPDAGDTGLDCYEPEFFYPRAEWMAKTYTAELTITQAMADRSQGGVIYYFCHIHSKMSGKIFIKNADGSDVTRADGSALASPTELPLYSATVASGVDLTCGTFGVEPYSG-----GGVRACNERFLCGALDTSFERCMQAIDCMMNREMTTLTSPDSASKVATFMQQMIPHHENAINAARIVLKQVPMADINAAMEDGGLTDILYGIINTQSYQIHKFRNYL 690
[Close]
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Match: A0A7S0B2P7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B2P7_9DINO)

HSP 1 Score: 176 bits (447), Expect = 7.340e-46
Identity = 111/280 (39.64%), Postives = 151/280 (53.93%), Query Frame = 3 
Query:    3 GETYEFNQLDASNWFHPLGFAYFPDGKHV---GVDQLEDDVGNGDEPVYIIDGY--------SYDLETYQPLFFYPEEVWVQNEFTVQLTVTDPTVTE-----IFYFCHIHAGMSGRIYIVDAEGDSVA---------PPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTFESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIE-RATSASNTVVFMHQMIPHHENAVNMAKILLQNPGGEL--EEDVSSLLRDIINTQTAQISFMRTFLDGTTA 758
            G+TY F+Q D SNW+HP+GFAY+PDG H    G D+ E+    G E +Y IDG            L+ Y+P FFYP   W+   +  +LT+T     +     I+YFC IH+ MSG+I I +A+G  V          P + ELY    +  FD+ CG+   E YA       S+ C D  ++ G     F  CM AIDC+MN +MR+    T  S  V FM Q+IPHH NAVNMAKILL+    E+   +D+  +L  IIN Q  Q+   R +L G++A
Sbjct:   16 GQTYTFDQRDPSNWYHPVGFAYYPDGAHGATWGGDEREEVEAAG-ELLYKIDGSVTTCPDARDTGLDCYKPEFFYPRADWMAKNYAAELTITQAMADKSHGGVIYYFCRIHSKMSGKIIIQNADGSPVTTATGGPLPNPKERELYPVPERGAFDISCGSTGAEAYA----RSASMACKDS-YLRGSLDTDFKKCMRAIDCQMNRQMRVAGHDTHQSAIVTFMQQIIPHHINAVNMAKILLKFAPTEVLAVKDLEDILWSIINEQNYQVHQFRNYLGGSSA 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11607.1038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2I2_9PHAE1.260e-12569.41DUF305 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FP23_ECTSI4.730e-11868.63DUF305 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A0L0GD09_9EUKA3.450e-7150.80DUF305 domain-containing protein n=1 Tax=Sphaerofo... [more]
A0A7R9SV77_9CHLO4.050e-6045.67Hypothetical protein (Fragment) n=1 Tax=Polyblepha... [more]
A0A7S0DZJ1_9EUKA3.140e-4839.16Hypothetical protein (Fragment) n=2 Tax=Phaeocysti... [more]
A0A7S0E333_9EUKA6.850e-4838.49Hypothetical protein (Fragment) n=2 Tax=Phaeocysti... [more]
A0A7S1I2T7_9EUGL7.220e-4840.38Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3PVF0_9STRA1.070e-4740.37Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A813ET61_POLGL4.580e-4640.65Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S0B2P7_9DINO7.340e-4639.64Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11607contigH-paniculata_contig11607:732..7465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue4.9e-55
Seed eggNOG ortholog2880.D7FP23
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF305)
EggNOG OGs2C8JY@1,2S34M@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1995
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11607.1038.1prot_H-paniculata_contig11607.1038.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11607 1375..6240 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928871.2966132-UTR-H-paniculata_contig11607:731..8541622928871.2966132-UTR-H-paniculata_contig11607:731..854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11607 732..854 +
1691480651.48728-UTR-H-paniculata_contig11607:731..8541691480651.48728-UTR-H-paniculata_contig11607:731..854Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11607 732..854 +
1622928871.3188055-UTR-H-paniculata_contig11607:1204..13741622928871.3188055-UTR-H-paniculata_contig11607:1204..1374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11607 1205..1374 +
1691480651.499112-UTR-H-paniculata_contig11607:1204..13741691480651.499112-UTR-H-paniculata_contig11607:1204..1374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11607 1205..1374 +
1622928871.4617772-UTR-H-paniculata_contig11607:6240..74651622928871.4617772-UTR-H-paniculata_contig11607:6240..7465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11607 6241..7465 +
1691480651.543411-UTR-H-paniculata_contig11607:6240..74651691480651.543411-UTR-H-paniculata_contig11607:6240..7465Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11607 6241..7465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928871.3388224-CDS-H-paniculata_contig11607:1374..13851622928871.3388224-CDS-H-paniculata_contig11607:1374..1385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 1375..1385 +
1691480651.506687-CDS-H-paniculata_contig11607:1374..13851691480651.506687-CDS-H-paniculata_contig11607:1374..1385Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 1375..1385 +
1622928871.3636084-CDS-H-paniculata_contig11607:2457..25881622928871.3636084-CDS-H-paniculata_contig11607:2457..2588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 2458..2588 +
1691480651.5137746-CDS-H-paniculata_contig11607:2457..25881691480651.5137746-CDS-H-paniculata_contig11607:2457..2588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 2458..2588 +
1622928871.3860395-CDS-H-paniculata_contig11607:4481..46031622928871.3860395-CDS-H-paniculata_contig11607:4481..4603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 4482..4603 +
1691480651.5209823-CDS-H-paniculata_contig11607:4481..46031691480651.5209823-CDS-H-paniculata_contig11607:4481..4603Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 4482..4603 +
1622928871.4253795-CDS-H-paniculata_contig11607:5217..53341622928871.4253795-CDS-H-paniculata_contig11607:5217..5334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 5218..5334 +
1691480651.5286705-CDS-H-paniculata_contig11607:5217..53341691480651.5286705-CDS-H-paniculata_contig11607:5217..5334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 5218..5334 +
1622928871.4421666-CDS-H-paniculata_contig11607:6144..62401622928871.4421666-CDS-H-paniculata_contig11607:6144..6240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 6145..6240 +
1691480651.5360563-CDS-H-paniculata_contig11607:6144..62401691480651.5360563-CDS-H-paniculata_contig11607:6144..6240Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11607 6145..6240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11607.1038.1

>prot_H-paniculata_contig11607.1038.1 ID=prot_H-paniculata_contig11607.1038.1|Name=mRNA_H-paniculata_contig11607.1038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
MSGRIYIVDAEGDSVAPPQIELYAPLVKSPFDVECGTFLTEDYAPIPGTF
ESVLCPDQQFVCGDPTASFDSCMHAIDCKMNYEMRIERATSASNTVVFMH
QMIPHHENAVNMAKILLQNPGGELEEDVSSLLRDIINTQTAQISFMRTFL
DGTTADLC*
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mRNA from alignment at H-paniculata_contig11607:732..7465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11607.1038.1 ID=mRNA_H-paniculata_contig11607.1038.1|Name=mRNA_H-paniculata_contig11607.1038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6734bp|location=Sequence derived from alignment at H-paniculata_contig11607:732..7465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTGAGACGTACGAGTTCAACCAGCTAGATGCGTCCAACTGGTTTCAT
CCCCTGGGATTCGCCTACTTTCCGGATGGTAAACACGTTGGTGTGGATCA
GCTAGAAGACGACGTCGGAAATGGTGAGAACGCTGGCGAAATGTTGGATA
CATGAGAATTTGGAGCACATAGTGGTTGGTTTCTTCATTGGTCAAATAAT
TCAGTATCACCTGAGAATGAAACTCGATAGAAAAATAATGATTTTGCTCT
GAATAGTCTACTTTTGCATCATCGCATGAGTTTGTTTTCCCCCGAAGAGT
ATCCACATGTCTTGACCTCCGTCGCTAAATGAAGATAACAGTCATTTCGA
AACAGGTTGTTCGGCTCGTTCAGTGAGGGTTGTGGAAGATGACTTCTTGC
CATTGCAGATGATGACTGGTTACTGTTGCTGCTACTGCCGCTGCTGCTTT
TCCCGGTAAAATGACCGCAATAGGTGACGAACCCGTCTACATAATCGATG
GCTATAGCTACGACCTGGAAACGTACCAACCTCTGTTTTTCTACCCCGAA
GAGGTTTGGGTCCAGAATGAATTCACCGTTCAGCTAACGGTTACCGACCC
TACCGTCACCGAGATCTTCTACTTCTGTCACATTCACGCTGGGATGAGCG
GCAGGTATTATATCATGCTTGCCCACCGCTGAGCCGTACCCTACTCATAG
TCAGCACACGTATGTGCCCAACTGACCAGTACATGCCTTAACCATGCGTG
CATGCATGCTCACAGCGGATGTTCACCCTACGCATCGTTAGTATACACAC
GTGACCAGATGGGTATGTACCTCATTGAGAGGATACTGCAACATCCACCC
TGTGGTGAGGTTGACAATGTATATACAACATCCTAATACGTCTTCCGCAC
CTTATCCACCTCACCGCAACGTGGGGGCGTTGTAATATCCGCAGCAAGGT
ACTCATAAGGTACCCTCTGGCCACGTGTGTATGGTCACCTGCGGCTGATT
TTCAAGTACGAGTGTACGAGGCATGACCGCAGGCACATATGCCGAAGAAT
AATCAGACTTGCCCTTGGATCTTAATCCGTTCGTTCATGCGCATATGAAA
TAAACTTCTCGCCTAGTCACGGCAAGCTTGCTGTTCAAAGCTTGGTCATG
ATATCCTCAAGAGGGCGTGAATTTTGCTGGGCATCAACACGGTTTGCCTG
AATCTCGTGGAAATGACCTCCCAGGAATGTCAAGCTGAGTCGAGAATATC
TTACAATTCTGACCCGCTCCGCTGGTATTGGCATTTTTTGCCCAAGCCTG
GGAAATGATCATCAAAATGATCTTTTATGTTCGTGTCTCTACATGTCTTG
CTGGAGTTGTCGTTCGTGAGAGGTGTACATACAATCATACAAGTGTATAT
TCCCGTGTACTGGCCTCATCCCCCCGCCGCCCCCTGACTCTCCACGTCCC
GGGTAAAGGTTAATTGCGCTTGGAAAACGAAAAAGGGCGAAGTTGCATTT
TCCAACCCGACTGTTCGTTTTGTTCAGCACGCACGCCTCGTACACTCCGT
ATTTTCGGACAAAATTGGACGCCAATCAAGAACATGCGGGATTCCGAAGA
GTTTTCAAGATGAGATCGAACACCAATACTGCCTACTGCGATGTCAGGGT
ACTAGTCACAACGGGAATGGCTTGAATCCATCCCTCACTCCACCTCAACC
CACCCTTTTCCCCCACAACCTGCCAGGATCTACATCGTGGACGCGGAGGG
CGACAGCGTGGCGCCACCACAGATTGAGCTGTACGCTCCCCTCGTGAAAA
GCCCCTTTGACGTTGAATGCGGAACCTTCCTTACGGAAGACTATGCCCCG
ATCCCTGGTAAGCCCGAAGTCACCTACCCGCACAAAACCTCTACGATGTC
ATCTTTTCTTGGGTGAAAATCGAACCTATCATCGTACAAAGTGGAGTTTG
GAACCACTGTGACGGCGCGACAATACTTTAGACCCTTTCAAACCCTCTCG
AATCGTACACAACAGCATCGACAAGGGATCTCGCCCTTTTCCCATTCTGA
AGACGGACCTCCACACCTTGAATGGTGCAATTTTTAGGGTAAGAGGGCAC
TCGCGCCGTGTCTGTATCCAGAAACGAAGACTGGCTCAAAAGGTTCAAGA
TGGTTACTTAAATCTATTAGACGTCGAGATACTAGGGGAAGAAAGAATTT
CTAGTACCATTCATTGTACGTGAGATAAATGCACAATAGTTGTGTTGTCC
TGGGCACATGCTATTGACTATCTCATGACGGTGGTTCATACGGCTTGCAA
CATGAGCTGCACAATTTCAGCGTGTTGTGTACATACATCAAACAAGAGAG
TTATAATGCTCACACAATTGAGTTGGTTCGTCGATTTTGTGACATTCGCC
TTCTTGGCTGATAATGGGCCTTGATCCTGTACAGATACCTAAGATGTTGA
GAACGAAAGAAGATGGCCCGAGGACAGGCTGCAGAAGAGCAGCGTGAAGC
ATACACGCATTTATTTGTTAAAGTATAGCTTCGTAGCCAGAGTCAACGAC
CAGTAGTGCGCCAGCGTTGCAGCCTGAAATGCAGTAGCAGCACTGGGTAT
TGAGATAGGAGTTCACTAACCTATCTAGACAGTATTCAGCAGGACGGTCT
TGCTGCAGGCATCACAGCAATAGAAGCTGTTGGTGGAAGTACAGGTATCA
TCTGTCTTTTGGAATTTATAACAACGTCGCTCACAGCAAAAACGTCGGTC
AACTAGTGACGGTTCGACTAAATCAGTTTCTATTGATTTCCTAGCTACAG
TAGCGGGAGTTTGCGGGTGCCTGTTCCTTCCGCTTCCAAGCAATTATCCG
GGTGCTTGTCCTGGATCAATCGAGTGTGGTCTTCCCACCTCAATCACGCT
CTCACAACAACCACCATGACCTCAGCAGCCAGCTGGTCTTTAGTTTGGTT
CATTTTCTTCGTGTAAGTCCTAATTGGTAAAAGGCATACGGTAGTCAAAT
AACTTGTATTTCGAGTGGTTCACACTACATCCTAGCTTCCCAGCTGCCCT
GCGTTTGGCTGCCTCACGAAGCCTACAGCTATTGTTTCACTTGCTAGGAG
TTTAAGTATCGATTATCTATATTCCAGACTTTGTAGCAATGTCGGTCACA
GCAAAAGAGCGGGCCAGTTCGACTAAAAAACAAAGTTCTAATACTTATCT
GGAGGTAGCACAGAGAGGTGGCGCTGGGAAGTAACACCGGGACATTGTAC
CGGGAAGTAGCAGCGGGGTTTAGAAGGGGATTACTTCTTCTCCATGTAAT
TATCCGGGTGCTTGTCCTGGATCTATCGAGTGTGGCTTACCCACCTCATC
ACAGCCAACAAGACATCAGCTCTCAGCTGGTCTCTCGTTCTGTCTTCTTT
TTGTTCAAGTCCTAATTAATAGAAGGCAACTGTAGTTCAATATCTTCTAT
CTTCAATGGGCACACTGCATCCCAGCTTCCCAGCTGTCCCTGCGTTTGGC
TGCCTCACGGAGCCCTTAGCCTTTGTCGTCACTTCCTGGTGTTCTAAAGC
GGATAAACCAATATGGAGTAGACGTGGATTGTCGAGAACGTTTTGAGTAT
ACCCACTCCCCCCCTTCCCCGATTTCTCCAGTAGTATTACCGAGAAACTC
AGATATAATTTATCGTCATCTCCTTGTCCTCCCGTTCCCCCGGCCTTCGC
CCCCTCCCTTCTGGACCTCGCGCACCGCGTGCCCGGTTGTTGACTTCCAG
GAACCTTCGAAAGCGTGCTTTGCCCAGACCAGCAGTTCGTTTGCGGTGAT
CCCACGGCCTCGTTCGACTCATGCATGCACGCGATCGACTGCAAGATGAA
CTATGAGATGCGCATCGAAAGGGTAGGCTTAGTACGAAGTTTTTCTTTGG
TGTGAATTCACCTTGATACTCTGACTGAAGGTAGCTCAACACACCCACGG
ACAGTTTGCGGTTTTATATATCCAGTACCACAGTAGGTCGACGTCCATCT
GAATCGTCTCAAAATGGGGACAGGTGGGGTCAAGCGTTTTTTAGTGTTAA
CTATGCGCTGACACGGCATCTCTTACACGCGGGTATTCTCCTTATGCGAT
TCGCGATTTGGGCTTCGAAATCCCGATCTAATTTGTACTCTGGTTGTGAT
ACCAACAGCAATTCCGCTGCTGCATACCTTTTATAGCAGCTGTAATAGAG
TAGAACAGCTACCAGTGGTCCAGTCATTGGCTTCGACCCCTTCGCGACCT
GCAAGCAGGCCACTAACCCGCCTCGCCTGCTCGCCGTCCTCCGTCCGCCC
TGTATCCTACCCATCCCCACTCTACCACCCCCTCTACAACCATGTTCGCA
ATTTTAGCACTACGTAGGGATGATCATGTTCCCCTTTTCGGTGAAGGTAC
AGACTCGATGGCAATCGCAAACAAGGTTCAAACGCCACGTTTGATCCTTG
CTGATTGGCTGTCTGCGGTCGAATGTCAAACCACAGGCAACCTCGGCGAG
CAACACGGTGGTGTTCATGCATCAGATGATCCCGCACCATGAGAATGCCG
TAAACATGGCCAAGATCCTGTTGCAGAACCCCGGAGGGGAGCTAGAGGAA
GATGTGAGAATGATGAGCCGCTTGTGATCGGTCCACGCCATAAACGTGCA
CACATCACGATAACATGATGAATCACGGTGAAATGAGTTGACACAGCAGA
TTTCCGATGAGAGTTTTTCTCTCGAAGTGGAGGATTGCACAGAACCAAAC
ATGTGTTGTGAACAGTCGAAGCCATGAGTATAAAACTATGCATGTTCATA
CATCACGATGACATGATACATTACGGTGAAGAAAATTGACACGTTCAGAT
TCCCGATGAGTGTTCTTCTCTTGGGGCAAAGGATTGAATAGGACTAAACA
CGTGTGTTGTGGATGGGCGTCGCTGTGAGTCTAGAACTGCTGGTCAAGTA
CTGGTCGACCAATTCTGTCCAGGGTACCGGCGCCACTACAGGATAGTGGC
ATCCAGTGTTGAATTTGCGGCGATACTTTCATGATCAGGAAAGACTCATG
TCAATTCCACACGCCAACAGGTCCGCATAACACCTTGAGCTTGACCCAAG
GAAGAAATAACAGTGTGATGAATTACACGTGAGAAGTGAAATGTGTGGGT
TTTCACCCATATCCTAAACATATGGTACTTCAAAAATGTTGTATGATATA
CTCTAATACCGATGACACTACGATAGATCATCCAAATATCCTCTTACATG
ATCCTTTACTGAATAACAGACTTATCCAACCAACACCCAGTTGTTGTTCG
CCCTGTAGTAGTATAAATCAGATCGCCTCCTGTAAACGCCTTGGCGATCG
TGTTAAAAGTAATGGCGATAACCGAGTACCTTTTCTTGCCGCTTCTCGTC
TCGTGGCCGGTAGGTGTCCTCGTTGCTGAGGGACATCATCAACACTCAAA
CTGCTCAGATAAGCTTCATGAGGACTTTCCTCGACGGCACCACCGCAGAC
CTCTGTTGAATGGTCCAATATTCCTATTTCTTTTCATCCAAATATGTGAT
GTATGTTCCGTGCTTGGGTTCTCGGTGTTGAGTTTTGGTTTACCTGTCGG
GTGGGTCAAAGCGAAGTAGATATATCACGCTGTGTTACTAGTGACGCCCT
GGACAACGACAAACCAGCGGCAGAGGTACTGAGGAAATCAAGACTAGCAT
TTGTGTCCTGTAATTGGGGATGTGGTACACACGTACAGGTAAGGAAACAC
ATGTAGATTAGCGGGAAGCTCAACCCGACCACCCCTTCAGCTGCGGGTGA
TCGCCTACTGTGTACGGTTGACTGGGTAGTCTCTCTTTGTGGCTCTCGAG
AAGGTTGTTCTCGTTCGTTTTCCTTGTACCGAACTTTGTAAACCTTCTTG
CCAATATTAATAGTTATTCTTTCTAATCATGATTGTTAGAAACTAGAAAG
CAGCCGGTATAAACATTGTAAAATCTACTGTTGATGGCGAACACACCGTA
CCAGATAGTGTGTTCTTCTGCTTCTATAATTTTGGTTGGCTTTCGACGGG
TTTTCGCTTCGTTTTTCCCAGTATACAACTTTCGAACGTGTTTCTTTCCG
GGCTATTGTAAGGTTTTTCGTCTAGCAGGCGTTTTCCTGGAGGCGGTACT
AGTAATGTGATAAAACTCTTGGCAATGCTTGTTTACAGCCAGCTGGACGT
GTAGACAGCGACCGCGACCGTGTTATTGCTGATCATTACACATATTTAGG
AAGGTGCGTTGTTCCAGTATGCGCACTTTTTCCTCGATTGGATTTACCCA
TTGATGACTGGATTTATCCATTGATAGCTTGTGAACGCTTCTTCCCTACT
ATTGGGGTGAGGTCGCTCTTTTGGGTATACATTAGGTACGTTTCTCACCT
ATGGTAGCTCGTGTGTGTGTTACATTTGTGGGTGTATGAGTCTGGACGCA
TTTTTCTGACGGGCTCTTGAGCGGTGTGCGGGCGCCTACGTCAAAATAGG
GGTTAAGCCATGTCATGTTCATGTGAGACATATAGGATCCTGTGGGTGGC
GTAGTATAGCGAGTGACTCACATATGTATCCACATGAGAAAGGATACACA
TAATGCGGGATTTGGGGTGGGAACGTTGAAACCATAGATGTAAACGTCCC
TTACCAGGGATAGTTGTCAAGAGAAAATATCTAGACTATGCAGAGGGATC
CACATCAACATATTTTTACTTGTCTTTATGTATC
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Coding sequence (CDS) from alignment at H-paniculata_contig11607:732..7465+

>mRNA_H-paniculata_contig11607.1038.1 ID=mRNA_H-paniculata_contig11607.1038.1|Name=mRNA_H-paniculata_contig11607.1038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig11607:732..7465+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGGCAGATGAGCGGCAGGATCTACATCGTGGACGCGGAGGGCGAC
AGCGTGGCGCCACCACAGATTGAGCTGTACGCTCCCCTCGTGAAAAGCCC
CTTTGACGTTGAATGCGGAACCTTCCTTACGGAAGACTATGCCCCGATCC
CTGGATCTACATCGTGGACGCGGAGGGCGACAGCGTGGCGCCACCACAGA
TTGAGCTGTACGCTCCCCTCGTGAAAAGCCCCTTTGACGTTGAATGCGGA
ACCTTCCTTACGGAAGACTATGCCCCGATCCCTGGAACCTTCGAAAGCGT
GCTTTGCCCAGACCAGCAGTTCGTTTGCGGTGATCCCACGGCCTCGTTCG
ACTCATGCATGCACGCGATCGACTGCAAGATGAACTATGAGATGCGCATC
GAAAGGGAACCTTCGAAAGCGTGCTTTGCCCAGACCAGCAGTTCGTTTGC
GGTGATCCCACGGCCTCGTTCGACTCATGCATGCACGCGATCGACTGCAA
GATGAACTATGAGATGCGCATCGAAAGGGCAACCTCGGCGAGCAACACGG
TGGTGTTCATGCATCAGATGATCCCGCACCATGAGAATGCCGTAAACATG
GCCAAGATCCTGTTGCAGAACCCCGGAGGGGAGCTAGAGGAAGATGCAAC
CTCGGCGAGCAACACGGTGGTGTTCATGCATCAGATGATCCCGCACCATG
AGAATGCCGTAAACATGGCCAAGATCCTGTTGCAGAACCCCGGAGGGGAG
CTAGAGGAAGATGTGTCCTCGTTGCTGAGGGACATCATCAACACTCAAAC
TGCTCAGATAAGCTTCATGAGGACTTTCCTCGACGGCACCACCGCAGACC
TCTGTTGAGTGTCCTCGTTGCTGAGGGACATCATCAACACTCAAACTGCT
CAGATAAGCTTCATGAGGACTTTCCTCGACGGCACCACCGCAGACCTCTG
TTGA
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