mRNA_H-paniculata_contig11605.1037.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11605.1037.1
Unique NamemRNA_H-paniculata_contig11605.1037.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11605.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11605contigH-paniculata_contig11605:5933..6538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size607
Cds size606
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928871.2462118-CDS-H-paniculata_contig11605:5932..65381622928871.2462118-CDS-H-paniculata_contig11605:5932..6538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11605 5933..6538 +
1691480651.4761107-CDS-H-paniculata_contig11605:5932..65381691480651.4761107-CDS-H-paniculata_contig11605:5932..6538Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11605 5933..6538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11605.1037.1prot_H-paniculata_contig11605.1037.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11605 5933..6538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11605.1037.1

>prot_H-paniculata_contig11605.1037.1 ID=prot_H-paniculata_contig11605.1037.1|Name=mRNA_H-paniculata_contig11605.1037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
LVLPLFYLSTTTTCRSITSPAPSTAVFSDFCRSVQHVIESSLIPSSDRGS
NADDNGAIRCSLWLSTKRARAAAIDHGENGQIGRAPASPALNPSTSSSTL
ATRAAAAFTPASSYFTGSMPYDPGTPSSTPDSPLYPPTTRRDIPPGFPTN
PVIMTITPDAPPSSLPRERPTPPHFDGQAESRERVEQSLPRHTLEGGSRR
I*
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mRNA from alignment at H-paniculata_contig11605:5933..6538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11605.1037.1 ID=mRNA_H-paniculata_contig11605.1037.1|Name=mRNA_H-paniculata_contig11605.1037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=606bp|location=Sequence derived from alignment at H-paniculata_contig11605:5933..6538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTCCTCCCTCTCTTCTACCTTTCTACAACAACTACATGCCGATCGAT
CACGTCTCCTGCGCCTTCGACTGCTGTTTTCTCCGATTTCTGTCGATCTG
TTCAGCACGTTATCGAGTCGTCTCTTATTCCCTCGTCCGACCGCGGTAGC
AACGCGGACGACAACGGTGCCATCCGCTGCTCGCTCTGGCTGTCGACCAA
GCGGGCACGGGCGGCGGCCATCGACCATGGCGAGAATGGTCAGATCGGCC
GTGCTCCAGCGTCTCCTGCTCTCAATCCGTCTACTTCCAGTTCTACGCTG
GCTACCAGGGCTGCTGCGGCATTTACTCCAGCGTCTTCGTACTTTACAGG
ATCTATGCCGTACGATCCGGGTACTCCCAGCTCCACTCCGGATTCTCCGC
TCTATCCTCCCACAACTCGCCGCGACATACCACCGGGTTTTCCGACTAAT
CCGGTTATAATGACCATCACTCCGGATGCACCGCCCTCCTCGCTTCCCAG
GGAGAGGCCGACTCCTCCTCACTTCGACGGACAGGCGGAATCGAGGGAGA
GGGTGGAGCAGTCGCTCCCGCGCCATACTTTGGAGGGTGGAAGTCGACGA
ATCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11605:5933..6538+

>mRNA_H-paniculata_contig11605.1037.1 ID=mRNA_H-paniculata_contig11605.1037.1|Name=mRNA_H-paniculata_contig11605.1037.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig11605:5933..6538+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTCCTCCCTCTCTTCTACCTTTCTACAACAACTACATGCCGATCGAT
CACGTCTCCTGCGCCTTCGACTGCTGTTTTCTCCGATTTCTGTCGATCTG
TTCAGCACGTTATCGAGTCGTCTCTTATTCCCTCGTCCGACCGCGGTAGC
AACGCGGACGACAACGGTGCCATCCGCTGCTCGCTCTGGCTGTCGACCAA
GCGGGCACGGGCGGCGGCCATCGACCATGGCGAGAATGGTCAGATCGGCC
GTGCTCCAGCGTCTCCTGCTCTCAATCCGTCTACTTCCAGTTCTACGCTG
GCTACCAGGGCTGCTGCGGCATTTACTCCAGCGTCTTCGTACTTTACAGG
ATCTATGCCGTACGATCCGGGTACTCCCAGCTCCACTCCGGATTCTCCGC
TCTATCCTCCCACAACTCGCCGCGACATACCACCGGGTTTTCCGACTAAT
CCGGTTATAATGACCATCACTCCGGATGCACCGCCCTCCTCGCTTCCCAG
GGAGAGGCCGACTCCTCCTCACTTCGACGGACAGGCGGAATCGAGGGAGA
GGGTGGAGCAGTCGCTCCCGCGCCATACTTTGGAGGGTGGAAGTCGACGA
ATCTAGCTCGTCCTCCCTCTCTTCTACCTTTCTACAACAACTACATGCCG
ATCGATCACGTCTCCTGCGCCTTCGACTGCTGTTTTCTCCGATTTCTGTC
GATCTGTTCAGCACGTTATCGAGTCGTCTCTTATTCCCTCGTCCGACCGC
GGTAGCAACGCGGACGACAACGGTGCCATCCGCTGCTCGCTCTGGCTGTC
GACCAAGCGGGCACGGGCGGCGGCCATCGACCATGGCGAGAATGGTCAGA
TCGGCCGTGCTCCAGCGTCTCCTGCTCTCAATCCGTCTACTTCCAGTTCT
ACGCTGGCTACCAGGGCTGCTGCGGCATTTACTCCAGCGTCTTCGTACTT
TACAGGATCTATGCCGTACGATCCGGGTACTCCCAGCTCCACTCCGGATT
CTCCGCTCTATCCTCCCACAACTCGCCGCGACATACCACCGGGTTTTCCG
ACTAATCCGGTTATAATGACCATCACTCCGGATGCACCGCCCTCCTCGCT
TCCCAGGGAGAGGCCGACTCCTCCTCACTTCGACGGACAGGCGGAATCGA
GGGAGAGGGTGGAGCAGTCGCTCCCGCGCCATACTTTGGAGGGTGGAAGT
CGACGAATCTAG
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