mRNA_H-paniculata_contig11602.1036.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11602.1036.1
Unique NamemRNA_H-paniculata_contig11602.1036.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI)

HSP 1 Score: 363 bits (931), Expect = 1.820e-116
Identity = 166/208 (79.81%), Postives = 181/208 (87.02%), Query Frame = 1 
Query:    1 QIACGGYHSAVVTDAGRVFAWGFNRYGQCGNGSKDNTVPEPAPVDLSDLSPVGLGSSAQVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALPKGLSVVDPGPA 624
            Q+ACGGYHSAV TDAGRVF WGFNRYGQCGNGSKDNTVPEP+ VDLS ++P  +G   +V+CGRHHSAL+T  GALYTWGACSFGKLG  D EKTVC PQEVTFFSD PL QA+AGDFHMVALSR+  VFSWGYGAEGQGGHGSLLHMR PRRV+SLQ+VP+ QVVCG WWSMAITVDGYCY+WG ADGGWTGL  P GL VVDPGP+
Sbjct:  154 QVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGKLGLQDAEKTVCIPQEVTFFSDKPLVQAAAGDFHMVALSRKREVFSWGYGAEGQGGHGSLLHMRMPRRVSSLQEVPVAQVVCGPWWSMAITVDGYCYAWGSADGGWTGLTRPPGLRVVDPGPS 361
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.210e-63
Identity = 107/211 (50.71%), Postives = 129/211 (61.14%), Query Frame = 1 
Query:    1 QIACGGYHSAVVTDAGRVFAWGFNRYGQCGNGS-KDNTVPEPAPVDLSDLSPVGLGSSAQVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQA--SAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALPKG-LSVVDPGP 621
             +A GGYHS  VT AGR FAWGFNRYGQCG G   D  V EP  V L +L   G G  A   CGRHH   +   G +Y WGA  FG+LG +DP K    P EV       + +   + G++H +A + R AV+SWGYG +GQ GHG   H+RTPR V  L+  P+ QV CG  WSMA+T  G+ Y+WGCADGGWTGL  P G L  V+PGP
Sbjct:   61 SVAAGGYHSVAVTRAGRGFAWGFNRYGQCGVGDCADAVVSEPRAVALRELRARGEGVRAAA-CGRHHCVAVGTGGGVYAWGAGGFGRLGVADPPKVAPYPVEVGALRGQRVAEVRVACGEYHNLARTERGAVYSWGYGLDGQCGHGGAQHLRTPRIVERLKGNPVVQVACGSLWSMAVTSTGHLYAWGCADGGWTGLQCPPGVLRCVEPGP 270
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: K8Z8W0_NANGC (Hect domain and rld 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8W0_NANGC)

HSP 1 Score: 209 bits (531), Expect = 1.470e-61
Identity = 102/208 (49.04%), Postives = 131/208 (62.98%), Query Frame = 1 
Query:    4 IACGGYHSAVVTDAGRVFAWGFNRYGQCGNGSKDNTVPEPAPVDLSDLSPVGLGSSA--QVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALPKGLSVVDPGP 621
            +ACGG HSAV T    VF +GFNRYGQ G G   N +  P PV++S     G+GSS   Q++CGRHH+++LT  G +++WGA SFG+LG  DP+K V  P EV  F   PL   + GDFH++ L      ++WGYG+EGQGG G+ LH+RTPR V  L+   I Q+ CG WWSM +T  G  Y+WG  DGGW GL     L  V+P P
Sbjct:  232 VACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMS-----GIGSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGRLYTWGYGDGGWLGLERASKLPYVEPCP 434
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: W7U0Q3_9STRA (Putative e3 ubiquitin-protein ligase herc4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Q3_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.380e-61
Identity = 102/208 (49.04%), Postives = 131/208 (62.98%), Query Frame = 1 
Query:    4 IACGGYHSAVVTDAGRVFAWGFNRYGQCGNGSKDNTVPEPAPVDLSDLSPVGLGSSA--QVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALPKGLSVVDPGP 621
            +ACGG HSAV T    VF +GFNRYGQ G G   N +  P PV++S     G+GSS   Q++CGRHH+++LT  G +++WGA SFG+LG  DP+K V  P EV  F   PL   + GDFH++ L      ++WGYG+EGQGG G+ LH+RTPR V  L+   I Q+ CG WWSM +T  G  Y+WG  DGGW GL     L  V+P P
Sbjct:  186 VACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMS-----GIGSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGRLYTWGYGDGGWLGLERASKLPYVEPCP 388
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: A0A4D9DAH8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAH8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 5.340e-58
Identity = 102/223 (45.74%), Postives = 131/223 (58.74%), Query Frame = 1 
Query:    4 IACGGYHSAVVTDAGRVFAWGFNRYGQCGNGSKDNTVPEPAPVDLSDLSPVGLGSSA--QVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYC---------------YSWGCADGGWTGLALPKGLSVVDPGP 621
            +ACGG HSAV T    VF +GFNRYGQ G G   N +  P PV++S     G+GSS   Q++CGRHH+++LT  G +++WGA SFG+LG  DP+K V  P EV  F   PL   + GDFH++ L      ++WGYG+EGQGG G+ LH+RTPR V  L+   I Q+ CG WWSM +T  G                 Y+WG  DGGW GL     L  V+P P
Sbjct:  102 VACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMS-----GIGSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGRLGLPDPKKIVGLPTEVPAFRCCPLAALACGDFHVLGLGVDGRAYAWGYGSEGQGGLGATLHLRTPRPVEGLEGSRIAQIACGAWWSMVVTEAGCVGGKGRGGWRGVLVRLYTWGYGDGGWLGLERASKLPYVEPCP 319
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.050e-53
Identity = 86/180 (47.78%), Postives = 118/180 (65.56%), Query Frame = 1 
Query:    1 QIACGGYHSAVVTDAGRVFAWGFNRYGQCGNG----SKDNTVPEPAPVDLSDLSPVGLGSSAQVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAIT 528
             +ACGG HS V+TD+GRVF WG NR GQCG G     K ++V EP PVD S L+  G      ++ GR+HSA+L+ +G ++TWG   FG+LG +D +KT   P EV  FS NP+   SAGDFHM+AL++   V+SWGYG +GQ GH  +L++R PRR++    + I  V CG  +S+ +T
Sbjct:   37 NVACGGSHSGVITDSGRVFMWGLNRSGQCGQGLSAKGKSDSVLEPRPVDFSHLANHGTLGVKSLVLGRNHSAMLSTTGRVFTWGEAGFGRLGLNDVKKTQLIPAEVMAFSKNPVVTLSAGDFHMLALTQDGQVYSWGYGVDGQTGHCVMLNVRCPRRIDFFDTMHIRDVCCGAGYSLVLT 216
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: A0A812WWZ6_SYMMI (Rcbtb2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WWZ6_SYMMI)

HSP 1 Score: 172 bits (435), Expect = 3.440e-50
Identity = 86/185 (46.49%), Postives = 115/185 (62.16%), Query Frame = 1 
Query:   61 WGFNRYGQCGNGSKDNTVPEPAPVDLSDLSPVGLGSSAQVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRR-VNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALPKGLSVVD 612
            WG NR GQ G G K  ++ EP PVD +D+   G    +Q++CGR+H+ LLT  G +Y+WGA  FG+LG  D  K   TP+EV  F +   +  +AGDFH +A+    AVFSWGYG EGQ G+GS +++RTPR+ V   +DV I  + CG  WS A+T  G  Y+WG  DGGW G+  P  L  V+
Sbjct:    2 WGLNRNGQTGTGVKAESILEPRPVDRTDI---GRKVPSQLVCGRNHTCLLTTEGRVYSWGAAGFGRLGVMDSRKIQHTPREVQQFRNITCQYIAAGDFHTLAIDSEGAVFSWGYGLEGQCGNGSTMNVRTPRQIVFPDEDVEIQDLTCGSSWSFALTTTGALYTWGYGDGGWLGICPPAELPYVE 183
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: A0A7S2G301_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G301_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.740e-40
Identity = 70/144 (48.61%), Postives = 94/144 (65.28%), Query Frame = 1 
Query:  181 ICGRHHSALLTGSGALYTWGACSFGKLG------QSDPEKTVC-TPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALP 591
            +CGRHHSALLT  G++Y+WGA SFG+LG       S P  T   TP+ +       +++ +AGD HM+AL+R   VFSWGY AEGQ GHG+ LH RTPR + +L+ V +T++ CG W+S  I+ +G  Y+WG  DGGW G   P
Sbjct:    1 VCGRHHSALLTDRGSVYSWGATSFGRLGIHFEQTASAPYPTKQRTPRLIQSLERFAVRRIAAGDLHMLALTRDRRVFSWGYSAEGQCGHGTWLHGRTPRPIEALRHVLVTKIACGAWFSAVISAEGDLYTWGYGDGGWLGQGAP 144
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: A0A7S1CDT0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDT0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.390e-29
Identity = 76/198 (38.38%), Postives = 104/198 (52.53%), Query Frame = 1 
Query:    1 QIACGGYHSAVVTDAGRVFAWGFNRYGQCGNGSK-DNTVPEPAPVDLSDLSPVGLGSSAQVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALP 591
            Q++ G  HSA +T+AG+VF WG+   G+ G+G + D  VP+   V L+D   V      QV+CG  H+A LT  G L+TWG    G+LG    E     P+ V F     + Q + G  H  AL+    V +WG GA G+ GHG  L    P  V SL   P+ QV+CG   S A++ DG  ++WG  D G  G  +P
Sbjct:  246 QLSLGTSHSAALTEAGKVFTWGYGGDGRLGHGDQSDMLVPKALDV-LADEHVV------QVVCGELHTAALTDDGRLFTWGLGKDGRLGLGTTESHH-VPRAVEFSRGVAITQVACGGLHTAALTSDGQVLTWGLGASGRLGHGDELDQMVPTLVRSLAGTPMQQVLCGGHHSAALSGDGRVFTWGFDDDGRLGHGVP 435
[Close]
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Match: A0A0G4FC04_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FC04_VITBC)

HSP 1 Score: 123 bits (308), Expect = 6.870e-29
Identity = 78/225 (34.67%), Postives = 103/225 (45.78%), Query Frame = 1 
Query:    1 QIACGGYHSAVVTDAGRVFAWGFNRYGQCGNGSKDNTVPEPAPVDLSDLSPVGLGSSAQVICGRHHSALLTGSGALYTWGACSFGKLGQSDPE-KTVCTPQEVTFFSDNPLKQASAGDFHMVALSRRMA-------------------VFSWGYGAEGQGGHGSLLHMRTPRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALPKGLSVVDP 615
             +ACGG+HSA V ++G V+ WG  R GQ G G   + +    P  +  L    +    QV CG HHSA +T SG LYTWG    G+LG    E + +  P+ V   S   + Q S GDFH   L    A                   V++WG G  G+ GHG       P  V  L  V +TQV CG   + A+T  G  Y+WG   G +  L     L+V+ P
Sbjct:   49 SVACGGHHSAAVGESGEVYVWGGGRRGQLGTGDTKDVI---LPKAIRSLQSKAI---RQVACGEHHSAAVTESGVLYTWGLPRNGRLGHGREEGEMLLVPKVVEALSGQQVVQVSCGDFHTACLVNATAAQQTSATAAAAGGTPQPTSVYTWGMGLSGRLGHGDETDRYVPTSVEGLAVVQVTQVCCGGHHTAAVTESGQMYTWG--GGAFGKLGHGSRLAVMTP 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11602.1036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKE1_ECTSI1.820e-11679.81Similar to retinitis pigmentosa GTPase regulator n... [more]
A0A835Z434_9STRA1.210e-6350.71Regulator of chromosome condensation 1/beta-lactam... [more]
K8Z8W0_NANGC1.470e-6149.04Hect domain and rld 4 (Fragment) n=1 Tax=Nannochlo... [more]
W7U0Q3_9STRA2.380e-6149.04Putative e3 ubiquitin-protein ligase herc4 n=1 Tax... [more]
A0A4D9DAH8_9STRA5.340e-5845.74Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3GVQ9_9STRA4.050e-5347.78Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A812WWZ6_SYMMI3.440e-5046.49Rcbtb2 protein (Fragment) n=1 Tax=Symbiodinium mic... [more]
A0A7S2G301_9STRA4.740e-4048.61Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1CDT0_9STRA1.390e-2938.38Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0G4FC04_VITBC6.870e-2934.67Uncharacterized protein n=4 Tax=Vitrella brassicaf... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11602contigH-paniculata_contig11602:581..7569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.4
Seed ortholog evalue3.6e-98
Seed eggNOG ortholog2880.D8LKE1
KEGG koko:K04575
KEGG Pathwayko05014,map05014
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-16_002650.1
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons5
Model size624
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11602.1036.1prot_H-paniculata_contig11602.1036.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11602 581..7569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928871.122651-CDS-H-paniculata_contig11602:580..7571622928871.122651-CDS-H-paniculata_contig11602:580..757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 581..757 +
1691480651.425858-CDS-H-paniculata_contig11602:580..7571691480651.425858-CDS-H-paniculata_contig11602:580..757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 581..757 +
1622928871.1353698-CDS-H-paniculata_contig11602:3206..32871622928871.1353698-CDS-H-paniculata_contig11602:3206..3287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 3207..3287 +
1691480651.4380374-CDS-H-paniculata_contig11602:3206..32871691480651.4380374-CDS-H-paniculata_contig11602:3206..3287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 3207..3287 +
1622928871.1500585-CDS-H-paniculata_contig11602:4275..43631622928871.1500585-CDS-H-paniculata_contig11602:4275..4363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 4276..4363 +
1691480651.4474435-CDS-H-paniculata_contig11602:4275..43631691480651.4474435-CDS-H-paniculata_contig11602:4275..4363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 4276..4363 +
1622928871.1626878-CDS-H-paniculata_contig11602:4965..51111622928871.1626878-CDS-H-paniculata_contig11602:4965..5111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 4966..5111 +
1691480651.4569075-CDS-H-paniculata_contig11602:4965..51111691480651.4569075-CDS-H-paniculata_contig11602:4965..5111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 4966..5111 +
1622928871.1911993-CDS-H-paniculata_contig11602:7437..75691622928871.1911993-CDS-H-paniculata_contig11602:7437..7569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 7438..7569 +
1691480651.466452-CDS-H-paniculata_contig11602:7437..75691691480651.466452-CDS-H-paniculata_contig11602:7437..7569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11602 7438..7569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11602.1036.1

>prot_H-paniculata_contig11602.1036.1 ID=prot_H-paniculata_contig11602.1036.1|Name=mRNA_H-paniculata_contig11602.1036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
QIACGGYHSAVVTDAGRVFAWGFNRYGQCGNGSKDNTVPEPAPVDLSDLS
PVGLGSSAQVICGRHHSALLTGSGALYTWGACSFGKLGQSDPEKTVCTPQ
EVTFFSDNPLKQASAGDFHMVALSRRMAVFSWGYGAEGQGGHGSLLHMRT
PRRVNSLQDVPITQVVCGRWWSMAITVDGYCYSWGCADGGWTGLALPKGL
SVVDPGPA
back to top

mRNA from alignment at H-paniculata_contig11602:581..7569+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11602.1036.1 ID=mRNA_H-paniculata_contig11602.1036.1|Name=mRNA_H-paniculata_contig11602.1036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6989bp|location=Sequence derived from alignment at H-paniculata_contig11602:581..7569+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCGCATGCGGAGGCTACCATTCCGCCGTTGTGACGGATGCAGGCAG
GGTGTTCGCGTGGGGCTTCAACCGGTACGGGCAGTGTGGAAATGGAAGCA
AGGATAACACCGTGCCGGAGCCGGCGCCAGTGGATCTATCCGATCTTTCT
CCCGTTGGACTGGGCTCTTCTGCACAGGTGCAGGCTTAGGTGAAGGGGGA
GGATACGGCGGGGTGTATCGTAGGCAGACAAAATTAGCCGTGCTTCCGTT
CGTTCAAGGAGTTCCTCACAAAATCCTACAGCAGGTGAAAAATTGGATGC
GAGAGCGCTGCTTTTTCATTCCGAACCCGCGAGTATAGCGGGAGCGCTGC
TTTCTCACTCCAAGCCAAGAGTATTTAGTATATAGCACCTGGCCCGATAA
GACATGGCCTTACTTGACGTGGTTCGGGAAGCACCTTGACCCCCATTGAC
TACTACAAAACTGACGTATAGTGCAGCTTACTTGGTGATGGACGTGTAGA
AGAAACGCTTAGTGTCCACGTTACTACACTCTATCGAAATACTGGAGGGC
ACCAACTGCCGTAACGTGCATGCAGTGTGGCGTACTGCCCAACCGAGCAT
GGATTGTAGCTCTGATGCTTATCTAATAGCTCCGTTGTACGTTTGTTTAT
GTTTAGCAGCTGACTTCACACTTGATATGTTTACCGACGCCGGGATTCTA
TCTGTGCTTGTGCTACATTTCCGTATTCGTGTCCCAGTGGGGGGAACTCT
AGTTGGTTACACTTATTGGCAAAAATAGATCATGACCAATAGGGGGGGGG
GGGGTTCTCATGTTTTGCATGCCGTAGTTGCTGGACCATTAACCGGAGAA
CGAAGGTTTGTTCCTATTAGAGTGATTTTCGATGGTCAGTTGCTCTTTCC
CACCGTTGAGAAAATCTCGGAGAGGAGGGGGATGGGGTGTGATGAGATCA
GCAAAATCATTAAATAATAATAATAATAATAATAATAACGGCGTGACGGG
ACGAGCACTCTCAATAGCCCGTTAGGGACCAGTGATCCCCTAAATCAGCT
GTAGCTGTGCGGGATGGTTCATGACTTGGTCGTTACGCAAGAAGCTGGGC
GTGTGTATGTTCTCGGTTTACCCTTAACGTGAGGTAACGCCTCAATCGTC
TGGAGAACAAGTGATGCCCTTATTGATGTCATTTTGTTGATTTGTGTACA
GTATACAAGTGGAGATTGAAGTCAGCTACATAACATTAACATGGGTACAA
TGGAGTTGTAATATTAGTATGAGCTTTTAGAGTTAGAGTATAACTGACTG
TGTGGTAGGGGGTGGTTTTACTACAATAATGAGCGTTTCAGTTAGCAAAA
AATGGAGGGTTGTATTCAAGTTTTATGGTTGTATGAGAAGACTATTTCAG
GTGTCACCTACAGTATACTACACGCATGTGCGAGTGATTCAGTGATATTC
CCTCGTGAAGATTGCCGTAGTCCACGTCGTGCGTGTTCGAAGAGGCGCGA
GAAGTTCCGGTACTTGGGTCATGATGGAGGTCACAACTTTGGTCATGTAA
ACAGGATCCTTGCTCTCCCATGGTACCGGAGAGCCGCTGACCAGCTGTCG
AGAGCTGCTAAAGTATTCTGTGGATGTATTCGTAGTTTTTTATGCACGAC
TGGTGGAGGGGAAATCTTTGCTTTGATATTGACGAGGTCCGGTTCCTCAA
GAGTAGATGAACTACTCCCTGAAACGTGCCGCCTCACGTTTGGGATATTT
ATTGTACAGTAGAGTATTAGTTAGTATTTATTTATTTGTGCAGGAGCCAG
AGTTAATCGTGAATCAAGTATATTGTTTTTCATGTATACATTGCAAGTAA
TTCATTGATATATATATATATATGGTGATCCAGTTGAGGTCACACGATAG
ATTAATAAAAAAAAAAATCACAATTGCCAATTTGTTAACCTTCTTCTGAG
TATTGTCACATGTCGAATCAATCCGTTATTTTTATAGAAGTATCGTTGGG
TTTATTATATATATATATATATATATTGATATTGATATTGATATTGGCGC
TCTGAGAGGCCATAGATTTGCGGTTTTCACCCTCATATTAATGTACAGCA
TTTTTCGTGACATGGTTGGTGCAGGTAACATGTACCCCTATTTGTGTGCG
TATTTTGTGTGTACGTACATTCGCCTGTTTAGTTGTTGATATGGGTGGCT
CGGGATGAAATTTCGTGTCTTGTGGTCTTTGGCAAGATACGTGTTCCTTT
GGTGGTACTAACTACTGTGTTGCGCACGATACATATTTGCTTTTTTTTTT
TTGGTACAGCAATACCTTTGGCACACCGTGCTAACCAGGAAACTTCCCCT
CTACGATGCTTGCGTGATGGTGGAGTGTGAGCGTTAGGGCAAATGCCGAC
GGAAAACGCTGCGAATCTGCGCTGTCCTCGAGCCAAGAATCGGGAGCAAA
TAATCGATTCCCGGCAAATTATTTCTGACCGAGTTCTCGGGCGACGGGGG
GTGGATCTGTGATCGGTGTTTTTGTCGACCTGTCACCCTTGCTGTCTTTT
GCTTTTGCTTTTGCTTTCGCCTCTTGCTTGCATATTGTGTGCTGACTCTA
TGGATACGCCTGTTGTGTTTTTTAAGGTGATCTGTGGACGTCATCACAGT
GCCCTTCTCACCGGGTCGGGGGCCTTATACACCTGGGGAGCATGTAGTTT
TGGCAAGGTACGTGACAGAAAGAGAGTCAGACAGTGATGAATGTGTACGG
AGAAGCGTTCAATGCAGAGAGGTTCTTCTGTAGAATGTAGCAGGAAAAGT
TTTCAACCATCGGACAAACACGCATGCTTGGCCATATTCGTCACGAAAAT
TAAAAAAAAAACAAAAAAAACATTCACTTGAGTTTCAAAATGAGCTAGCT
CTCGGGTATTATTCTATGTGCACCGGACCATCGACGACTGGTGATTATAT
TCGTAATTCGGATGGATAAGGGATGGGCACTTTTTTATTCATGTGTCCGC
TCATTCTGAAACTCGGGTGAATACTTCTTTTTCTTTTTTTTCGTGACGAA
TACGCCAAGTATTCGTCGTTGTCCAGGGGGTAAAAGGTTTAAAGGTCTTG
CCTTGGTCTCTTGAGGATAAGAGAAAACATGTAGAAGATGACCATGTGCA
TAGATTATAAGGGAGACAGGAAGAGAGAGAGAGAGAGAGAGAGAGCGAGG
TAAATCGGGACTTTGTGTTTCCGTCCCTTCCCCCCGCCCGCCCCCCCCCC
CCAAAAATAAATAAATAATAAATAAATGAAATAAAACGATTGTCTTACTT
ACTTCCCCCCCTCCCCCCCTGAATCTCAATGAATGAGCACCCTGCTTCCT
TGGTCTGGTTTTGTGTGCTGCGGCGTTCACTGTCGTGCGGCTCGGATTTT
TTTATTTTTATTTTTGTCCGAATCATTCTGTTTCTTCGCGTGTGGTGGTT
TTGGTTTATAACGTTGGAGGTTGACCCCCCTTTTTCTTTTTTTCCATCTA
TTTGTGTAAAATGAAGGTATCAATCCCATTTCGATTATGTCTAATAACAA
TAACAACAACAACGACAACAACTGCAAGCTAACAATATCGTCTCACTCAT
ATATACATATACATGTACATATACATTATACATGTATATATTTATTTATT
TAATATCTCCGTTTCTGCTTTTTTGTATCTCTTGTTGTCTGGCAGCTAGG
GCAGTCTGACCCTGAAAAGACGGTGTGCACTCCCCAGGAAGTGACGTTTT
TTAGCGACAATCCTCTCAAGCAAGCCTCTGCAGGTGAGCGCGTTTATCCA
CAAAGAGGCAAAAGGTTGTAGCATATATTCTTTGAAAATGATAATTTCAG
TATATAGCTCCTACATGTAGTGGAGACGTGCGTGTGTTGGAACATGACAT
GATAGAAGGACCTTCGGTGAGTGATTCTCTAGCCTGATCAGACCGTTTTG
CAGGACTCCCGGGGCGTGGGCTTTTCCCAACTTGGTTGGATACTTCGGAT
GTATTTTTTTCTTGTTTCTTGTTTTTTGTCTTTTTAGTTTTTATTGCTGT
CTCTATCGGTATGTTTATTCGTCGGAATAGTAAGTATCATTACCTACTTT
ATAGTGCTTTTGTTTTATTTTTATTGGAGTGGGGCTCTCTCTGTCTGTCT
GTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGT
CTGTCTGTCTGTCTCTGTGTCTCTCTGTCTGTCTCTGTGTGTCTGTGTGT
CTGTGCCTTTGTCTATCTCTGCCTCTCTCTGTATTATGTTGTCCGCAATG
GTTGATCTCGATTGATATTGGTCTGAATTTTTGTTGTGTATTTTTGTTGT
GTGTTTTTGTCGTGTGTTGCTAACTAACTCACTAGGCGACTTTCACATGG
TGGCATTATCGCGAAGGATGGCAGTTTTCTCTTGGGGGTACGGCGCCGAG
GGTCAGGGCGGACACGGGAGTCTGTTGCACATGCGAACGCCTCGCAGGGT
GAACTCCCTCCAGGACGTGCCCATCACACAGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTATGTTCGCGTTTTTTTTGTTTTTTTTTCTTGAGCGTGAT
TGTGCGTATTTCGTGTGGTACTTGTTGTTCGTGCGGTATGTAAAACAAAT
AGCATGATAGAACTCGAGAAACGTTGAATGTTAAACTTTTTATTTTGGCG
CGAGCCGAGCCTGACTGTTTTCTTGGGGCACAGCAACATCTTGTTGTCAG
CGATATTCCTTTGAAGCCATGTCTCATATATATATATATATATATATATT
TTCGATTCTCCCAAGCGTTTGGACTTCGATGTTTTTACGATTTTTTTTTT
TTTAAGACATGTCATGACGTCATCATTACGTGAAGAAGCCGACGCTCGTA
CGGTGTAATGTTGTTGTTGCTGTTTTCGCGACGCTTGTTAGCATGAACCA
CGTAACACCATCCTCATAAAAATCTGGTGAGGGTACGTCCAAAGCACGCA
CAGAACTCGACACCAACCGTCATCCAGCAGCTTTTCATGGCGCGTTTCGT
ACATGTCTACACAGCCATCATCTACCTATCTCTACCTGCCTGCGTTTACT
CAATGCACAAGGGGCTCAAACCTTGAAAATGTATTTTTGGAGTCTGCTTT
TGGGGGGGGGGGGGGGGGGGGGGGAATGCTTTTTTTGTTTTTCATGTATT
ATGTGGCGTTATACATTGTGGATAATGGCAAAATGCAGGTGGTTTTTGGG
TTGATTTTTTCCCGTCAATGAACGCAGAAAGCAGTGATTTGACTCTTTGA
CGTGTTAGCATAACCCTCGGCTTGAAAAGAACAAGGGTTGATTCGTGCAG
GTGGCGATACTCCGACTTTTCGGAATTAAAAAGAAAATGAGCCTATCTGT
TATATAATATGCAATCAATATCTTGAGTCGTGCCGCATTACTTACCGGTA
CGGTATATTACTTGTGTGCACATTTTAGAGAAGAAAAAATTAGTCCTAAT
TTTTTTCGTGTGAAATATGTGTATTTTTTTCTGTATCATTTTTTTTTTTT
TTGTGGTGGTGTATGTTTTTCATTAATCCCCATTAGAGCAGGGCAGAAAC
AATTATTTTATTTGTGCTGGGAATGTGTGTTCTTTCAGCTTTCGTAGGTC
AGTTCTGTATAATATTTTCGGCAATATTCATGATAATGTTTGTGAGAACG
GTTTTTAATTTGGGTCGTGTACAAGGCAAGAACAGAAGAAGTTTCCTTTT
TTTTTTTTTTTAGTATTTTTTCGACCAAAAAAAAAGTGTAAATTGGAATA
GCCCAACATTGACGTCCATTTTCCCTGAAAGACGAAGTCGGGATAAACTT
CGGAATAGCTAACATTAGTTGACGATATTTTAGGTTTCTGTCGATATCAA
CAACATTCCGTCAATCTCCGTAGAGCGTGAGACACGATCCACCGAACACG
ACTACCCTAACTTTGGCACAGAGAAAAAATATTGGTATTTTCTTGTATTG
GCTAATGTGTCCGTAGAGCCGTCGATGCGGATCTTGGAATAACTAAATCA
ATGTCATTGCCCCGCGCATTTAATAGTCATGATCAACTGAATCTGCAAAT
CCCAAGGAAATGTAGACATACTTCGGTAAAATACTTGAGTATGGAGGCAT
CGGTAAAGGTTTTTGCCTCAGCCTTCCGGGGGTTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAATATATATATATATATATATATAAAACTCCCAAGTCAT
CTGTTTGAACAAACACAGCCGAGCGCTGCCGTGCAGAGAGGGACCCCGCA
CGCTTTTGCTTCACTTTTTTTTTTTTTCATAAAAAAAACGAGACAGAAAC
GCACAAACCCTGAACTTCAATATATTTTCATCGTCAAAATGTTTATTGAT
TCTTGTATGTGCCCCGGACCATCTACCGTACATATGAGTGCCCCTTTTGA
ACAACACTAAAATGAAAAAAACGGAATCAGAGGTCAACGGTTTGTTTTAT
GTGTCCGCACACATTGTAAACTTTTCAAGCATCAAGTCGTTTATCTGAAG
CGACAGGAAGAACTATTTTTTGCTTTTTTTTTCTCTGTTTACACCAGCAC
ACATACACATACATTGCTGCATTCGACCAAATTTTGTGACAGTATTTGTG
CAAATTCTTTGAGAATTCGTTTGAATTTTAACCGTGGTATTACCTATTCG
ACGCTTTGCGTATGTTTAAAAAAATTGAGTATATATACATCTATAAATAG
ATATAGATATAGATATTCAATCAATTCTGTCCTGTCCTGTTTTGCCCTCA
TATTTTTTATGCTGTATTGCGGGGTTTCTGTTCGACCCGTACAAACTACA
AAACAAGGTGGTGTGCGGGCGGTGGTGGAGCATGGCAATAACTGTGGACG
GCTACTGCTACTCCTGGGGCTGCGCCGACGGGGGATGGACGGGCTTAGCT
CTCCCTAAGGGTTTAAGCGTCGTCGATCCAGGACCGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11602:581..7569+

>mRNA_H-paniculata_contig11602.1036.1 ID=mRNA_H-paniculata_contig11602.1036.1|Name=mRNA_H-paniculata_contig11602.1036.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig11602:581..7569+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCGCATGCGGAGGCTACCATTCCGCCGTTGTGACGGATGCAGGCAG
GGTGTTCGCGTGGGGCTTCAACCGGTACGGGCAGTGTGGAAATGGAAGCA
AGGATAACACCGTGCCGGAGCCGGCGCCAGTGGATCTATCCGATCTTTCT
CCCGTTGGACTGGGCTCTTCTGCACAGCAGATCGCATGCGGAGGCTACCA
TTCCGCCGTTGTGACGGATGCAGGCAGGGTGTTCGCGTGGGGCTTCAACC
GGTACGGGCAGTGTGGAAATGGAAGCAAGGATAACACCGTGCCGGAGCCG
GCGCCAGTGGATCTATCCGATCTTTCTCCCGTTGGACTGGGCTCTTCTGC
ACAGGTGATCTGTGGACGTCATCACAGTGCCCTTCTCACCGGGTCGGGGG
CCTTATACACCTGGGGAGCATGTAGTTTTGGCAAGGTGATCTGTGGACGT
CATCACAGTGCCCTTCTCACCGGGTCGGGGGCCTTATACACCTGGGGAGC
ATGTAGTTTTGGCAAGCTAGGGCAGTCTGACCCTGAAAAGACGGTGTGCA
CTCCCCAGGAAGTGACGTTTTTTAGCGACAATCCTCTCAAGCAAGCCTCT
GCAGCTAGGGCAGTCTGACCCTGAAAAGACGGTGTGCACTCCCCAGGAAG
TGACGTTTTTTAGCGACAATCCTCTCAAGCAAGCCTCTGCAGGCGACTTT
CACATGGTGGCATTATCGCGAAGGATGGCAGTTTTCTCTTGGGGGTACGG
CGCCGAGGGTCAGGGCGGACACGGGAGTCTGTTGCACATGCGAACGCCTC
GCAGGGTGAACTCCCTCCAGGACGTGCCCATCACACAGGCGACTTTCACA
TGGTGGCATTATCGCGAAGGATGGCAGTTTTCTCTTGGGGGTACGGCGCC
GAGGGTCAGGGCGGACACGGGAGTCTGTTGCACATGCGAACGCCTCGCAG
GGTGAACTCCCTCCAGGACGTGCCCATCACACAGGTGGTGTGCGGGCGGT
GGTGGAGCATGGCAATAACTGTGGACGGCTACTGCTACTCCTGGGGCTGC
GCCGACGGGGGATGGACGGGCTTAGCTCTCCCTAAGGGTTTAAGCGTCGT
CGATCCAGGACCGGCGGTGGTGTGCGGGCGGTGGTGGAGCATGGCAATAA
CTGTGGACGGCTACTGCTACTCCTGGGGCTGCGCCGACGGGGGATGGACG
GGCTTAGCTCTCCCTAAGGGTTTAAGCGTCGTCGATCCAGGACCGGCG
back to top