mRNA_H-paniculata_contig11599.1029.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11599.1029.1
Unique NamemRNA_H-paniculata_contig11599.1029.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11599.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11599contigH-paniculata_contig11599:47..3026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size210
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11599.1029.1prot_H-paniculata_contig11599.1029.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11599 226..3026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.7597868-UTR-H-paniculata_contig11599:46..2251622928866.7597868-UTR-H-paniculata_contig11599:46..225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11599 47..225 +
1691480650.9026825-UTR-H-paniculata_contig11599:46..2251691480650.9026825-UTR-H-paniculata_contig11599:46..225Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11599 47..225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.7700386-CDS-H-paniculata_contig11599:225..3721622928866.7700386-CDS-H-paniculata_contig11599:225..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11599 226..372 +
1691480650.9102457-CDS-H-paniculata_contig11599:225..3721691480650.9102457-CDS-H-paniculata_contig11599:225..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11599 226..372 +
1622928866.7808487-CDS-H-paniculata_contig11599:2963..30261622928866.7808487-CDS-H-paniculata_contig11599:2963..3026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11599 2964..3026 +
1691480650.921927-CDS-H-paniculata_contig11599:2963..30261691480650.921927-CDS-H-paniculata_contig11599:2963..3026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11599 2964..3026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11599.1029.1

>prot_H-paniculata_contig11599.1029.1 ID=prot_H-paniculata_contig11599.1029.1|Name=mRNA_H-paniculata_contig11599.1029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MIATTRSSYKTSNKYTSRRSKNPTISYKATSTTPVHCQRHLHQQDGIYTG
TEEAYRCIARLFITRYIATG
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mRNA from alignment at H-paniculata_contig11599:47..3026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11599.1029.1 ID=mRNA_H-paniculata_contig11599.1029.1|Name=mRNA_H-paniculata_contig11599.1029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2980bp|location=Sequence derived from alignment at H-paniculata_contig11599:47..3026+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGGAGTTTCACTGTATCACTCGCCTGTGTGTTGACTCTGATTGTGATA
TATAATTACTCCGTTATACCCATGTTGAGGTTTTCCAGCTGACTTCAATC
TGCCCTCGTATACCGTTACCAGCATGAGGGAGAAGCTCGAGCCCTGATTA
TACAAAACGAACAAACACATACATGATACATGATAGCAACAACCCGCAGC
AGTTACAAGACAAGCAACAAGTACACTTCACGCAGGAGCAAGAACCCCAC
CATCAGCTACAAGGCGACATCAACCACACCCGTCCATTGCCAAAGACATC
TTCACCAGCAAGACGGCATCTATACTGTGAGGATACGGTTTGGGAAAACG
TACTATAGTGTAAGAGAGCCAGTCGAAAGTACAAGAAAATATGCACAAAC
TACCGTCTGCACTGTAGAAAACATTCACTCTCGGGACAAATCCAAATGGA
TCATTCGCAACTATCTCGAAGTATCATTATTTGTCTTGGGTGAACACGTA
TTTATCCGTTTACAACACACTCTACAGATGGTCACTGGGTGGTCGTATAC
CCGGTGAACAGTCACACATGCACGTCCTGCTTATTTTCCTGATGGTACTG
TACAGATTGAATGCTCTATCTGCCCGAGCGTTTCGATGCTCCGTTGTATA
TCGAGTACATGGCACATTATTCGCTCCAACTCAATTAGATACCGCTTTCG
TTCCGAATTTCTCGTATCTATTCGTGTCTTGTATTCGTGTTTGTCCTCGG
GGTGAAAACGTTAGTTACATTACAAAAACCGTGAAACAAAATGGAGGTGC
GCTGAGCATCTTCATGCTGCTGGATTACTTGGTCATTATTCACAAACTTA
ATCAATTAGGGGGTAAGGATGTTTACCGCATGACATATATATATATACAT
ATATTGGCCTCATCATGACCACCTACTGGGGCTTTCTGAATAGGCACGGC
ATGAGCTACAACCTTCACAATGGAGTATCACTGTCTGTAATTACTCGGGC
GTGTATTCGGATATGCCTAAACATTACAGGGCTTTCACGCGAATTTCTGA
CAGAATTAAACCACATGTTTACTCCCATGAAGTCGCACTTACGATTCAGC
CCTCTGGCCATTGTATACTGATCGTGGCTATATAATACTCATACTGAATA
TATGATATTTGAAATTTGCCGGTAGCTATATGTACCTATGTGATCGTGGA
CCCTATACATTTATATCACGATAATGTGCGCACGATAATTCTTCATGTAT
GTACGTGTGTAAAATACGAGCTTTATAATTCCCACTGCTTGTGTTGTAAT
GTACGAGGATTATTGGATATTCGTCAGATGCGTCGACACCTGCATGGGGG
AGGATTCGCAGTTGCTCATGTAGATGCTCTGTTACTAGTTGACGTGTGTG
TCTTCTGGTTTTGTCTTTATGTTTTGCGTTGCCTTCGTTTACGAGTTTTG
TCTCGTGTGTTGGTGTACCTTTTCTGCGATTTTGTTTTTTCTTGATCTTG
TTTTTTCTTTTTTTTAGGGCTCTGCTTGTTTGTAGTTCCACTTTTGTTGT
GGCATACGATTCGAGTTCCACTGGATCGCCATTTCCCCTTTGCCTACGGG
TCTGAAGGATCGGGCTAGTGTATGAACAATAATACTTTTCGTTGGTATGT
CGTTCTATGTCTACGTCCGTTGCACACGTGAATGATATACTCCTACCCCC
TGTTAGATGTCGGAATCCCCTAATTCGATAGAATTGCGGATAAGTCATCT
CTCACAACACTTGAAAGATATTACTGCGCGTCGTACCTCTGTTGTTTTCA
GGCTTGTTGGCTTACTGTGACGGTTCTAATTAGGGGGCATCTTCCCTCTT
GTACTTCATGTTGGTGTGATATCACCAAATCTCAAAATTCAAACTGTGTG
CCCATGTTGTAAATGCTGCCCCCTCCCTCAAGGCCGCCGCTAACTAATTG
ATGGTTTTGCTGACAAGTGTACGCAACTCCGATTTTCAATTGGGCAGCAT
TCCCTCTGTCATCATCCATTACGTGGGTACGACAGGATTGCTGTACTTTC
TCAAGTATGCATTTTGGCAAATAGGAAAGGTGGGAAATTTTGTTTTGATG
AAAGGGTTCGTAGGTCAAAATCGTATATATCGTGTATGTGTGTATGTATG
TACCTCCTCTATATCATAAATCCGAGTAGTTGTTTTATGATTGTAGACGC
ACTTGAACGTCTCCAATTTTAGGGTTATTATTATCAGAGAATCCTACATA
TGTTTGGGGTTGAATCCCATAATTTCGAGGAAATTGGCCAGGTCTACCGT
GCGCGTGCGCGTGCGCGTGCGCAAAACAAAATATGTTGGCCAAAAAATGT
CTATATTTTTCCAATTGAGAAACGTGAAAATCGAAGGAAATACAAAATTA
GCCCAACCTCGAGCGGCCATTAATCTTGGTGTGCAAATCGGAATACGCTT
TAGAATAGCTCATATCAACTGATCTGACATTAGGTTTCCGACGATATCAA
CAACACTCAGCGAGTCTTCGTAGAGGGTGAGATACGAACCGCCACACATA
ACCGTCTTCATCTATGGCACAGAGAAAGCGCATGTTTTTGTATGTCAGGT
GTTCACTTGTAGATAGTGTCATGCCTATACGCAGTGCACGCTGGAGTGAC
ACAGTTACACCCCTCCCCCCTCTCCCCCCTCCGTGGTGTAGATGCTATCC
TACTGCTGAGGTTTTCCTTGGCATATAAAAGTGCAGTTTGAGGTCAGCCG
CCTTACTTCAACATGGGTACAAGGAAGTTGTTATGTCAGGTTCAGAGTTG
TAGTTAAACTGACTGTGGCAGGGTTAATTTACAAACGAGAGCTTCAATTG
CTCCCCCCACCGCCGCCACCGCAACATTCGCAATACCCAACGCGTTCCGT
TTGTTGCTGTTCATCAGGGGACTGAAGAGGCGTATCGATGTATTGCCAGA
CTTTTCATTACCCGTTATATCGCCACGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11599:47..3026+

>mRNA_H-paniculata_contig11599.1029.1 ID=mRNA_H-paniculata_contig11599.1029.1|Name=mRNA_H-paniculata_contig11599.1029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig11599:47..3026+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAGCAACAACCCGCAGCAGTTACAAGACAAGCAACAAGTACACTTC
ACGCAGGAGCAAGAACCCCACCATCAGCTACAAGGCGACATCAACCACAC
CCGTCCATTGCCAAAGACATCTTCACCAGCAAGACGGCATCTATACTATG
ATAGCAACAACCCGCAGCAGTTACAAGACAAGCAACAAGTACACTTCACG
CAGGAGCAAGAACCCCACCATCAGCTACAAGGCGACATCAACCACACCCG
TCCATTGCCAAAGACATCTTCACCAGCAAGACGGCATCTATACTGGGACT
GAAGAGGCGTATCGATGTATTGCCAGACTTTTCATTACCCGTTATATCGC
CACGGGAGGGACTGAAGAGGCGTATCGATGTATTGCCAGACTTTTCATTA
CCCGTTATATCGCCACGGGA
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