mRNA_H-paniculata_contig11593.1024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11593.1024.1
Unique NamemRNA_H-paniculata_contig11593.1024.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: J9JQH8_ACYPI (GB1/RHD3-type G domain-containing protein n=9 Tax=Aphidinae TaxID=133076 RepID=J9JQH8_ACYPI)

HSP 1 Score: 53.9 bits (128), Expect = 4.650e-7
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   16 LSSCQIFNVKNQIQADNLENLAMFLEYGRRGSEDS----FGHLEFLVRDW 153
            LSS QI+N+K  IQ D+L++L +F EYGR   EDS    F  L+FLVRDW
Sbjct:  156 LSSIQIYNLKFNIQEDDLQHLQLFTEYGRLALEDSGTKPFQKLQFLVRDW 205          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: A0A2S2P5Y3_SCHGA (Atlastin (Fragment) n=2 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P5Y3_SCHGA)

HSP 1 Score: 52.8 bits (125), Expect = 1.180e-6
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   16 LSSCQIFNVKNQIQADNLENLAMFLEYGRRGSEDS----FGHLEFLVRDW 153
            LSS QI+N+K  IQ D+L++L +F EYGR   ED+    F  L+FLVRDW
Sbjct:  156 LSSIQIYNLKFNIQEDDLQHLQLFTEYGRLALEDTGTKPFQKLQFLVRDW 205          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: A0A814EGK2_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814EGK2_9BILA)

HSP 1 Score: 48.9 bits (115), Expect = 2.710e-5
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   10 LKLSSCQIFNVKNQIQADNLENLAMFLEYGRRGSEDS----FGHLEFLVRDW 153
            L +SS QI+N+   IQ D+L+NL +F +YGR   E +    F  L FLVRDW
Sbjct:  146 LMISSMQIYNISQNIQEDDLQNLQLFSDYGRLALESTSMTAFQTLIFLVRDW 197          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: E4WQQ8_OIKDI (GB1/RHD3-type G domain-containing protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4WQQ8_OIKDI)

HSP 1 Score: 48.9 bits (115), Expect = 2.730e-5
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   16 LSSCQIFNVKNQIQADNLENLAMFLEYGRRG------SEDSFGHLEFLVRDW 153
            LSS QI+NV+  +Q DNL++L +F E+GR+           F +L FLVRDW
Sbjct:  156 LSSIQIYNVRGNLQTDNLQHLQLFTEFGRQAIAQDVSDSQPFQNLLFLVRDW 207          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: A0A0L7LEK3_9NEOP (Atlastin-1 n=1 Tax=Operophtera brumata TaxID=104452 RepID=A0A0L7LEK3_9NEOP)

HSP 1 Score: 48.5 bits (114), Expect = 3.750e-5
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   16 LSSCQIFNVKNQIQADNLENLAMFLEYG---RRGSEDSFGHLEFLVRDW 153
            LSS QI+N+K+ I+ D+L+NL +F +YG   +  +  +F  LEFL+RDW
Sbjct:  147 LSSTQIYNLKDNIKEDDLQNLQLFTDYGALMKNQTGKAFQVLEFLIRDW 195          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: T1GJE2_MEGSC (GB1/RHD3-type G domain-containing protein n=1 Tax=Megaselia scalaris TaxID=36166 RepID=T1GJE2_MEGSC)

HSP 1 Score: 48.1 bits (113), Expect = 5.030e-5
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:   16 LSSCQIFNVKNQIQADNLENLAMFLEYGRRGSEDS----FGHLEFLVRDW 153
            LSS QI+N+   IQ D+ +NL +F EYGR   + S    F  L FLVRDW
Sbjct:   89 LSSVQIYNLSENIQEDDFQNLQLFTEYGRLALKKSIHKPFQELVFLVRDW 138          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: A0A4X2KCU2_VOMUR (Atlastin GTPase 3 n=5 Tax=Diprotodontia TaxID=38609 RepID=A0A4X2KCU2_VOMUR)

HSP 1 Score: 47.8 bits (112), Expect = 7.010e-5
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:   16 LSSCQIFNVKNQIQADNLENLAMFLEYGRRG----SEDSFGHLEFLVRDW 153
            +SS QIFN+   IQ D+L+ L +F EYGR      S+  F  L FLVRDW
Sbjct:  170 MSSVQIFNLSQNIQEDDLQQLQLFTEYGRLAMDEISQKPFQMLMFLVRDW 219          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: A0A6G0I2V8_LARCR (Atlastin-3 n=2 Tax=Larimichthys crocea TaxID=215358 RepID=A0A6G0I2V8_LARCR)

HSP 1 Score: 47.8 bits (112), Expect = 7.030e-5
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   19 SSCQIFNVKNQIQADNLENLAMFLEYGRRGSEDSF----GHLEFLVRDW 153
            SS QI+N+   IQ D+L+ L +F EYGR   ++SF     +L FL+RDW
Sbjct:  405 SSIQIYNLSQNIQEDDLQQLQLFTEYGRLAMDESFLKPFQNLMFLIRDW 453          
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Match: A0A4V6ANC8_COLLU (Atlastin-3 n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4V6ANC8_COLLU)

HSP 1 Score: 47.8 bits (112), Expect = 7.050e-5
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   19 SSCQIFNVKNQIQADNLENLAMFLEYGRRGSEDSF----GHLEFLVRDW 153
            SS QI+N+   IQ D+L+ L +F EYGR   ++SF     +L FL+RDW
Sbjct:  654 SSIQIYNLSQNIQEDDLQQLQLFTEYGRLAMDESFLKPFQNLMFLIRDW 702          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11593.1024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
J9JQH8_ACYPI4.650e-756.00GB1/RHD3-type G domain-containing protein n=9 Tax=... [more]
A0A2S2P5Y3_SCHGA1.180e-654.00Atlastin (Fragment) n=2 Tax=Schizaphis graminum Ta... [more]
A0A814EGK2_9BILA2.710e-548.08Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
E4WQQ8_OIKDI2.730e-546.15GB1/RHD3-type G domain-containing protein n=2 Tax=... [more]
A0A0L7LEK3_9NEOP3.750e-546.94Atlastin-1 n=1 Tax=Operophtera brumata TaxID=10445... [more]
T1GJE2_MEGSC5.030e-550.00GB1/RHD3-type G domain-containing protein n=1 Tax=... [more]
A0A4X2KCU2_VOMUR7.010e-550.00Atlastin GTPase 3 n=5 Tax=Diprotodontia TaxID=3860... [more]
A0A6G0I2V8_LARCR7.030e-546.94Atlastin-3 n=2 Tax=Larimichthys crocea TaxID=21535... [more]
A0A4V6ANC8_COLLU7.050e-546.94Atlastin-3 n=1 Tax=Collichthys lucidus TaxID=24015... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11593contigH-paniculata_contig11593:7352..7504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.39662-CDS-H-paniculata_contig11593:7351..75041622928866.39662-CDS-H-paniculata_contig11593:7351..7504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11593 7352..7504 +
1691480650.676521-CDS-H-paniculata_contig11593:7351..75041691480650.676521-CDS-H-paniculata_contig11593:7351..7504Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11593 7352..7504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11593.1024.1prot_H-paniculata_contig11593.1024.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11593 7352..7504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11593.1024.1

>prot_H-paniculata_contig11593.1024.1 ID=prot_H-paniculata_contig11593.1024.1|Name=mRNA_H-paniculata_contig11593.1024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
ACCLKLSSCQIFNVKNQIQADNLENLAMFLEYGRRGSEDSFGHLEFLVRD
W
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mRNA from alignment at H-paniculata_contig11593:7352..7504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11593.1024.1 ID=mRNA_H-paniculata_contig11593.1024.1|Name=mRNA_H-paniculata_contig11593.1024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig11593:7352..7504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTGTTGCCTGAAGCTAAGCTCGTGTCAGATCTTCAACGTGAAGAATCA GATTCAGGCTGATAATCTGGAAAACCTCGCGATGTTCCTGGAGTACGGCA GGAGAGGATCAGAAGACTCCTTTGGGCATCTAGAATTTCTCGTGCGGGAT TGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11593:7352..7504+

>mRNA_H-paniculata_contig11593.1024.1 ID=mRNA_H-paniculata_contig11593.1024.1|Name=mRNA_H-paniculata_contig11593.1024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig11593:7352..7504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTGTTGCCTGAAGCTAAGCTCGTGTCAGATCTTCAACGTGAAGAATCA
GATTCAGGCTGATAATCTGGAAAACCTCGCGATGTTCCTGGAGTACGGCA
GGAGAGGATCAGAAGACTCCTTTGGGCATCTAGAATTTCTCGTGCGGGAT
TGGGCTTGTTGCCTGAAGCTAAGCTCGTGTCAGATCTTCAACGTGAAGAA
TCAGATTCAGGCTGATAATCTGGAAAACCTCGCGATGTTCCTGGAGTACG
GCAGGAGAGGATCAGAAGACTCCTTTGGGCATCTAGAATTTCTCGTGCGG
GATTGG
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