mRNA_H-paniculata_contig11592.1022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11592.1022.1
Unique NamemRNA_H-paniculata_contig11592.1022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11592.1022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11592contigH-paniculata_contig11592:62..716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size655
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11592.1022.1prot_H-paniculata_contig11592.1022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11592 316..696 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.2262514-UTR-H-paniculata_contig11592:61..3151622928866.2262514-UTR-H-paniculata_contig11592:61..315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11592 62..315 +
1691480650.6200786-UTR-H-paniculata_contig11592:61..3151691480650.6200786-UTR-H-paniculata_contig11592:61..315Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11592 62..315 +
1622928866.2681108-UTR-H-paniculata_contig11592:696..7161622928866.2681108-UTR-H-paniculata_contig11592:696..716Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11592 697..716 +
1691480650.6373084-UTR-H-paniculata_contig11592:696..7161691480650.6373084-UTR-H-paniculata_contig11592:696..716Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11592 697..716 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.2439094-CDS-H-paniculata_contig11592:315..6961622928866.2439094-CDS-H-paniculata_contig11592:315..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11592 316..696 +
1691480650.6295793-CDS-H-paniculata_contig11592:315..6961691480650.6295793-CDS-H-paniculata_contig11592:315..696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11592 316..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11592.1022.1

>prot_H-paniculata_contig11592.1022.1 ID=prot_H-paniculata_contig11592.1022.1|Name=mRNA_H-paniculata_contig11592.1022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MSYTSSKSRLHVWVCCILPHLVHDLVISWFLVSQFTRGMDKNIVAPTQHN
TSTTLGCLLYVPPLYRLRTGKRNPSALFHLILPRIVYDCTWKSATRAALH
GYSNILSPRPLGKKPGKQRKKNYINR*
back to top

mRNA from alignment at H-paniculata_contig11592:62..716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11592.1022.1 ID=mRNA_H-paniculata_contig11592.1022.1|Name=mRNA_H-paniculata_contig11592.1022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=655bp|location=Sequence derived from alignment at H-paniculata_contig11592:62..716+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGGCAGTGTGGGGGTTGCACCCACTAAAAGACCTCTGACTAGACTTC
CAGTCATGCTCAATTCACGACCTACCCTACCCGTTCGGGCGTAGGTCCGT
GGTGAGAGATAAAGATACCACCGTCTAATAGTTAGTCATGCGGTGTGGAA
TGTCTCCTTATTCCAGACAAAGTGGCCACCCGCAATGACGTGAATGAACC
CTCCATCAATCCAACTATCCCAACTCGTCACGGATACAGGAGCGACTGTA
CTGAATGTCTTACACATCTAGCAAATCGCGTCTACATGTATGGGTGTGTT
GTATTTTGCCTCATCTTGTTCATGATTTGGTTATATCCTGGTTTCTGGTA
TCGCAGTTTACCCGAGGTATGGATAAAAATATTGTAGCTCCAACACAACA
CAACACAAGCACTACGCTTGGCTGCCTGCTGTATGTACCACCGCTGTACA
GGTTGCGAACGGGGAAACGAAATCCCTCAGCCCTTTTCCATTTAATTTTG
CCGAGAATTGTATACGATTGTACTTGGAAGTCAGCCACACGGGCAGCTCT
ACACGGGTACAGCAATATCCTCTCTCCCCGCCCCCTCGGAAAAAAACCCG
GTAAACAGAGAAAAAAAAATTATATTAATCGTTGATAACTCGCCTTCAAT
ACACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11592:62..716+

>mRNA_H-paniculata_contig11592.1022.1 ID=mRNA_H-paniculata_contig11592.1022.1|Name=mRNA_H-paniculata_contig11592.1022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig11592:62..716+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTACACATCTAGCAAATCGCGTCTACATGTATGGGTGTGTTGTAT
TTTGCCTCATCTTGTTCATGATTTGGTTATATCCTGGTTTCTGGTATCGC
AGTTTACCCGAGGTATGGATAAAAATATTGTAGCTCCAACACAACACAAC
ACAAGCACTACGCTTGGCTGCCTGCTGTATGTACCACCGCTGTACAGGTT
GCGAACGGGGAAACGAAATCCCTCAGCCCTTTTCCATTTAATTTTGCCGA
GAATTGTATACGATTGTACTTGGAAGTCAGCCACACGGGCAGCTCTACAC
GGGTACAGCAATATCCTCTCTCCCCGCCCCCTCGGAAAAAAACCCGGTAA
ACAGAGAAAAAAAAATTATATTAATCGTTGAATGTCTTACACATCTAGCA
AATCGCGTCTACATGTATGGGTGTGTTGTATTTTGCCTCATCTTGTTCAT
GATTTGGTTATATCCTGGTTTCTGGTATCGCAGTTTACCCGAGGTATGGA
TAAAAATATTGTAGCTCCAACACAACACAACACAAGCACTACGCTTGGCT
GCCTGCTGTATGTACCACCGCTGTACAGGTTGCGAACGGGGAAACGAAAT
CCCTCAGCCCTTTTCCATTTAATTTTGCCGAGAATTGTATACGATTGTAC
TTGGAAGTCAGCCACACGGGCAGCTCTACACGGGTACAGCAATATCCTCT
CTCCCCGCCCCCTCGGAAAAAAACCCGGTAAACAGAGAAAAAAAAATTAT
ATTAATCGTTGA
back to top