mRNA_H-paniculata_contig11588.1019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11588.1019.1
Unique NamemRNA_H-paniculata_contig11588.1019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A6H5JS50_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JS50_9PHAE)

HSP 1 Score: 382 bits (980), Expect = 4.870e-124
Identity = 191/257 (74.32%), Postives = 223/257 (86.77%), Query Frame = 3
Query:    9 RFRLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVID 779
            RF+ GDRVV+FVGFGG++T++VV+E +VAPLPSGMDF T +   +AYGTADYALR+RA +R GELVLVLGASGGVGLAAVQLAKAAGATVIAAAST EKL+ CRDSGADFLLNYR   +   G  R G+WR ALKRL G RG+DVVLD+VGGADCETA+RS+AVGGRYLV+GFASGTIPAP LNLVLLKE CV+G+FWGAW +R+PE SA+Q+ E+VRL   G V+P ISRVYPL +APRAL+DMGAR+VVGK+VID
Sbjct:   79 RFKPGDRVVSFVGFGGFSTNVVVREGSVAPLPSGMDFFTASCLFVAYGTADYALRIRANLRRGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTREKLQACRDSGADFLLNYRQG-NGNGGDQRGGDWRGALKRLTGGRGVDVVLDNVGGADCETAVRSLAVGGRYLVVGFASGTIPAPPLNLVLLKEACVMGVFWGAWREREPEKSAEQMVEIVRLVSLGKVKPTISRVYPLDQAPRALEDMGARKVVGKVVID 334          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A7V8JYE5_9BURK (Quinone oxidoreductase 1 n=3 Tax=unclassified Variovorax TaxID=663243 RepID=A0A7V8JYE5_9BURK)

HSP 1 Score: 248 bits (632), Expect = 9.350e-73
Identity = 132/256 (51.56%), Postives = 174/256 (67.97%), Query Frame = 3
Query:    9 RFRLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVI 776
            RF+ GDRV+A   +GGY  ++V +     P+P GMDF T A+F L YGT+ +AL+ RA ++ GE +LVLGA+GGVGLAAV+L KA GA VIAAAS+P KL  CRD GAD L++Y            A + R+ +K L G RG+DVV D VGG   E ALR MA  GR+LV+GFA+G IP+  LNL LLK   V+G+FWGA+ + +PE +A  L+EL++  G+G +RP +S  YPL  A  ALDD+  RRV GK+V+
Sbjct:   78 RFKPGDRVIAATTWGGYAEEVVAEAARTLPMPDGMDFATAAAFTLTYGTSHHALKDRAVLQPGETLLVLGAAGGVGLAAVELGKAMGARVIAAASSPAKLAVCRDHGADELIDY-----------AAEDLRERIKALTGGRGVDVVYDPVGGDYSEPALRGMAWRGRFLVVGFAAGRIPSLPLNLPLLKGCAVLGVFWGAFTRNEPELNAANLRELMQWVGDGRLRPHVSARYPLERAADALDDLVQRRVHGKVVL 322          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: UPI001C441DB0 (NADPH:quinone oxidoreductase family protein n=1 Tax=Duganella sp. sic0402 TaxID=2854786 RepID=UPI001C441DB0)

HSP 1 Score: 245 bits (626), Expect = 7.490e-72
Identity = 125/255 (49.02%), Postives = 175/255 (68.63%), Query Frame = 3
Query:   12 FRLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVI 776
            F++GD+V+AF   GG+   L+     + P+P GMDF T A+  L YGT+ +A+  RAK++ GE +L+LGA+GGVGLAA+++ KA GA +IA AS+ EKL  CR  GAD L+NY          SR  +WR+A+K   G +G+DVV D VGG   E A RS+A GGRYLV+GFA+G IP   LNL LLK   ++G+FWG + KRDP+G+   +++L++   EG ++P IS  Y L++AP+AL+DM ARRV GK+V+
Sbjct:   79 FKVGDKVIAFTSTGGFGQQLLAPVQALIPMPPGMDFDTAAAITLTYGTSYHAIVDRAKLKNGENMLILGAAGGVGLAAIEIGKALGARIIACASSEEKLAVCRQHGADVLINY----------SRE-DWREAVKAATGGKGVDVVYDPVGGDYAEPAFRSIAWGGRYLVVGFANGEIPKLPLNLTLLKGASLVGVFWGEFTKRDPKGNMGNMRQLLQWLQEGKIKPRISARYALNDAPQALNDMAARRVTGKIVV 322          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A0Q8QBC2_9BURK (NADPH:quinone oxidoreductase n=2 Tax=Oxalobacteraceae TaxID=75682 RepID=A0A0Q8QBC2_9BURK)

HSP 1 Score: 245 bits (625), Expect = 1.110e-71
Identity = 128/255 (50.20%), Postives = 174/255 (68.24%), Query Frame = 3
Query:   12 FRLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVI 776
            FR G+RV+A  G+GGY    + +E +  PLP G+DF   A+F++AYGT  YAL+ RA +R GE +LVLGA+GG GL+AV++ K  GA VIAAAS+ EKL  CR+ GAD L+NY          SR  + RQ LK L G RG+D+V D VGG+  E ALRSMA  GR+LVIGF +G IP  +LNL LLK   ++G++WG +L+ +PE +A   +ELV  + +G VRP IS+ YPL +A +AL ++ AR+  GK+V+
Sbjct:   79 FRPGERVIAVPGYGGYAEQTLAREEDTFPLPDGIDFADAAAFLIAYGTTHYALQERAALRPGETLLVLGAAGGTGLSAVEMGKLLGARVIAAASSDEKLALCREHGADELINY----------SRE-DLRQRLKELTGGRGVDIVYDPVGGSFSEAALRSMAWNGRFLVIGFTAGEIPKVALNLTLLKGCSIVGVWWGGFLRSEPERAAALTRELVEWFRQGKVRPYISKRYPLEQAAQALAEVAARKATGKIVL 322          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A7X7AKE0_9BURK (NADPH:quinone oxidoreductase family protein n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7X7AKE0_9BURK)

HSP 1 Score: 242 bits (617), Expect = 1.410e-70
Identity = 123/256 (48.05%), Postives = 170/256 (66.41%), Query Frame = 3
Query:    9 RFRLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVI 776
            +F +G RVVA +G+GG+  + +       PLP GM F   ++FVL YGT+ YAL+ RA+++ GE +L+LGA+GGVGLAA+Q+AKA GA VIAAAS+ EK + C   GAD +++Y              ++R  LK L G +G+DV+ D VGG+  E A RS+A  GR+LV+GFA+G IP   LNL LLK   ++G+FWGA+ + +PE  AQ +KEL  LY EG V+PVI   YPL  AP AL+ +  R+ +GK+VI
Sbjct:   78 QFEVGQRVVAPIGYGGFAEEAIADASRACPLPEGMSFEEASAFVLTYGTSYYALKNRAELKKGETLLILGAAGGVGLAAIQIAKAMGAVVIAAASSEEKRQLCLREGADHVVDYTQE-----------DFRDRLKELTGGKGVDVIYDPVGGSASEPAFRSIAWKGRFLVVGFAAGDIPRIPLNLPLLKGASIVGVFWGAFGRTEPEADAQNMKELFELYAEGKVKPVICATYPLERAPEALEFVAGRQALGKVVI 322          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A6B3SZ63_9BURK (NADPH:quinone oxidoreductase family protein n=1 Tax=Noviherbaspirillum galbum TaxID=2709383 RepID=A0A6B3SZ63_9BURK)

HSP 1 Score: 241 bits (616), Expect = 2.290e-70
Identity = 129/256 (50.39%), Postives = 172/256 (67.19%), Query Frame = 3
Query:    9 RFRLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVI 776
            RFR GDRV+A  G+GGY    + +E +V PLP G+DF   A+F++AYGT  YAL+ RA +RTGE +LVLGA+GG GL+AV+L K  GA VIAAAS+ EKL  CR+ GAD ++NY          SR  + RQ LK + G RG+DVV D VGG+  E ALRSMA  GR+LVIGF +G IP   LNL LLK   ++G++WG +L+ +P+ +A   +ELV  + +G VRP +S  Y L +A  AL  +  R+V GK+V+
Sbjct:   78 RFRAGDRVIAVPGYGGYAEQALAREEDVFPLPEGIDFGDAAAFLVAYGTTHYALQERAAIRTGETLLVLGAAGGTGLSAVELGKLLGARVIAAASSDEKLALCREHGADEVINY----------SRE-DLRQRLKEMTGGRGVDVVYDPVGGSYSEAALRSMAWNGRFLVIGFTAGDIPRVPLNLTLLKGCSIVGVWWGGFLRAEPQRAAALTQELVEWFRQGKVRPHVSMRYSLDQAAVALSQVAQRKVTGKMVL 322          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A024HB33_PSEKB (Quinone oxidoreductase-like protein 2 homolog n=38 Tax=Proteobacteria TaxID=1224 RepID=A0A024HB33_PSEKB)

HSP 1 Score: 241 bits (615), Expect = 2.760e-70
Identity = 121/257 (47.08%), Postives = 175/257 (68.09%), Query Frame = 3
Query:    6 NRFRLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVI 776
            +  ++GDRV+A  G+G +   + V   NV P+P+GMDF T A+F + YGT+ +AL+ RA ++ GE +LVLGASGGVGLAAV++ KA GA VIAAAS+  KLE  + +GAD L+NY +           G+ +  LK + G +G+DV+ D VGG   E A RS+A  GR LV+GFASGTIP+   NL LLK   ++G+FWGA+ +R P+ +A   ++L + YGEG ++P++S+ YPL +A  A++ +G RR VGK+V+
Sbjct:   77 SHLKVGDRVIALTGWGSFAEQVAVGGYNVLPIPAGMDFTTAAAFGMTYGTSMHALKQRANLQPGETLLVLGASGGVGLAAVEIGKAMGAKVIAAASSDAKLEVAKAAGADVLINYSE-----------GSLKDKLKEITGGQGVDVIYDPVGGDFFEEAFRSIAWNGRLLVVGFASGTIPSLPANLPLLKGASLVGVFWGAFAQRQPQDNAANFQQLFQWYGEGKLKPLVSQTYPLEKAADAINHLGQRRAVGKVVV 322          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A3G8YA47_9DEIO (NADPH:quinone oxidoreductase family protein n=3 Tax=Deinococcus TaxID=1298 RepID=A0A3G8YA47_9DEIO)

HSP 1 Score: 240 bits (612), Expect = 7.790e-70
Identity = 129/255 (50.59%), Postives = 166/255 (65.10%), Query Frame = 3
Query:   15 RLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVID 779
            ++GDRV +FV  GG+    V       PLP+G+DF  GA+  LAYGT+ +AL  RA+++ G+ +LVLGA+GGVGLAAVQ+ KA GA VIAAAST EKLE CR +GAD  +NY              + R ALK L G +G DV+ D VGG   E A RS+A GG+YLV+GFA G IPA  LNL LLK   ++G+FWG + KRDP+ +   L +L+   GEG V+P IS  Y L + P+AL DM  R+V GK VI+
Sbjct:   80 KVGDRVASFVQLGGFAQQAVAPANATFPLPNGVDFAEGAALPLAYGTSAHALLDRAELKAGQTLLVLGAAGGVGLAAVQIGKALGARVIAAASTDEKLELCRQNGADDTINY-----------STQDLRSALKELTGGKGPDVIYDPVGGKLAEPAFRSIAWGGKYLVVGFAEGEIPALPLNLALLKGASIVGVFWGEFAKRDPKKNLANLHQLLTWMGEGKVKPYISARYALADVPQALKDMAGRKVTGKAVIE 323          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A3D0ETH9_9PROT (NADPH:quinone oxidoreductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3D0ETH9_9PROT)

HSP 1 Score: 239 bits (611), Expect = 1.090e-69
Identity = 126/257 (49.03%), Postives = 174/257 (67.70%), Query Frame = 3
Query:   15 RLGDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVIDCS 785
            ++GDRV+AF  +GG+  +LVV +     +   MDF   ++FVL YGT+ +AL+ RA +R GE +LVLGASGGVG+AA+QL KA GATVIAAAS  EKL  C+ SGAD L+NY +            + RQ++K +   RG+DVV D VGG+  E ALR M+ GGR+LV+GFASG IP   LNL LLK   V+G+FWG + KR+PE + +  +EL+ L+ +G + P I +VYPL  A  AL+++  +RV+GK+V+  S
Sbjct:   80 KVGDRVIAFSTWGGFAEELVVDQSRTVMISDKMDFERASAFVLTYGTSYHALKDRALLRAGETLLVLGASGGVGIAAIQLGKALGATVIAAASNAEKLSVCKQSGADHLINYSE-----------SDLRQSVKEITQGRGVDVVYDPVGGSFSEKALRDMSWGGRFLVVGFASGEIPKVPLNLPLLKGCSVVGVFWGEFTKREPELNRKNNQELMDLFDQGKISPHIHKVYPLERAGEALNELLQKRVIGKVVLSTS 325          
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Match: A0A4U1HPY3_9DELT (NADPH:quinone oxidoreductase family protein n=1 Tax=Polyangium aurulentum TaxID=2567896 RepID=A0A4U1HPY3_9DELT)

HSP 1 Score: 239 bits (611), Expect = 1.120e-69
Identity = 125/252 (49.60%), Postives = 172/252 (68.25%), Query Frame = 3
Query:   21 GDRVVAFVGFGGYTTDLVVKEINVAPLPSGMDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAKAAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQALKRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLNLVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYPLHEAPRALDDMGARRVVGKLVI 776
            GDRV+A   +GG++ ++VV E NVAP+P GMDF+T ++F++AYGT+ +AL  RA+++ GE + VLGA+GGVGLAAV++ K  GA VIA AS  +KLE C++ GAD ++NY              + ++ +K L G +G DVV D VGG   E ALRS A  GR+LV+GFA G IP   LNLVLLK   V+G+FWG+++ R+PE + Q L EL+R + E  +RP +S  +PL  A  ALD M ARRV GK+V+
Sbjct:   82 GDRVLATTMWGGFSEEVVVGEANVAPIPDGMDFVTASAFLMAYGTSHHALVDRAQLKAGETLCVLGAAGGVGLAAVEIGKVLGARVIACASADDKLEVCKEHGADAVVNY-----------AREDLKERIKELTGGKGADVVYDPVGGPFSEAALRSTAWEGRFLVVGFAGGEIPRIPLNLVLLKGCQVVGVFWGSFIAREPERNRQNLAELLRWFEEKKIRPHVSETFPLERAKDALDAMAARRVKGKVVL 322          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11588.1019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JS50_9PHAE4.870e-12474.32PKS_ER domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7V8JYE5_9BURK9.350e-7351.56Quinone oxidoreductase 1 n=3 Tax=unclassified Vari... [more]
UPI001C441DB07.490e-7249.02NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A0Q8QBC2_9BURK1.110e-7150.20NADPH:quinone oxidoreductase n=2 Tax=Oxalobacterac... [more]
A0A7X7AKE0_9BURK1.410e-7048.05NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A6B3SZ63_9BURK2.290e-7050.39NADPH:quinone oxidoreductase family protein n=1 Ta... [more]
A0A024HB33_PSEKB2.760e-7047.08Quinone oxidoreductase-like protein 2 homolog n=38... [more]
A0A3G8YA47_9DEIO7.790e-7050.59NADPH:quinone oxidoreductase family protein n=3 Ta... [more]
A0A3D0ETH9_9PROT1.090e-6949.03NADPH:quinone oxidoreductase n=1 Tax=Betaproteobac... [more]
A0A4U1HPY3_9DELT1.120e-6949.60NADPH:quinone oxidoreductase family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11588contigH-paniculata_contig11588:870..5580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score334.0
Seed ortholog evalue6.2e-89
Seed eggNOG ortholog2880.D8LJN9
KEGG rclassRC00013,RC02518,RC02873
KEGG koko:K00344,ko:K00384,ko:K15172
KEGG ReactionR02016,R03596,R09372
KEGG Pathwayko00450,map00450
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0604@1,KOG1198@2759
EC1.6.5.5,1.8.1.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Exons5
Model size2077
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928865.4475489-UTR-H-paniculata_contig11588:869..9791622928865.4475489-UTR-H-paniculata_contig11588:869..979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11588 870..979 +
1691480650.3153193-UTR-H-paniculata_contig11588:869..9791691480650.3153193-UTR-H-paniculata_contig11588:869..979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11588 870..979 +
1622928865.6390338-UTR-H-paniculata_contig11588:4360..55801622928865.6390338-UTR-H-paniculata_contig11588:4360..5580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11588 4361..5580 +
1691480650.3746417-UTR-H-paniculata_contig11588:4360..55801691480650.3746417-UTR-H-paniculata_contig11588:4360..5580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11588 4361..5580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928865.575865-CDS-H-paniculata_contig11588:979..10421622928865.575865-CDS-H-paniculata_contig11588:979..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 980..1042 +
1691480650.3294582-CDS-H-paniculata_contig11588:979..10421691480650.3294582-CDS-H-paniculata_contig11588:979..1042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 980..1042 +
1622928865.5877266-CDS-H-paniculata_contig11588:1683..17701622928865.5877266-CDS-H-paniculata_contig11588:1683..1770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 1684..1770 +
1691480650.3388667-CDS-H-paniculata_contig11588:1683..17701691480650.3388667-CDS-H-paniculata_contig11588:1683..1770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 1684..1770 +
1622928865.59933-CDS-H-paniculata_contig11588:2338..25541622928865.59933-CDS-H-paniculata_contig11588:2338..2554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 2339..2554 +
1691480650.3487048-CDS-H-paniculata_contig11588:2338..25541691480650.3487048-CDS-H-paniculata_contig11588:2338..2554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 2339..2554 +
1622928865.6132977-CDS-H-paniculata_contig11588:3360..35181622928865.6132977-CDS-H-paniculata_contig11588:3360..3518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 3361..3518 +
1691480650.3589246-CDS-H-paniculata_contig11588:3360..35181691480650.3589246-CDS-H-paniculata_contig11588:3360..3518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 3361..3518 +
1622928865.626889-CDS-H-paniculata_contig11588:4137..43601622928865.626889-CDS-H-paniculata_contig11588:4137..4360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 4138..4360 +
1691480650.3666694-CDS-H-paniculata_contig11588:4137..43601691480650.3666694-CDS-H-paniculata_contig11588:4137..4360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11588 4138..4360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11588.1019.1prot_H-paniculata_contig11588.1019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11588 980..4360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11588.1019.1

>prot_H-paniculata_contig11588.1019.1 ID=prot_H-paniculata_contig11588.1019.1|Name=mRNA_H-paniculata_contig11588.1019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MDFITGASFVLAYGTADYALRVRAKVRTGELVLVLGASGGVGLAAVQLAK
AAGATVIAAASTPEKLETCRDSGADFLLNYRDPKDSRAGKSRAGNWRQAL
KRLVGPRGIDVVLDSVGGADCETALRSMAVGGRYLVIGFASGTIPAPSLN
LVLLKEVCVIGIFWGAWLKRDPEGSAQQLKELVRLYGEGLVRPVISRVYP
LHEAPRALDDMGARRVVGKLVIDCSEKAGPAVGGGEESRHDRTVVSRL*
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mRNA from alignment at H-paniculata_contig11588:870..5580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11588.1019.1 ID=mRNA_H-paniculata_contig11588.1019.1|Name=mRNA_H-paniculata_contig11588.1019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4711bp|location=Sequence derived from alignment at H-paniculata_contig11588:870..5580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCAATAGGTTTCGGCTGGGCGACAGGGTCGTGGCTTTTGTCGGTTTC GGCGGCTACACCACGGATCTCGTCGTCAAGGAGATCAACGTTGCGCCGTT ACCATCAGGAATGGACTTCATAACCGGGGCGTCTTTTGTTCTGGCCTACG GCACTGCAGACTACGCATTAAGGGTGAATGAATTTTCAGGGGTGGGAGGT TTTAGGGCAGAGGGGGAAATGAGATGATGGAAAGTCCGACGAATCAACGC CTTTATGGTCTTGTATGATTGATCATCTATCTTGAGGTCGATTGCGTTAG TCGGATCCTAGAACGGCGAGCACCAGAATAAAATTTGTTGCCAAGTTCCT TGGTATTTAGATGCTCCCGTTACTCAACGGTCTAACAATTTCGACATGCA AAACATGAATACACCCCCCTCCCATCCCCTGCCTCTCGATAAACCACGGA GAGCCAGCCGTATAGCTGGTACGACCTGGTTACAGGATTCTCAGTGCCTT TAATGTAATCCTCACGGACACAAGAGGTTATACGACAAAATAATTTCTAC CGCGCTTTTCTCTGTAGATTGGACTCACGCTTGGCGGTGAGGCCGGCCTG CTTGCTTCCTGAATTTGTGCATCACAGGCGATGGATCCTTGGGTCATCCG CTAGCCCATCGGCAACGCCTGGTATACATTTGTTTCTTCTCATAATGATA CATCATGAAATTCAGCTCCCTCGCCTTCACTCACTTGCCTACGCATCTCA CCATTCTTGGCGCGATGTCGTATCACACTACTGCGTCTATCGTCCTGCTT GCAAATGCAAGCAGGTGCGGGCGAAGGTACGAACAGGAGAGCTTGTCCTG GTGCTGGGAGCGTCGGGAGGAGTGGGGTTGGCCGCCGTCCAGCTCGCAAA GGTGACATGCTGTCTCGTTAATACCCTATCCGGTGTTTGGTGGTTTGGTT GGGAGAGAGAGAGAGAGGTGTTAATGATCCTGTGATGACTATCGGACACT AAGAGCTACCCATAGTTTATGGCGATCAAAGGTACCGCGGTGATATATTT TTTTATCGCTTTGATTATTCTCTTTGCGCTACACAAGATATCTAAGCATA ATCTCGATTACTGTAGATGTACAATTTTGTTCAGCTCCTGTGCTGCTTGA GCATGAGTGTTTGTCATTTGGCGTGCTCGTACCATCCGCCCCTCGCCCCT CGCCCCCCCCTCCCCGCCCGTGTCGGCATCTCCCTGCGTTGATCCTCCTT CCCATATCCACCTACGCTACGTTTTCCAACAGTGTAACACGCTTTTTGAG GTGTGGAGCTAGCCATTTGCCCGCGATACGTCTGGGGATATTTGGTGCGA ATGTGTTCGAATTTATTAATCAACTGAAGAAGATCACTCGACCAAGGACA CCGCCCGCAAATCGTGTTCTGAGGGACCAGCTAAATTCGAAAACACTATC CGAAACCCTCTCAACGCAGGCGGCCGGAGCTACGGTGATTGCGGCGGCAT CGACTCCCGAAAAACTCGAGACTTGCAGAGATTCGGGAGCCGATTTCTTG CTCAACTACAGAGACCCGAAGGACAGCAGGGCAGGAAAGAGCCGGGCGGG GAATTGGCGGCAGGCGCTCAAGAGACTCGTCGGCCCGAGGGGGATCGATG TCGTTCTTGATTCGGTCGGCGGAGCTGATTGCGAGGTAATGCACTGGCAC CTTTGCGATTATTCGTTGCCGTACAGCTGCATGTTGTGTTTTTTTCAAAT ATTCATCCGGGGGATTATTGCAGTTTCAATTTCAGTTATAGTTGTGGTTG CGGTTCGAGTGTGATGAGCAAGACATTGCGCACATGTCATATTGTTCGTT CGCAAGGGTTGCGCGTCCCTCGTTTCCTCGGTTTTAACGCGCGCAAATTA AAAGTCCAAGGTCCTGTAAGCAAAACTACACAGAATATTTATCTCCTTCA GGGACGTGAGGGGCGGAGCGGGGTGTGTGCAATCATCGCTACGTACACTC AATCAACAAAAGATAGACAAATTCAGGGAGGTCAATGGTTCAACAGTGGT TCTTTGCGTATCACGTCTAGAAGAAAAAGTGGATAAAAAAGCCATCGATT TCGCCGTTTGATGCCGCCTGCGTGCTTGTGGCATGCGTTACCCTACCCGT CAGCCTCAAGGCGGAGGTATTAGAAATGTCCATAGAACCGGAAAGCTTCG AGGCTGCACCGCAAAAGTAGTCCTTATTCCATTTTAGTAAATCTATCGGT CGCAACCGTTCCGATCCCACATCGTTCGTAGAACTCAACCCCACTCTCAC TTGAGCTACGCCACTTCCCCAATTTGTAAAACTCTCGTTCGTTGTTTGCA AGCACTTCCCCCTATAGTTCAGTGTGTGGGTAAGTAATCTAGCAGCTTGA AGATGCTGAGTATACCTCCATTATGTTGACGGGTTATTGTCATGTTTAGA TCATTCTCTCCCCCCTCCTGCCCATCTCGCGCAACTTGAAGACAGCACTT CGGAGCATGGCGGTCGGCGGACGTTACCTGGTGATCGGGTTCGCGTCCGG CACTATACCGGCGCCCTCGTTGAACCTCGTGTTACTGAAGGAGGTGTGCG TTATCGGCATCTTTTGGGGGGCATGGTTAAAAAGGGATCCAGAGGGCAGG TGTGTCGTACGTTCTGGCTTGCACACGTCGGTTTCAAGGAGAAGCAGAAC GTCGAAGCGATGGATAATGACATTCCAAACAGACGAAACTCGACCTGTCT TTTGCTGCCTGCCAAACACTGGATGATGACTATATTCATGGCGGGGAAGA AGTTCTTTGGGCCCAGCCAGTGGAAGATTGTGCTGTTTCTGCTCATCATC CTGAAGATCGTTGTTTCACCTTTGAAAAGGGAAAATAATGCAAAGAAAAG TTAATAAAGCGCGAATACAGGGCACGCACGGCGAGGCATATTCAATGTGT GCTCACTTGAATAGCGTGTGCAGCTTTTTTTACCGTTCGTGTACAGGTCA GCCTCACCCGACGCGGAGCGATTGGCCATCAGAAATCGCCCTGACAGGAA CAAAGCCCCACCCTCCCGAGGACGCGTGGTCAATGGTGTGACAATTACGG CATGCAGAACATTAGTACGCCCCGCCCCCTACTCCCTCCCGATGCACGCC CCATTCCGCTTGCGTATTGTGTCTCCTTGCGCCAGCCACTCCGTCCATTT CCATTTGAATCTACTTCCCCCCCGCGCGCTTTTTTTATCCCAATTTCGGT TTGCTGTTACATTTGCAGCGCTCAACAGCTAAAAGAGCTGGTGCGCCTGT ATGGAGAAGGACTAGTACGACCCGTCATCAGTCGAGTTTATCCGTTGCAC GAGGCTCCGCGGGCGTTGGATGATATGGGGGCCCGGCGAGTGGTGGGAAA ATTGGTGATAGATTGTTCTGAAAAGGCGGGGCCTGCGGTGGGGGGAGGGG AGGAGAGCAGGCACGACAGAACGGTGGTTTCACGCCTCTAGTTTAATTTT CGTCGTACGTATGCGAGCATATCGTTATAACTAACTTGATTTTGTACTTC CGTTTCATGCTGGTGTGGAGATTCTGATTGTGTCGCGGTCAAAATTTTGC ATGTTACCTTGGGAGGCGCGGGGGCTAGGCATGGGCTGGTAATAAAGCGA TATCCATATGTCTGTAATTCATTTTGTTACCTCTTCGATTGTTGGTGAAA CACGCATGTGGCGGTCAGACGGTCTGTAACGGCGATGTGTTTGTGTGTCA TCGCTGCTCTGTGAATGCCCTTGGCAAACGATGGGGTACACATCATGGAC GTCTTCGCTCCTGAAACAATCTCACTGATAGAAATTGCTTGGTTCTGCAG TACAAAGACCTTCTCTATTTTCGCGGAGAACCGTTCCTTCTCTTTTGTTT TTGGGGGGGAGGGGGGTCGAGTCGGAGTCGCTCCGAACGGGATCGTGATC AATAACAAACGACATACAGCATGATTGTAGCGGGGCACTAGGTACTTCAT CATAGAGTAGAAAAGTGCAATTGTTGTCAGGTAGGAGACGAGGTGACTGT TCAGGATGTATAGGACACCCACCCTCTCCCAACCATCACAAGACTTCTTT GGGGGAAATCGTAAAGCTGCGGTGTCAGTCGCCTCTGATCATCCCTGAAG TGTTTAGTTCATGAAGAAACGCCCGCGACGCTGCGGAGGATGTACGCCAC CGTGTCAGGTTTAACAAGGCTACCTGAGGTCCCTTCTTGTGTGGCGACTG GAAGTGATAAATCTGCCTGACTGAGCCATTTGTTTCCAGCAGGTTTCCGA AAGGTTGGCACAGTACGGACATGTTAGAGAAGGACGATCTTCGAATTCCC CAGAGACCCAACTCCAGCGAGAAATCACCATATACCCTCACATACTAGGC ACAGCAGGCCGAGTACCGCAGAACGCAAAGCAAGCAGCAGGCTGTCTGAG TGTGGTGTACACATCAAAATAACCAACAATATCTCATCACTGGTACCAGA TTTGCATTGCGGGAAGAGAAGGAAGAGTAGGAGCCATTGATCGTGACAGC TGGGGGGCAAAAATTCGACTATTATCTGTGTTTTACGATGAAGCACTCAT CTGTGGGGGTTGAACATCGTGTGCGCTGCTGCTGTACGACACGGTAGTAC TGATTCTGCTGCAGCTTGGGTCGTCGAGCGGTTGTGGGTAATACAGTATG TATATATATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig11588:870..5580+

>mRNA_H-paniculata_contig11588.1019.1 ID=mRNA_H-paniculata_contig11588.1019.1|Name=mRNA_H-paniculata_contig11588.1019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig11588:870..5580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTTCATAACCGGGGCGTCTTTTGTTCTGGCCTACGGCACTGCAGA
CTACGCATTAAGGATGGACTTCATAACCGGGGCGTCTTTTGTTCTGGCCT
ACGGCACTGCAGACTACGCATTAAGGGTGCGGGCGAAGGTACGAACAGGA
GAGCTTGTCCTGGTGCTGGGAGCGTCGGGAGGAGTGGGGTTGGCCGCCGT
CCAGCTCGCAAAGGTGCGGGCGAAGGTACGAACAGGAGAGCTTGTCCTGG
TGCTGGGAGCGTCGGGAGGAGTGGGGTTGGCCGCCGTCCAGCTCGCAAAG
GCGGCCGGAGCTACGGTGATTGCGGCGGCATCGACTCCCGAAAAACTCGA
GACTTGCAGAGATTCGGGAGCCGATTTCTTGCTCAACTACAGAGACCCGA
AGGACAGCAGGGCAGGAAAGAGCCGGGCGGGGAATTGGCGGCAGGCGCTC
AAGAGACTCGTCGGCCCGAGGGGGATCGATGTCGTTCTTGATTCGGTCGG
CGGAGCTGATTGCGAGGCGGCCGGAGCTACGGTGATTGCGGCGGCATCGA
CTCCCGAAAAACTCGAGACTTGCAGAGATTCGGGAGCCGATTTCTTGCTC
AACTACAGAGACCCGAAGGACAGCAGGGCAGGAAAGAGCCGGGCGGGGAA
TTGGCGGCAGGCGCTCAAGAGACTCGTCGGCCCGAGGGGGATCGATGTCG
TTCTTGATTCGGTCGGCGGAGCTGATTGCGAGACAGCACTTCGGAGCATG
GCGGTCGGCGGACGTTACCTGGTGATCGGGTTCGCGTCCGGCACTATACC
GGCGCCCTCGTTGAACCTCGTGTTACTGAAGGAGGTGTGCGTTATCGGCA
TCTTTTGGGGGGCATGGTTAAAAAGGGATCCAGAGGGCAGACAGCACTTC
GGAGCATGGCGGTCGGCGGACGTTACCTGGTGATCGGGTTCGCGTCCGGC
ACTATACCGGCGCCCTCGTTGAACCTCGTGTTACTGAAGGAGGTGTGCGT
TATCGGCATCTTTTGGGGGGCATGGTTAAAAAGGGATCCAGAGGGCAGCG
CTCAACAGCTAAAAGAGCTGGTGCGCCTGTATGGAGAAGGACTAGTACGA
CCCGTCATCAGTCGAGTTTATCCGTTGCACGAGGCTCCGCGGGCGTTGGA
TGATATGGGGGCCCGGCGAGTGGTGGGAAAATTGGTGATAGATTGTTCTG
AAAAGGCGGGGCCTGCGGTGGGGGGAGGGGAGGAGAGCAGGCACGACAGA
ACGGTGGTTTCACGCCTCTAGCGCTCAACAGCTAAAAGAGCTGGTGCGCC
TGTATGGAGAAGGACTAGTACGACCCGTCATCAGTCGAGTTTATCCGTTG
CACGAGGCTCCGCGGGCGTTGGATGATATGGGGGCCCGGCGAGTGGTGGG
AAAATTGGTGATAGATTGTTCTGAAAAGGCGGGGCCTGCGGTGGGGGGAG
GGGAGGAGAGCAGGCACGACAGAACGGTGGTTTCACGCCTCTAG
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