mRNA_H-paniculata_contig11584.1018.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11584.1018.1
Unique NamemRNA_H-paniculata_contig11584.1018.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11584.1018.1 vs. uniprot
Match: D8LH17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH17_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.340e-9
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 VKDRLFDLERSVETAEWTGRKLQRENEGLQALIQRNRKR 117
            VK+RLFDLERSVE AEW+ RKL +ENEGLQ LI RNR+R
Sbjct:  356 VKERLFDLERSVEMAEWSERKLAKENEGLQGLISRNRQR 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11584.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH17_ECTSI6.340e-976.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11584contigH-paniculata_contig11584:564..680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010870.1
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928865.4023056-CDS-H-paniculata_contig11584:563..6801622928865.4023056-CDS-H-paniculata_contig11584:563..680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11584 564..680 +
1691480650.303918-CDS-H-paniculata_contig11584:563..6801691480650.303918-CDS-H-paniculata_contig11584:563..680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11584 564..680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11584.1018.1prot_H-paniculata_contig11584.1018.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11584 564..680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11584.1018.1

>prot_H-paniculata_contig11584.1018.1 ID=prot_H-paniculata_contig11584.1018.1|Name=mRNA_H-paniculata_contig11584.1018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
VKDRLFDLERSVETAEWTGRKLQRENEGLQALIQRNRKR
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mRNA from alignment at H-paniculata_contig11584:564..680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11584.1018.1 ID=mRNA_H-paniculata_contig11584.1018.1|Name=mRNA_H-paniculata_contig11584.1018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig11584:564..680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACCGACTGTTCGACCTGGAACGTTCCGTGGAAACTGCGGAGTG
GACGGGACGCAAGCTGCAGAGAGAGAACGAGGGGCTTCAAGCCTTGATAC
AGCGAAACAGGAAGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11584:564..680+

>mRNA_H-paniculata_contig11584.1018.1 ID=mRNA_H-paniculata_contig11584.1018.1|Name=mRNA_H-paniculata_contig11584.1018.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig11584:564..680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAGACCGACTGTTCGACCTGGAACGTTCCGTGGAAACTGCGGAGTG
GACGGGACGCAAGCTGCAGAGAGAGAACGAGGGGCTTCAAGCCTTGATAC
AGCGAAACAGGAAGAGGGTGAAAGACCGACTGTTCGACCTGGAACGTTCC
GTGGAAACTGCGGAGTGGACGGGACGCAAGCTGCAGAGAGAGAACGAGGG
GCTTCAAGCCTTGATACAGCGAAACAGGAAGAGG
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