mRNA_H-paniculata_contig1158.1014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1158.1014.1
Unique NamemRNA_H-paniculata_contig1158.1014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1158.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1158contigH-paniculata_contig1158:8615..8818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size186
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928864.666726-UTR-H-paniculata_contig1158:8614..86321622928864.666726-UTR-H-paniculata_contig1158:8614..8632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1158 8615..8632 +
1691480649.9711115-UTR-H-paniculata_contig1158:8614..86321691480649.9711115-UTR-H-paniculata_contig1158:8614..8632Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1158 8615..8632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928864.6798735-CDS-H-paniculata_contig1158:8632..88181622928864.6798735-CDS-H-paniculata_contig1158:8632..8818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 8633..8818 +
1691480649.9798813-CDS-H-paniculata_contig1158:8632..88181691480649.9798813-CDS-H-paniculata_contig1158:8632..8818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 8633..8818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1158.1014.1prot_H-paniculata_contig1158.1014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1158 8633..8818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1158.1014.1

>prot_H-paniculata_contig1158.1014.1 ID=prot_H-paniculata_contig1158.1014.1|Name=mRNA_H-paniculata_contig1158.1014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MMEEAAALDASLEADGAAMIEEERARQVLAVAADSSPQKEIARIREKHMH
SLVSHLPLRGL*
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mRNA from alignment at H-paniculata_contig1158:8615..8818+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1158.1014.1 ID=mRNA_H-paniculata_contig1158.1014.1|Name=mRNA_H-paniculata_contig1158.1014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig1158:8615..8818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAAGAGGACGTACGTATGATGGAAGAGGCTGCCGCGCTGGATGCTTC
TCTTGAAGCAGATGGAGCAGCAATGATTGAAGAGGAGCGAGCGAGGCAGG
TGCTGGCCGTTGCTGCGGATTCCAGCCCACAGAAAGAAATTGCGAGGATC
CGTGAAAAACATATGCACTCCCTGGTGAGCCATTTGCCATTGAGAGGGTT
GTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1158:8615..8818+

>mRNA_H-paniculata_contig1158.1014.1 ID=mRNA_H-paniculata_contig1158.1014.1|Name=mRNA_H-paniculata_contig1158.1014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig1158:8615..8818+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGAAGAGGCTGCCGCGCTGGATGCTTCTCTTGAAGCAGATGGAGC
AGCAATGATTGAAGAGGAGCGAGCGAGGCAGGTGCTGGCCGTTGCTGCGG
ATTCCAGCCCACAGAAAGAAATTGCGAGGATCCGTGAAAAACATATGCAC
TCCCTGGTGAGCCATTTGCCATTGAGAGGGTTGTAGATGATGGAAGAGGC
TGCCGCGCTGGATGCTTCTCTTGAAGCAGATGGAGCAGCAATGATTGAAG
AGGAGCGAGCGAGGCAGGTGCTGGCCGTTGCTGCGGATTCCAGCCCACAG
AAAGAAATTGCGAGGATCCGTGAAAAACATATGCACTCCCTGGTGAGCCA
TTTGCCATTGAGAGGGTTGTAG
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