mRNA_H-paniculata_contig1158.1012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1158.1012.1
Unique NamemRNA_H-paniculata_contig1158.1012.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1158.1012.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.680e-18
Identity = 52/96 (54.17%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:    1 QKRKLQSELTQSGATAEEKEAIIGAMEKDQRLIESVLEAERLRVEEGIKAVVASRKARDEKEAKDDAEQEGALRGTTKEELLNQQSAQIEEMRRKH 288
            QKR LQ +L  +GAT EEK+A++ A+ +DQ+ IE +LE ER+R+EE  K+  A+RKARDEK A++DA +E      TK ELL++Q+AQI+E+RRKH
Sbjct: 4488 QKRSLQEQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAAARKARDEKHAEEDAVEECQ----TKAELLHKQNAQIKELRRKH 4579
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BLAST of mRNA_H-paniculata_contig1158.1012.1 vs. uniprot
Match: A0A6H5KWQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-17
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:    1 QKRKLQSELTQSGATAEEKEAIIGAMEKDQRLIESVLEAERLRVEEGIKAVVASRKARDEKEAKDDAEQEGALRGTTKEELLNQQSAQIEEMRRKH 288
            QKR LQ +L  +GAT EEK+A++ A+ +DQ+ IE +LE ER+R+EE  K+   +RKARDEK A++DA +E      TK ELL++Q+AQI+E+RRKH
Sbjct:  880 QKRSLQKQLDNAGATVEEKQAMMNALTEDQKTIEGILEGERVRMEESFKSAAVARKARDEKHAEEDAVEECQ----TKAELLHKQNAQIKELRRKH 971
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1158.1012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR26_ECTSI3.680e-1854.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWQ4_9PHAE1.270e-1753.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1158contigH-paniculata_contig1158:1189..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog2880.D8LR26
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons3
Model size289
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1158.1012.1prot_H-paniculata_contig1158.1012.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1158 1189..2041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928864.4684315-CDS-H-paniculata_contig1158:1188..12481622928864.4684315-CDS-H-paniculata_contig1158:1188..1248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 1189..1248 +
1691480649.8661652-CDS-H-paniculata_contig1158:1188..12481691480649.8661652-CDS-H-paniculata_contig1158:1188..1248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 1189..1248 +
1622928864.4880817-CDS-H-paniculata_contig1158:1529..16901622928864.4880817-CDS-H-paniculata_contig1158:1529..1690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 1530..1690 +
1691480649.8785164-CDS-H-paniculata_contig1158:1529..16901691480649.8785164-CDS-H-paniculata_contig1158:1529..1690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 1530..1690 +
1622928864.5032876-CDS-H-paniculata_contig1158:1974..20411622928864.5032876-CDS-H-paniculata_contig1158:1974..2041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 1975..2041 +
1691480649.8862352-CDS-H-paniculata_contig1158:1974..20411691480649.8862352-CDS-H-paniculata_contig1158:1974..2041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1158 1975..2041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1158.1012.1

>prot_H-paniculata_contig1158.1012.1 ID=prot_H-paniculata_contig1158.1012.1|Name=mRNA_H-paniculata_contig1158.1012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
QKRKLQSELTQSGATAEEKEAIIGAMEKDQRLIESVLEAERLRVEEGIKA
VVASRKARDEKEAKDDAEQEGALRGTTKEELLNQQSAQIEEMRRKH
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mRNA from alignment at H-paniculata_contig1158:1189..2042+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1158.1012.1 ID=mRNA_H-paniculata_contig1158.1012.1|Name=mRNA_H-paniculata_contig1158.1012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=854bp|location=Sequence derived from alignment at H-paniculata_contig1158:1189..2042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAAAGGAAATTACAGAGTGAACTTACTCAGAGCGGGGCTACAGCGGA
GGAAAAAGAGGTGTCGCCCTGACGATAGAAGCTTTGCCGCGGGGTGGGGT
AGAAGCGGAGGACGCGACGTTGTTCTGTTTTTACCGTATTGCTATTGTCT
TTGTTGTTGTTAATGTCTTGGATCGCCTCGTTGCGACAACACCGTTCGCA
TACCTCGTCATATTGCGCATGTAGTACTTACCACTGCAACACTGAAACAA
CATTCACCGGTGATGCTCAAGAGCAGTTTTCAAGCATCCTATCCAACACT
GGAATCCCCTTGTATGAACATGTCTGATTCGTACAACCAAGGCCATTATT
GGTGCGATGGAGAAAGACCAACGATTAATCGAGAGTGTCCTCGAAGCGGA
GCGCTTACGAGTAGAGGAAGGCATCAAAGCCGTTGTCGCATCGCGCAAGG
CGAGGGATGAGAAAGAAGCGAAAGACGATGCTGAGCAGGAGGGAGCGTTA
AGGTGCAGTAGTCGTCGTAATGGACGTATTGAAAATAATTTGAAAACACA
TACTTTCGAACAGGTGCTACCGTCAAAAATTGTACATGTACGTGCGTCTA
TCCCGAAATTGGATTTATTTGTGAATTCAGCTTTCTTAGGACCAAGGTGG
CTGTTATCCGTAGTTGATAATGTTTCGCCTATTATGATCAAGTTGGTTGA
TGATATAGACTGGCTCGATGCCTGTGGAAAGGCTTGCCCTCACGTGGCAT
GTCGTACCTTTCGGTGCTGAAACGATTCTTCCACAGGGGAACCACCAAGG
AGGAACTTCTCAATCAGCAGTCGGCGCAAATAGAGGAAATGCGACGGAAG
CACG
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Coding sequence (CDS) from alignment at H-paniculata_contig1158:1189..2042+

>mRNA_H-paniculata_contig1158.1012.1 ID=mRNA_H-paniculata_contig1158.1012.1|Name=mRNA_H-paniculata_contig1158.1012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig1158:1189..2042+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAAAAGGAAATTACAGAGTGAACTTACTCAGAGCGGGGCTACAGCGGA
GGAAAAAGAGCAAAAAAGGAAATTACAGAGTGAACTTACTCAGAGCGGGG
CTACAGCGGAGGAAAAAGAGGCCATTATTGGTGCGATGGAGAAAGACCAA
CGATTAATCGAGAGTGTCCTCGAAGCGGAGCGCTTACGAGTAGAGGAAGG
CATCAAAGCCGTTGTCGCATCGCGCAAGGCGAGGGATGAGAAAGAAGCGA
AAGACGATGCTGAGCAGGAGGGAGCGTTAAGGCCATTATTGGTGCGATGG
AGAAAGACCAACGATTAATCGAGAGTGTCCTCGAAGCGGAGCGCTTACGA
GTAGAGGAAGGCATCAAAGCCGTTGTCGCATCGCGCAAGGCGAGGGATGA
GAAAGAAGCGAAAGACGATGCTGAGCAGGAGGGAGCGTTAAGGGGAACCA
CCAAGGAGGAACTTCTCAATCAGCAGTCGGCGCAAATAGAGGAAATGCGA
CGGAAGCACGGGAACCACCAAGGAGGAACTTCTCAATCAGCAGTCGGCGC
AAATAGAGGAAATGCGACGGAAGCAC
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