mRNA_H-paniculata_contig11565.1002.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: D8LST7_ECTSI (Putative type II topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST7_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.310e-61 Identity = 99/133 (74.44%), Postives = 110/133 (82.71%), Query Frame = 1 Query: 4 AAIVPSASLRLCDGFDIVR-KGRGRGRQLMVMPGTLGIGG--VGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 AAI PS++LR CDG ++V+ K RGRGRQLMV+PG LG+G GGKLGTL N T +PVLYMEFP+GRLKCTGRTVH KGRFFTLYADK +ATRMDCRDVFDS VFFS ACWVGK+EDNP EE LPLPE L Sbjct: 67 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGALGLGNGSTGGKLGTLNNATPANPVLYMEFPEGRLKCTGRTVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESL 199
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: A0A6H5JPN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN3_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.510e-59 Identity = 96/133 (72.18%), Postives = 108/133 (81.20%), Query Frame = 1 Query: 4 AAIVPSASLRLCDGFDIVR-KGRGRGRQLMVMPGTLGIGG--VGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 AAI PS++LR CDG ++V+ K RGRGRQLMV+PG LG+G GGKLGTL N +PVLY+EFP+GRLKCTGR VH KGRFFTLYADK +ATRMDCRDVFDS VFFS ACWVGK+EDNP EE LPLPE L Sbjct: 78 AAIAPSSTLRQCDGLNVVKNKARGRGRQLMVLPGVLGLGNGSTGGKLGTLNNAAPANPVLYVEFPEGRLKCTGRMVHAKGRFFTLYADKAAGRATRMDCRDVFDSAVFFSKACWVGKKEDNPSEEPLPLPESL 210
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: A0A453TDM3_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TDM3_AEGTS) HSP 1 Score: 105 bits (262), Expect = 8.540e-26 Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 1 Query: 4 AAIVPSASLRLCDGFDIVR-KGRGRGRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 AA+ PS ++ G DIVR +G+ RGR L PG L GG++G L ++ T +PVLY+EFPQGR+K G V+ K ++ TL ++ A + C DVF+S++ FS + WVG +E+NP E L P+++ Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGLLAPAAAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRS---AKGVACEDVFESMIVFSESWWVGTKEENPDELKLEFPKEM 172
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: A0A453TD59_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453TD59_AEGTS) HSP 1 Score: 106 bits (264), Expect = 9.220e-26 Identity = 56/131 (42.75%), Postives = 82/131 (62.60%), Query Frame = 1 Query: 4 AAIVPSASLRLCDGFDIVR-KGRGRGRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 AA+ PS ++ G DIVR +G+ RGR L PG L GG++G L ++ T +PVLY+EFPQGR+K G V+ K ++ TL ++ A + C DVF+S+V FS + WVG +E+NP E L P+++ Sbjct: 45 AALPPSGAVARLQGRDIVRPRGQRRGRFLFSFPGLLAPAAAGGRVGELADLGTKNPVLYLEFPQGRMKLLGTHVYPKNKYLTLQMTRS---AKGVACEDVFESMVLFSESWWVGTKEENPDELKLEFPKEM 172
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: UPI0009E3B71A (DNA-binding protein RHL1 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E3B71A) HSP 1 Score: 107 bits (268), Expect = 2.380e-25 Identity = 55/126 (43.65%), Postives = 80/126 (63.49%), Query Frame = 1 Query: 16 PSASLRLCDGFDIVRKGRGRGRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 PS ++ G DIV++G+ + R L PG + GGK+G L N+ T +PVLY+EFPQGR+K G V+ K ++ TL K+ A + C DVF+S++ FS A W+GK+E+NP+E L P+DL Sbjct: 45 PSKAIVKLQGRDIVKRGQRKSRYLFSFPGLIAPLS-GGKIGVLSNLATKNPVLYLEFPQGRMKLFGTHVYPKNKYLTLQPTKS---AKGVMCEDVFESLIVFSDAWWIGKKEENPEEYQLEYPKDL 166
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: A0A2U1QE55_ARTAN (ARC6-like protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QE55_ARTAN) HSP 1 Score: 108 bits (271), Expect = 5.200e-25 Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 16 PSASLRLCDGFDIVRKGRGRGRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 PS ++ +G D++RK + R L PG +G G GGK+G L+++ + +PVLY+EFPQGR+K G V+ K R+ TL K G T C D FD+++ FS A W+G +E+NP+E L PE++ Sbjct: 54 PSKTVAKHNGRDLLRKSNRKNRFLFSFPGLIGPVGSGGKIGELKDLGSKNPVLYLEFPQGRMKLFGTIVYPKNRYLTLQFSKGGKNVT---CDDYFDNMIVFSDAWWIGTKEENPEETQLSFPENM 176
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: A0A811S6P0_9POAL (Hypothetical protein n=2 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811S6P0_9POAL) HSP 1 Score: 107 bits (267), Expect = 6.600e-25 Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 1 Query: 4 AAIVPSASLRLCDGFDIVRKGRGR-GRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 A + PS ++ G D+VR+G R R L PG L GG++G L ++ T +PVLY+EFPQGR+K G V+ K ++ TL ++ A + C DVF+S++ FS ACWVG +EDNP+E L P++ Sbjct: 41 APLAPSGAVTRLQGRDVVRRGGQRKSRYLFSFPGLLAPAASGGRIGELADLGTKNPVLYLEFPQGRMKLFGTHVYPKNKYLTLQMTRS---AKGVVCEDVFESLIVFSEACWVGTKEDNPEELKLEFPKEF 168
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: W7TM28_9STRA (Dna-binding protein rhl1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM28_9STRA) HSP 1 Score: 103 bits (257), Expect = 6.650e-25 Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 1 AAAIVPSA----SLRLCDGFDIVRKGRGRGRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 AA +VPS+ LR DG DIVRKG + R + ++P + I GGKLGT+ + T +PVLY++FPQGR+KC GR V + R L + S + C+D+ +++V FS W+G ++NP+E+ P P+++ Sbjct: 41 AAKLVPSSIRVKDLRRWDGCDIVRKGAKKTRYVFLLPAIMTITQAGGKLGTIALMDTETPVLYLDFPQGRMKCQGRIVRPEVRLLPLAFEGKRS----VTCKDLVNTLVVFSKVWWIGTEKENPEEKPWPFPKEM 171
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: D8RIE0_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RIE0_SELML) HSP 1 Score: 105 bits (261), Expect = 6.930e-25 Identity = 54/128 (42.19%), Postives = 83/128 (64.84%), Query Frame = 1 Query: 10 IVPSASLRLCDGFDIVRKGRGRGRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 ++PS L CDG DIV+KG + + L PG + GGK G L ++ T +P+LY++FP+GR+K G V+ K ++ TL K GSK+ + C DV +S+V FS + W+G +E+NP+E+ L +P+DL Sbjct: 42 LLPSKELLKCDGKDIVKKGTRKSKFLFSFPGLVAPV-AGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTK-GSKS--VICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Match: D8REU9_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8REU9_SELML) HSP 1 Score: 105 bits (261), Expect = 8.460e-25 Identity = 54/128 (42.19%), Postives = 83/128 (64.84%), Query Frame = 1 Query: 10 IVPSASLRLCDGFDIVRKGRGRGRQLMVMPGTLGIGGVGGKLGTLENVTTTSPVLYMEFPQGRLKCTGRTVHTKGRFFTLYADKTGSKATRMDCRDVFDSIVFFSSACWVGKREDNPKEEALPLPEDL 393 ++PS L CDG DIV+KG + + L PG + GGK G L ++ T +P+LY++FP+GR+K G V+ K ++ TL K GSK+ + C DV +S+V FS + W+G +E+NP+E+ L +P+DL Sbjct: 42 LLPSKELLKCDGKDIVKKGTRKSKFLFSFPGLVAPV-AGGKFGDLAHLDTKNPILYVDFPKGRIKLFGTIVYPKNKYLTLQLTK-GSKS--VICDDVIESLVVFSESWWIGTKEENPEEKKLDMPKDL 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11565.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11565.1002.1 >prot_H-paniculata_contig11565.1002.1 ID=prot_H-paniculata_contig11565.1002.1|Name=mRNA_H-paniculata_contig11565.1002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp AAAIVPSASLRLCDGFDIVRKGRGRGRQLMVMPGTLGIGGVGGKLGTLENback to top mRNA from alignment at H-paniculata_contig11565:1168..2092- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11565.1002.1 ID=mRNA_H-paniculata_contig11565.1002.1|Name=mRNA_H-paniculata_contig11565.1002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=925bp|location=Sequence derived from alignment at H-paniculata_contig11565:1168..2092- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11565:1168..2092- >mRNA_H-paniculata_contig11565.1002.1 ID=mRNA_H-paniculata_contig11565.1002.1|Name=mRNA_H-paniculata_contig11565.1002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig11565:1168..2092- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |