mRNA_H-paniculata_contig115.966.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig115.966.1
Unique NamemRNA_H-paniculata_contig115.966.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig115.966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig115contigH-paniculata_contig115:45941..49314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.2481937-CDS-H-paniculata_contig115:45942..463251622928855.2481937-CDS-H-paniculata_contig115:45942..46325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig115 45943..46325 -
1691480646.4459612-CDS-H-paniculata_contig115:45942..463251691480646.4459612-CDS-H-paniculata_contig115:45942..46325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig115 45943..46325 -
1622928855.2606275-CDS-H-paniculata_contig115:49142..493141622928855.2606275-CDS-H-paniculata_contig115:49142..49314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig115 49143..49314 -
1691480646.4536643-CDS-H-paniculata_contig115:49142..493141691480646.4536643-CDS-H-paniculata_contig115:49142..49314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig115 49143..49314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig115.966.1prot_H-paniculata_contig115.966.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig115 45943..49314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig115.966.1

>prot_H-paniculata_contig115.966.1 ID=prot_H-paniculata_contig115.966.1|Name=mRNA_H-paniculata_contig115.966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
IHEVQTRSLYDRYRGDGRARGRGRGSDGGHGVSTEEAIRGSQRRGGGRRR
QGEVQVEGAGGAQSGGESPMIGPLPPPPPPPPSLPLEREAQEHGEGHEPP
AEAAAAARRQAMMDVDIDDLDDLGGGDDDDAEGEAEAAEMRRAARKLAQA
GAVAGAVPVPVPVPAVETASEPQGREGEEAREGQK
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mRNA from alignment at H-paniculata_contig115:45941..49314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig115.966.1 ID=mRNA_H-paniculata_contig115.966.1|Name=mRNA_H-paniculata_contig115.966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3374bp|location=Sequence derived from alignment at H-paniculata_contig115:45941..49314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCATGAAGTGCAGACCCGGTCGCTTTACGACCGGTACCGTGGCGATGG
GCGTGCGCGGGGACGGGGGCGGGGGAGTGACGGCGGACATGGAGTTTCAA
CAGAAGAGGCGATACGAGGTAGTCAGCGAAGAGGGGGAGGACGCCGGCGG
CAAGGCGAAGTCCAAGTCGAAGGTGGGCAGATATAGCAACAGAGGAAATC
GAGTTAAACGGTCGCGTGTGTGAGTGGGACTACAGTAGGTACGGGGTGGA
GGAGGGCAATAAACTTTGAATATAATGGAGGTATGTTGAGCACCTTCAAG
CTGCTGGACTACTGGGTCATTGTCCACAAACTGAACGGACTTAGAGAGGG
GGGGGTTCGAGCCGATATTTTGACTTTTGGGTCGCTTTGCGGAGTGGCTG
GGTTAATGTGTATATATTTCCCTCCTCGAACAGCACGGTCATTCTGAATC
GTGCGTTGTGCACCTCTAGGGATACGTTCAAGCATGTAATTAATTACTTT
TTTTTTCTTTTTTATCGCTTTGCAGAGCGACGCTTGTTCAACATCCCTCC
CCCCCCCTCCCCATCAGAGCCCTATTCATGTCGTGGATAATCAAATGTTC
TCTTGAAAGGACACAAGAAATTTTGGGAATACGGGTTGGAATTGTGTCAG
GTGTTTTGGTTGCCGGGGGGCGGGGGTGGGGGCGGGAGGGGGGGGGTGAA
TAGAATGAAAAGCAGACGGCATGTGAAAAAAAGAAAACTAGTTTCGCGTG
GTGCAAAATGTCTACTTGTTTTGTTTTGTTTTCTATTTCGATGTTTGTTG
TTTCAGGTTTTGTACATTCCATTTGTTTTTTATGCAATTTTTCCCTCTTT
CTGTTGCGCTTGGGACGTTTGAAGTGGTTGAAATGCAGTGAAATTTGGTT
GGCCGGTGTGAAGTTTTGGAGATGGTGTAGTGAATCATGTTGAGTGCTAG
CTCAAGAGCGTTCTTTCTCGAGTCTGCTCTCCCAAAACGTTGGTCGGTGC
ACAAAATCATTGATTTACAAAGTCTCCTGGTTTGTATGTTGCCGAGTCCG
CCCAAAAGTATGATCGGAATTGACGTTGATCTGAATTATGAATAATTGGC
GAAGCTATCCCAGGAGGTTTTAATCCCGAAAAATAAATGGTGTCACTTCA
CGTGGCGGAGCGTAAATCCCCTAGTGGGCTCTCAAAACATGTAGGGGACG
ATTTTTTGCGGGCCCAATTTTCTCGGTAACGAAGTCTATGTGCATCAGAA
AGGGCATGCCGATTGACCGATCTCGATGATATCTCGTCAATGATATATCT
TAAACAGTCTAGTTTTCGAGAAGATCAGATCTAAAAAAAAATGCTCCCTG
GGGGCGTTCCGAGAGCCCTACATGGGTAACCCGTGCCATCTCGCGATGAA
TTACTGGGCGTTAGCGCCGTGAAAGCTTCCTACAATCGACAGCCGCTTGT
CTGAGATTCTTGATAGCCCATCGAGAGGGTACAATAGGTGGACACCGCTA
AATAGTATGCGTTGCTATCCACTCTACCGCACGTACAATGGGGGATCTTC
TTGAACATTTGTTGATTTAAGAACATGTAAGATGTTTGTCAAGAATTTTT
TTTCAAGAGCAGATCTGCGCACACCATGGCCGATCTGTTTCTGGGCACCC
AGATGTGTCTGCTCTTTAACACTTGTTTGGAACGCCTGTAAAATTGCCGA
TTTTCAAGACGAATCAGATGTAAATCTTGCACACGTCCGACGGATCATGA
TCCGTCCATCACTAGAAAGAGGACTTATCAGACACCGTTGGTCCGAGAAA
ACCAAAATAATGTGACCTCGGGTCAGAGAAGTCCAAGTATATTTTTGCGT
TACTCTTTGTACTCTGCTTCCAGCGCTGTGGGGAGTGAAGCTCGGAACAG
GGCCCGAGGAGCCGTGAGTCGTGTAGGGATCGCGTACACACTTTAACAAA
GAGCAATCGGCCAGACGGATCATGATCCGTCCGACGTGCGAAATTTTCAT
CGATGTGTCCATCAGTACTGTGTCCCAAAGGGTTTATTGACTCTTGCATG
TTTCTTTTCAGAATATCGAACAGTGTTCGGGATATTCAATCAGAACATTT
TTTTTAATATATATATTAAAAACACTGAACATAGTCAAACATCTTGAAAA
CGGGGTACAATAGAACATGTTGAAGAGATGAACAGAGCAAGAAAAACACC
TCGAGACAAAAAGCACCTGATTATGTTCTGTCGGACATCAAGAACTTTCG
AACAGAGCGAATTTCAAAATTCGTGCTATTTCTGTGGATCGCTTTGCCGT
CGCCAAAGCCAGCGGATCGCATTCTATTTTCTTATAGGATGCCATGGTCC
TCTAGAGTGCGCTCTGTTACCTCTGTTGTTTGGTTGACCATGCAAACGAC
CACTGGTGTGCTCCTGTTTCGTTACTGTGAACCCCATACGGTTCTCTCTC
ACCCATAGGGTACTCCAGTTTGGATACATGGCTGAATTGTCTATAGTTGA
AATGCCCTCGAACTGCAAAATATTTGGATGATGGATTAAAGTAACACTGC
GAAGTCAGCTTGCAATGCTACACTAAAGAGCCGAACGTAAACTTTTTCGA
CTTTTTTGTACCGTTTTATGTGATAAACATGTATATAAATGTGATAAATG
CAAGCCAGTCAGTAGGAATGTGATCTTGTATCAGAAGAATAGTTACAGTA
AAGACCCAGTGTGTGTACAAGAAGCCCCGAAAGACGTACGTCCTAGATTT
GAGGAAAGCAAAAAGCTCCCAATACATGAACCCACATCCTAGAAGGAGCC
CGCAATCAATACGTGCGCATTTCTAGCTTGCGACGAGAACAAATAACAAA
CGCAGCAAGCCTGGTGTACGAGGCGAGGCGTAACGGCCCTCCTGTCCCGT
AAAGCACTCCTAATAAATCAATTCGTACCCACAAAAATTACCAACTAACG
ACTTCGTACCCTCCTGCCCCCTCCCTCCGACATGATCAGGTGCAGGCGGA
GCTCAAAGCGGCGGTGAATCCCCAATGATAGGGCCGTTACCACCACCGCC
ACCACCACCGCCCTCGCTGCCGCTCGAAAGAGAGGCGCAAGAGCATGGCG
AAGGTCACGAACCCCCGGCCGAGGCGGCGGCGGCAGCCAGACGACAAGCC
ATGATGGACGTCGATATCGATGATCTGGACGATCTCGGGGGAGGAGACGA
TGACGACGCGGAGGGAGAAGCGGAAGCCGCCGAAATGAGACGTGCGGCAA
GAAAGCTGGCCCAGGCAGGGGCAGTGGCGGGAGCGGTGCCGGTGCCGGTG
CCAGTGCCGGCGGTGGAGACCGCGAGTGAACCGCAAGGACGAGAGGGAGA
GGAAGCTCGAGAGGGCCAGAAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig115:45941..49314-

>mRNA_H-paniculata_contig115.966.1 ID=mRNA_H-paniculata_contig115.966.1|Name=mRNA_H-paniculata_contig115.966.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig115:45941..49314- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCATGAAGTGCAGACCCGGTCGCTTTACGACCGGTACCGTGGCGATGG
GCGTGCGCGGGGACGGGGGCGGGGGAGTGACGGCGGACATGGAGTTTCAA
CAGAAGAGGCGATACGAGGTAGTCAGCGAAGAGGGGGAGGACGCCGGCGG
CAAGGCGAAGTCCAAGTCGAAGATTCATGAAGTGCAGACCCGGTCGCTTT
ACGACCGGTACCGTGGCGATGGGCGTGCGCGGGGACGGGGGCGGGGGAGT
GACGGCGGACATGGAGTTTCAACAGAAGAGGCGATACGAGGTAGTCAGCG
AAGAGGGGGAGGACGCCGGCGGCAAGGCGAAGTCCAAGTCGAAGGTGCAG
GCGGAGCTCAAAGCGGCGGTGAATCCCCAATGATAGGGCCGTTACCACCA
CCGCCACCACCACCGCCCTCGCTGCCGCTCGAAAGAGAGGCGCAAGAGCA
TGGCGAAGGTCACGAACCCCCGGCCGAGGCGGCGGCGGCAGCCAGACGAC
AAGCCATGATGGACGTCGATATCGATGATCTGGACGATCTCGGGGGAGGA
GACGATGACGACGCGGAGGGAGAAGCGGAAGCCGCCGAAATGAGACGTGC
GGCAAGAAAGCTGGCCCAGGCAGGGGCAGTGGCGGGAGCGGTGCCGGTGC
CGGTGCCAGTGCCGGCGGTGGAGACCGCGAGTGAACCGCAAGGACGAGAG
GGAGAGGAAGCTCGAGAGGGCCAGAAGGTGCAGGCGGAGCTCAAAGCGGC
GGTGAATCCCCAATGATAGGGCCGTTACCACCACCGCCACCACCACCGCC
CTCGCTGCCGCTCGAAAGAGAGGCGCAAGAGCATGGCGAAGGTCACGAAC
CCCCGGCCGAGGCGGCGGCGGCAGCCAGACGACAAGCCATGATGGACGTC
GATATCGATGATCTGGACGATCTCGGGGGAGGAGACGATGACGACGCGGA
GGGAGAAGCGGAAGCCGCCGAAATGAGACGTGCGGCAAGAAAGCTGGCCC
AGGCAGGGGCAGTGGCGGGAGCGGTGCCGGTGCCGGTGCCAGTGCCGGCG
GTGGAGACCGCGAGTGAACCGCAAGGACGAGAGGGAGAGGAAGCTCGAGA
GGGCCAGAAG
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