mRNA_H-paniculata_contig11473.957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A6H5JAY4_9PHAE (C3H1-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY4_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.350e-32 Identity = 76/162 (46.91%), Postives = 101/162 (62.35%), Query Frame = 1 Query: 4 RLVSIVGEGVPVDKREEGGHLTAEMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKPNKVRIIHDLTFTQHKKT-DSVNSQTDFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFG 486 +L+ + G PVD GG+L AE+ GNH SA H + D+V D+ GRAL+F + I G+R+SPLGV+ KP K RIIHDLTFT SVN TDF QAP C LGHV +L +L LR+ G + IL+ ++DVK+AF QIP++ + A+ FG Sbjct: 652 QLLRSLSPGAPVDVGL-GGNLDAEVAYGNHPSALLHRDRITDKVVSDVILGRALVFDVRFIREILGVRVSPLGVIDKP-KFRIIHDLTFTSGVPIRTSVNHDTDFDQAPECLLGHVLSDILKRVLYLRQVHGVSLEILICRIDVKEAFRQIPVDPSRASVFG 811
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A2P4XJC0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJC0_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 6.890e-14 Identity = 48/156 (30.77%), Postives = 78/156 (50.00%), Query Frame = 1 Query: 76 MRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKP----NKVRIIHDLTFTQHKKTDSVNSQTDFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531 +R NHT+ + P V + + K+GR L+ +A + ISPLGVV K + VR+I+D +F + ++ F + GH+ + L ++ P RIL+ DV AF +PINAN+A F +++ +FL+ID+ F Sbjct: 122 VRPPNHTTLSTYLPQVWRHIRKGQKDGRYLVLHASLADKWGEVFISPLGVVAKSGGDGHDVRLINDYSFPDKAAVNDYTDRSHFPEITYNPPGHIANRIFTL-----RRDHPNVRILMMLGDVAGAFRHVPINANHAHMFAFIVGEFLVIDMSCGF 272
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A6A3I0G4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3I0G4_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.030e-13 Identity = 51/160 (31.87%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 73 EMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVK----PNKVRIIHDLTFTQHKKTDSVNSQTDFKQA---PPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531 + R GNH + + H P V + + K GR L+ L +A + ISP+GVV K P +R+I+D +F + + ++ F + PP ++ I ALR+ P +RIL+ DV AF +P++A +A F +VI ++L+IDL F Sbjct: 18 DHRPGNHGTINDHLPQVWRHIRKGQKEGRYLVVHLRLADQWKEVFISPIGVVAKVDTNPPDIRLINDYSFPEGGAVNDFTDRSHFPEITYNPPGDIAR-------RIFALRRDH-PYARILMMVGDVAGAFRHVPVHAEHAHMFAFVIGEYLVIDLSCGF 169
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: G4YS29_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YS29_PHYSP) HSP 1 Score: 69.3 bits (168), Expect = 1.290e-10 Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 79 RCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKPNK-VRIIHDLTFTQHKKTDSVNSQTD------FKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531 R NH+S D H V + + +GR L+ + + +SP+GVV K +R+I D +F + S+N TD K PP ++ I+ LR+++ P RILL DV AF +P++A++A F +V+ ++L++DL F Sbjct: 94 RPRNHSSIDEHLSQVWAHIRKGQADGRYLVVRASLLDQWHDIFLSPIGVVAKDGTDIRVIDDYSFPEGS---SINDFTDRSHLPAIKYNPPADIAR-------RIVELRREY-PDIRILLMLGDVAGAFRHVPVSADHAHMFAFVLGEYLVVDLACGF 240
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: K0RL26_THAOC (Uncharacterized protein n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL26_THAOC) HSP 1 Score: 60.5 bits (145), Expect = 1.770e-7 Identity = 41/145 (28.28%), Postives = 69/145 (47.59%), Query Frame = 1 Query: 64 LTAEMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVK-PNKVRIIHDLTFTQHKKTDSVNSQT-DFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYV 492 ++ + G H S + + D+ ++ G+ +I P A +PGLRISP GVV + + R+I D TF+ VN +T + GH +L I+ +GP + I K+D+ D F++I ++A + G V Sbjct: 81 ISQALARGAHQSCMAYVDFLCDEFVDMIQKGQFVILPASEALKLPGLRISPPGVVPQHERRPRMIVDYTFS------GVNDETLPLAPVDAMQFGHALDRILREIMMADPAYGPVNLI---KVDLSDGFYRIGLSAGDMPKLGLV 216
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: K0S3Z5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3Z5_THAOC) HSP 1 Score: 59.3 bits (142), Expect = 4.570e-7 Identity = 40/145 (27.59%), Postives = 67/145 (46.21%), Query Frame = 1 Query: 58 GHLTAEMRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVV-KPNKVRIIHDLTFTQHKKTDSVNSQT-DFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFG 486 G + A + G H S D + + ++ + G+ ++ P +PGLRISP GVV + + R I D +F++ VN +T + GH +L IL GP + L K+D+ D F++I +N ++ G Sbjct: 854 GRVDAALERGPHKSCDDYHEFLAEEFTDMINKGQWVVLPASAVKHMPGLRISPPGVVPQRDRRPRWIVDYSFSE------VNKETLPLAAMEAMQFGHALDRILREILLADPALGP---VQLMKVDISDGFYRINLNIDDIPKLG 989
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: A0A6A3HDV2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HDV2_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.150e-6 Identity = 36/112 (32.14%), Postives = 62/112 (55.36%), Query Frame = 1 Query: 208 ISPLGVVVKPNK-VRIIHDLTFTQHKKTDSVNSQTDFKQA---PPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYVIDKFLIIDLRLQF 531 ISP+GVV K +R+I+D + + +++T+ PP ++ I LR+ + P +RILL DV AFW +PI+A++A F +V++++L++DL F Sbjct: 6 ISPIGVVEKDGTDIRVINDYSCPAGASINDYSNRTNLPVITYNPPGDIAR-------RIFTLRQDY-PDARILLMLGDVAGAFWHVPISADDAHMFAFVLEEYLVVDLACGF 109
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Match: K0S7V5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S7V5_THAOC) HSP 1 Score: 55.8 bits (133), Expect = 6.130e-6 Identity = 37/141 (26.24%), Postives = 67/141 (47.52%), Query Frame = 1 Query: 76 MRCGNHTSADRHTPLVLDQVHQDLKNGRALIFPLEMATSIPGLRISPLGVVVKPNK-VRIIHDLTFTQHKKTDSVNSQT-DFKQAPPCELGHVFQTVLLLILALRKKFGPTSRILLSKMDVKDAFWQIPINANNATTFGYV 492 ++ G H S H + ++ + G+ ++ P ++PGLR+SP GVV + + R I D +F+ VN++T + GH +L IL + GP + + K+D+ D F++I +N ++ G V Sbjct: 148 LKRGPHQSCKEHIDFLHEEFADMVAKGQWVVLPASEVLNLPGLRVSPPGVVPQEGRRPRTIVDYSFSD------VNAETLPLAAMEAMQFGHALDRLLREILLADPRHGP---VYMMKVDLSDGFYRICLNIDDIPKLGIV 279 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11473.957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11473.957.1 >prot_H-paniculata_contig11473.957.1 ID=prot_H-paniculata_contig11473.957.1|Name=mRNA_H-paniculata_contig11473.957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp DRLVSIVGEGVPVDKREEGGHLTAEMRCGNHTSADRHTPLVLDQVHQDLKback to top mRNA from alignment at H-paniculata_contig11473:1426..1956+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11473.957.1 ID=mRNA_H-paniculata_contig11473.957.1|Name=mRNA_H-paniculata_contig11473.957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=531bp|location=Sequence derived from alignment at H-paniculata_contig11473:1426..1956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11473:1426..1956+ >mRNA_H-paniculata_contig11473.957.1 ID=mRNA_H-paniculata_contig11473.957.1|Name=mRNA_H-paniculata_contig11473.957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig11473:1426..1956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |