mRNA_H-paniculata_contig11438.935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11438.935.1
Unique NamemRNA_H-paniculata_contig11438.935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 2.120e-29
Identity = 60/113 (53.10%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    7 GANEVKHVGLATRAFPGTHTARDISGWMNEIVTEFFGVMMGTIV-----FLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            G  +V  V LATRAFPG+HTA DI  W+  +  E+F  +MG  V     FL FTVDQG NV NA  +LG+ VV+CN HR+N+A++W LGIA +  TCKNKP +K    LAAL+
Sbjct:  122 GDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPMKK----LAALV 230          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 8.580e-29
Identity = 61/113 (53.98%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    7 GANEVKHVGLATRAFPGTHTARDISGWMNEIVTEFFGVMMGTIV-----FLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            G+ +V  V LA RAFPGTHTA DIS W+ E+  E+F   MG  V     FL FTVDQG NV NA  +LG+ VVKCN HR+NTA++W LGIA N    +NK    +M +LAAL+
Sbjct:  311 GSTDVTRVALACRAFPGTHTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALV 421          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.320e-28
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   13 NEVKHVGLATRAFPGTHTARDISGWMNEIVTEFFGVMMGTIV-----FLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            ++V  V LATRAFPG+HTA DI  W+  +  E+F  ++G  V     FLGFTVDQG N+ NA  +LG+ VV+CN HR+N+A++W LGIA    TCKNK    +M +LAA +
Sbjct:  121 DDVTRVALATRAFPGSHTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASV 231          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.390e-28
Identity = 59/113 (52.21%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    7 GANEVKHVGLATRAFPGTHTARDISGWMNEIVTEFFGVMMGTIV-----FLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            G  +V  V LATRAFPG+HTA DI  W+  +  E+   +MG  V     FL FTVDQG NV NA  +LG+ VV+CN HR+N+A++W LGIA +  TCKNKP +K    LAAL+
Sbjct:  122 GDTDVSRVSLATRAFPGSHTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPMKK----LAALV 230          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.400e-27
Identity = 61/120 (50.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   10 ANEVKHVGLATRAFPGTHTARDISGWMNE--------IVTEFFGVMMGTIV-----FLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            A  +  VGLATRAFPG+HTA DI  W+ +        + TEFF  MMG  V     FL FTVDQG NV NA  +L + V+KCNAHRLN+  MW LGI  +  T +N   EK+M RLAA++
Sbjct:  294 ATTITRVGLATRAFPGSHTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVV 413          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.240e-24
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    7 GANEVKHVGLATRAFPGTHTARDISGWMNEIVTEFFGVMMG-----TIVFLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            G  ++  + LA RAFPG+HTA DI  W+ ++  E+F   MG     + VFL FTVDQG N+ NA  +LG++VV+CN HRLNTA++W LGIA       N     +M +LAA++
Sbjct:  118 GDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMV 228          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.310e-24
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 1
Query:    7 GANEVKHVGLATRAFPGTHTARDISGWMNEIVTEFFGVMMG-----TIVFLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            G  ++  + LA RAFPG+HTA DI  W+ ++  E+F   MG     + VFL FTVDQG N+ NA  +LG++VV+CN HRLNTA++W LGIA       N     +M +LAA++
Sbjct:  313 GDTDMTRIALAARAFPGSHTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMV 423          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.030e-18
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1
Query:   91 NEIVTEFFGVMMG-----TIVFLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            +++  E+FG  MG     + VFL FTVDQG NV NA  +LG+ VVKCN HR+N+A++W LGIA +  TC+N     +M +LAAL+
Sbjct:    5 SQLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALV 89          
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.740e-11
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  139 FLGFTVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTEKVMTRLAALI 330
            FL FTVDQG N+ NA  +L ++VV+CN HR+NTA++W LGIA+     KN     +M +LAA++
Sbjct:   11 FLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIAAKGR--KNPTMGTLMKKLAAMV 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11438.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQI6_9PHAE2.120e-2953.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE8.580e-2953.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE1.320e-2850.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE1.390e-2852.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ52_9PHAE1.400e-2750.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE1.240e-2446.02Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE1.310e-2446.02Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.030e-1849.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE2.740e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11438contigH-paniculata_contig11438:2260..2831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size346
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.7672455-CDS-H-paniculata_contig11438:2259..25081622928851.7672455-CDS-H-paniculata_contig11438:2259..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11438 2260..2508 -
1691480644.8076668-CDS-H-paniculata_contig11438:2259..25081691480644.8076668-CDS-H-paniculata_contig11438:2259..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11438 2260..2508 -
1622928851.7779164-CDS-H-paniculata_contig11438:2735..28311622928851.7779164-CDS-H-paniculata_contig11438:2735..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11438 2736..2831 -
1691480644.8163712-CDS-H-paniculata_contig11438:2735..28311691480644.8163712-CDS-H-paniculata_contig11438:2735..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11438 2736..2831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11438.935.1prot_H-paniculata_contig11438.935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11438 2260..2831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11438.935.1

>prot_H-paniculata_contig11438.935.1 ID=prot_H-paniculata_contig11438.935.1|Name=mRNA_H-paniculata_contig11438.935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
PPGANEVKHVGLATRAFPGTHTARDISGWMNEIVTEFFGVMMGTIVFLGF
TVDQGANVFNAIDSLGISVVKCNAHRLNTALMWVLGIASNTNTCKNKPTE
KVMTRLAALIVQLA*
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mRNA from alignment at H-paniculata_contig11438:2260..2831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11438.935.1 ID=mRNA_H-paniculata_contig11438.935.1|Name=mRNA_H-paniculata_contig11438.935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at H-paniculata_contig11438:2260..2831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCGGGTGCAAATGAAGTCAAGCACGTGGGGCTCGCGACGAGGGCCTT TCCAGGGACCCACACGGCGCGCGACATTTCAGGATGGATGAATGAGGTGG ATTTGTTTCGTTTTCGCTGCCCTATATTAAACTATTTACCACATACAAAA TACTTTATATATCGCATTCATTTGGTCGTTGTGAGCTGTGGTCGTTGCAT GATGTACTGTTACATTCGCGTGGGTTTCATTTGCTTAATATTTAGTGAGA TCATGTAATTACCTCATGAACCACTCGTTTTCTGATTAAGCGTGCTGTTG CACTATCCCCTGTCCTATATCAGATTGTGACGGAGTTCTTCGGCGTCATG ATGGGAACAATCGTCTTCCTCGGCTTCACTGTAGATCAAGGTGCCAATGT ATTCAACGCCATCGATAGCCTGGGTATTTCTGTCGTCAAGTGCAATGCGC ATCGTCTGAATACAGCATTGATGTGGGTACTGGGGATTGCTAGTAACACC AACACGTGCAAGAACAAACCCACGGAGAAGGTCATGACGAGGCTCGCGGC GTTGATTGTGCAGCTTGCTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig11438:2260..2831-

>mRNA_H-paniculata_contig11438.935.1 ID=mRNA_H-paniculata_contig11438.935.1|Name=mRNA_H-paniculata_contig11438.935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig11438:2260..2831- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCGGGTGCAAATGAAGTCAAGCACGTGGGGCTCGCGACGAGGGCCTT
TCCAGGGACCCACACGGCGCGCGACATTTCAGGATGGATGAATGAGCCCC
CGGGTGCAAATGAAGTCAAGCACGTGGGGCTCGCGACGAGGGCCTTTCCA
GGGACCCACACGGCGCGCGACATTTCAGGATGGATGAATGAGATTGTGAC
GGAGTTCTTCGGCGTCATGATGGGAACAATCGTCTTCCTCGGCTTCACTG
TAGATCAAGGTGCCAATGTATTCAACGCCATCGATAGCCTGGGTATTTCT
GTCGTCAAGTGCAATGCGCATCGTCTGAATACAGCATTGATGTGGGTACT
GGGGATTGCTAGTAACACCAACACGTGCAAGAACAAACCCACGGAGAAGG
TCATGACGAGGCTCGCGGCGTTGATTGTGCAGCTTGCTTGAATTGTGACG
GAGTTCTTCGGCGTCATGATGGGAACAATCGTCTTCCTCGGCTTCACTGT
AGATCAAGGTGCCAATGTATTCAACGCCATCGATAGCCTGGGTATTTCTG
TCGTCAAGTGCAATGCGCATCGTCTGAATACAGCATTGATGTGGGTACTG
GGGATTGCTAGTAACACCAACACGTGCAAGAACAAACCCACGGAGAAGGT
CATGACGAGGCTCGCGGCGTTGATTGTGCAGCTTGCTTGA
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