mRNA_H-paniculata_contig11423.927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11423.927.1
Unique NamemRNA_H-paniculata_contig11423.927.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.090e-21
Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 RWLKELGATRVKRRISPCLSLTPRKDRVDFIWDQAARSRITFRSGFQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRPDPSRDFDSKIGTWR 333
            RW  +LGA +   RI P LS   ++ R+DFI D+       +      +H+DESWF L+ ++++V +F GE+  G  +  ++S++PK+M I A +RPDP+ DFD KIG WR
Sbjct:  107 RWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWR 217          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: A0A024THY2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THY2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.150e-11
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  112 SRITFRSGFQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRPDPSRDFDSKIGTW 330
            S + F   +  +H+DE WF+   DR +V +  GEE V     + K ++PK+MF+CAV+RP P+  FD KIG W
Sbjct:  162 SEVPFSGMWDVVHLDEKWFNADKDRRKVYLVDGEE-VKPRGCKSKRFLPKVMFLCAVARPQPALGFDVKIGLW 233          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: W4FMD0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FMD0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.690e-9
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    7 LKELGATRVKRRISPCLSLTPRKDRVDFIW-DQAARSRITFRSGFQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRP--DPSRD--FDSKIGTW 330
            LK     R   R+ P L+   R +R++F   D +  + + F      +H+DE WF+   DR +V +  GE R+G    + K +IPK+MF+ AV+RP  D + +  FD KIG W
Sbjct:  325 LKSGTLERRSSRLKPLLTDENRTERIEFCRSDGSGLAELPFLDMHDVVHLDEKWFNADKDRRKVYLTKGE-RIGRRACKSKRFIPKVMFLAAVARPQYDDAGNLIFDGKIGMW 436          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: A0A5D6XR23_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR23_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-7
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:  136 FQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRP--DPSR--DFDSKIGTW 330
            F  +HIDE WF +   + RV + P E       AQ+KS++PKLMF+CA++RP  DP+    FD  IG W
Sbjct:   25 FDRVHIDEKWFVVNKTKRRVYLTPTEPNP-QRHAQHKSHLPKLMFLCAITRPRVDPATGASFDRGIGIW 92          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: UPI001C27814C (uncharacterized protein LOC121774357 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27814C)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-7
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  100 QAARSRITFRSGFQTIHIDESWFSLVHDRDRVGMFPGE-ERVGSTKAQYKSYIPKLMFICAVSRP----DPSRDFDSKIG 324
            Q  + R+ F+S    +HIDE+WF +    DR  + P E E   S K+  K YI KLMF+CAVSRP    D    +D K+G
Sbjct:  154 QITQGRVQFQSMHNVVHIDENWFYMTKVSDRYYLLPNEDEPYRSCKS--KRYITKLMFMCAVSRPQFGMDGQATYDGKVG 231          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: A0A024U7I1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U7I1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.410e-7
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 1
Query:  136 FQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRPDPSRDFDSKIGTW 330
            ++ +H+DE WF+   D  +  +  GEE V     + K +IP +MF+CAV+RP     FD KIG W
Sbjct:    2 WEVVHLDEKWFNADKDCHKEYLVEGEE-VQPRACKSKRFIPNVMFLCAVARPQKDVGFDGKIGLW 65          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: A0A6A4YYS6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YYS6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.910e-7
Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 1
Query:   97 DQAARSRITFRSGFQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRP--DPSRD--FDSKIGTW 330
            D +  + + F      +H+DE WF+   DR +V +  GE R+G    + K +IPK+MF+ AV+RP  D + +  FD KIG W
Sbjct:  130 DGSGLAELPFLDMHDVVHLDEKWFNADKDRRKVYLTKGE-RIGRRACKSKRFIPKVMFLAAVARPQYDDAGNLIFDGKIGMW 210          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: UPI000B78B07A (uncharacterized protein LOC110692558 n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78B07A)

HSP 1 Score: 58.2 bits (139), Expect = 9.300e-7
Identity = 32/98 (32.65%), Postives = 50/98 (51.02%), Query Frame = 1
Query:   43 ISPCLSLTPRKDRVDFIWDQAARSRITFRSGFQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRPDPSRD----FDSKIG 324
            + P L+    K+R+ +      +    F   + TIH+DE WF +     R  + PGE +   T  + K ++ K+MF+CAV+RP  + D    FD KIG
Sbjct:  130 LKPALTENNIKERLKWCLKAIDQDNGMFNDMYNTIHLDEKWFYMTKGTQRYYLLPGETQPYRT-CKSKRFVTKVMFLCAVARPQFNADGECIFDGKIG 226          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: A0A397EFX4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EFX4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-6
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   70 RKDRVDFIWDQAARSRIT-FRSGFQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRPDPSRD----FDSKIGTW 330
            R  R+  +   A ++  T F S +  +H+DE WF+   DR +V + PGE     T    K +IPK+MF+ AVSRP    D    FD K+G W
Sbjct:   33 RSTRIKPLLTDANKAECTAFCSLWDVVHLDEKWFNADTDRRKVYLVPGEIPPQRTWKS-KRFIPKVMFLAAVSRPRFDHDRGVLFDGKVGMW 123          
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Match: A0A397E5D7_9STRA (HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E5D7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.340e-6
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query:  103 AARSRITFRSGFQTIHIDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRPDPSRD----FDSKIGTW 330
            +A   + F      +H+DE WF+   DR +V +  GE   G    + K +IPK+MF+ AV+RP    D    FD KIG W
Sbjct:  173 SALVELPFSDMIDVVHLDEKWFNADKDRRKVYLTKGETPKGRA-CKSKRFIPKVMFLAAVARPQFDADGNLVFDGKIGMW 251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11423.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE2.090e-2140.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024THY2_9STRA3.150e-1142.47Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FMD0_9STRA5.690e-935.40Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A5D6XR23_9STRA1.010e-744.93Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
UPI001C27814C1.090e-742.50uncharacterized protein LOC121774357 n=1 Tax=Salvi... [more]
A0A024U7I1_9STRA4.410e-740.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A4YYS6_9STRA4.910e-737.80Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
UPI000B78B07A9.300e-732.65uncharacterized protein LOC110692558 n=2 Tax=Cheno... [more]
A0A397EFX4_9STRA1.030e-638.04Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A397E5D7_9STRA2.340e-637.50HTH_Tnp_Tc3_2 domain-containing protein n=2 Tax=Ap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11423contigH-paniculata_contig11423:3736..4267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog4565.Traes_2AL_228C3F4DD.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090,3GG9M@35493,3IN2T@38820,3M2XW@4447
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size532
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.2512572-CDS-H-paniculata_contig11423:3735..41161622928851.2512572-CDS-H-paniculata_contig11423:3735..4116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11423 3736..4116 +
1691480644.5225806-CDS-H-paniculata_contig11423:3735..41161691480644.5225806-CDS-H-paniculata_contig11423:3735..4116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11423 3736..4116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928851.2663023-UTR-H-paniculata_contig11423:4116..42671622928851.2663023-UTR-H-paniculata_contig11423:4116..4267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11423 4117..4267 +
1691480644.535879-UTR-H-paniculata_contig11423:4116..42671691480644.535879-UTR-H-paniculata_contig11423:4116..4267Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11423 4117..4267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11423.927.1prot_H-paniculata_contig11423.927.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11423 3736..4116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11423.927.1

>prot_H-paniculata_contig11423.927.1 ID=prot_H-paniculata_contig11423.927.1|Name=mRNA_H-paniculata_contig11423.927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
RWLKELGATRVKRRISPCLSLTPRKDRVDFIWDQAARSRITFRSGFQTIH
IDESWFSLVHDRDRVGMFPGEERVGSTKAQYKSYIPKLMFICAVSRPDPS
RDFDSKIGTWRERGQQYEFDMTIGTE*
back to top

mRNA from alignment at H-paniculata_contig11423:3736..4267+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11423.927.1 ID=mRNA_H-paniculata_contig11423.927.1|Name=mRNA_H-paniculata_contig11423.927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at H-paniculata_contig11423:3736..4267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGGCTCAAAGAGTTGGGCGCCACGAGGGTGAAACGGCGCATTTCCCC ATGTCTGTCGCTGACGCCCCGAAAGGACCGGGTAGACTTCATCTGGGACC AAGCAGCAAGGAGCCGCATCACTTTCAGGAGCGGCTTCCAAACAATTCAC ATCGACGAATCGTGGTTTTCCCTAGTTCACGACAGGGATCGCGTCGGCAT GTTCCCTGGGGAGGAAAGGGTGGGGTCCACCAAAGCACAGTACAAGAGTT ACATTCCTAAGTTGATGTTCATCTGCGCCGTTTCGCGTCCAGATCCTTCC CGCGATTTCGACAGCAAGATTGGAACCTGGCGTGAACGGGGGCAGCAATA CGAGTTCGACATGACCATTGGCACCGAGTGATACCAGGAGTAGTATAAGG ACTCTTCTCCTAGTAGCATTGAAGGAGAAAATGCCGTGGTTGGAGAGTGA GGAAGTTGTAGCGGAGCAGGACGGAGCGACCCCCCACACGGAGAAAGACA CGCCGCGGAAGCTCAACGAACTCGAGAGGGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11423:3736..4267+

>mRNA_H-paniculata_contig11423.927.1 ID=mRNA_H-paniculata_contig11423.927.1|Name=mRNA_H-paniculata_contig11423.927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig11423:3736..4267+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATGGCTCAAAGAGTTGGGCGCCACGAGGGTGAAACGGCGCATTTCCCC
ATGTCTGTCGCTGACGCCCCGAAAGGACCGGGTAGACTTCATCTGGGACC
AAGCAGCAAGGAGCCGCATCACTTTCAGGAGCGGCTTCCAAACAATTCAC
ATCGACGAATCGTGGTTTTCCCTAGTTCACGACAGGGATCGCGTCGGCAT
GTTCCCTGGGGAGGAAAGGGTGGGGTCCACCAAAGCACAGTACAAGAGTT
ACATTCCTAAGTTGATGTTCATCTGCGCCGTTTCGCGTCCAGATCCTTCC
CGCGATTTCGACAGCAAGATTGGAACCTGGCGTGAACGGGGGCAGCAATA
CGAGTTCGACATGACCATTGGCACCGAGTGACGATGGCTCAAAGAGTTGG
GCGCCACGAGGGTGAAACGGCGCATTTCCCCATGTCTGTCGCTGACGCCC
CGAAAGGACCGGGTAGACTTCATCTGGGACCAAGCAGCAAGGAGCCGCAT
CACTTTCAGGAGCGGCTTCCAAACAATTCACATCGACGAATCGTGGTTTT
CCCTAGTTCACGACAGGGATCGCGTCGGCATGTTCCCTGGGGAGGAAAGG
GTGGGGTCCACCAAAGCACAGTACAAGAGTTACATTCCTAAGTTGATGTT
CATCTGCGCCGTTTCGCGTCCAGATCCTTCCCGCGATTTCGACAGCAAGA
TTGGAACCTGGCGTGAACGGGGGCAGCAATACGAGTTCGACATGACCATT
GGCACCGAGTGA
back to top