mRNA_H-paniculata_contig1141.910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1141.910.1
Unique NamemRNA_H-paniculata_contig1141.910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1141.910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1141contigH-paniculata_contig1141:7315..11061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size287
Cds size285
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.4106128-CDS-H-paniculata_contig1141:7314..74541622928849.4106128-CDS-H-paniculata_contig1141:7314..7454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1141 7315..7454 +
1691480643.7309055-CDS-H-paniculata_contig1141:7314..74541691480643.7309055-CDS-H-paniculata_contig1141:7314..7454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1141 7315..7454 +
1622928849.4266136-CDS-H-paniculata_contig1141:10916..110611622928849.4266136-CDS-H-paniculata_contig1141:10916..11061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1141 10917..11061 +
1691480643.7398229-CDS-H-paniculata_contig1141:10916..110611691480643.7398229-CDS-H-paniculata_contig1141:10916..11061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1141 10917..11061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1141.910.1prot_H-paniculata_contig1141.910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1141 7315..11061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1141.910.1

>prot_H-paniculata_contig1141.910.1 ID=prot_H-paniculata_contig1141.910.1|Name=mRNA_H-paniculata_contig1141.910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MTKHFTTIILKARWAREGRCDSERQRHHSSRRFPDLHGPGCIRMEERYLL
TLHYPHRLPKRQITMAEAGTKRGWTIPVPCSMRFTWCLYRQEEVG
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mRNA from alignment at H-paniculata_contig1141:7315..11061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1141.910.1 ID=mRNA_H-paniculata_contig1141.910.1|Name=mRNA_H-paniculata_contig1141.910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3747bp|location=Sequence derived from alignment at H-paniculata_contig1141:7315..11061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAACACTTCACAACGATTATTCTCAAAGCTCGCTGGGCGCGAGA
GGGCCGTTGTGATTCGGAGAGACAGAGACATCATTCCTCTAGACGTTTTC
CAGATCTACATGGGCCGGGATGTATCCGCATGGAAGAGCGGTGAGTTGTC
GAGCGCACGCAATGCTGAGAATATACACCAGAAAAAGGTATCGAGCATCC
TTGTTTCGAAATGTCTCTTCGCTGCTCTATGCAGACCTTGACCGCTAGTG
CCCAGCACGATGCGACCACGTTGCATGCCCACGCAATTCAAATAACCCAA
AGTAGCGGGGTCAATGGGCAAGTCCTGTAAGTTGCGTGCATTCTCCATTC
AGTTGCCACAGTTTTTGCGGGTTTTATCTGCTCCTGTATTTAGTGTACCT
GCAACGGTGCTCTCATCATCTGACCAATCCGTTTGCATCGCAAATGATAT
AACCATCTCACATCGTCGCACAACGTCAAACCACGACCTATAATACAGGG
CTTCTGGTAACTTGTAACGTAGACAAGGTGATGCTGTTGCTGTTGTACCG
CGAAGTAAAACGACAGATAATTACCACAGGAGGCTTCCTCTTTCTGCGAG
AAGGGTCTGGTTTTGCTTACGCGTTCCTCTGTGCCTCTCTCTCCACCTGA
GCTTTCCTTGGGCATCACTTTTTTTTAGTTTTGGCATACCAAAGAAGAAA
GAGAAAGAAAAAAGAAACAACGCGCCCACTTCGGAGTAAATTTATTTCCA
CACCCGAGGGCGGGATTCAGGTAAGGATGGTAAGATGAATCCCGCACAGT
CTCTCCGCACGCACACACGACAGACAATCTTTGCTCTTCAACCAGTCTGC
TCGACCGCATTCGGACAGACTTGAGACGCTTAGGGATGCTTGATTTGACC
TGCTGTGGTAAATTTGATGCAATTGGTGATGCACATGTGCATCCCTCTAG
GAACTAGAAACTAGGAATTGGACTTTGTAGTGGCTAACAGTAACAACCAG
TCTTGAACAAAGGATAATGACGAATACATCGACAGAAGGCTTGACACAGC
TGCCTCGAGCATCTCAGGTGCAAAAAGGAGTTGTATTATTGCCGTTTGAC
GGCTTATATCTTGGATTTAGTGTTGAACGAGAACGGGCAAATACCAACTT
CTTTCGTATGGGCGAGCACTCCACAGCTAATTTGGCCGTGTACTATTTTT
ATTTAAGGTGCGAGAGTAATATATAAAGAGATCGAAATTACTTTTTTCTT
TTTTCAGATTTTTGACACGAAGCATTACCGACACGGCGGGAATAGTAATT
ACGGCCACGTTCGTTGACTCATCACCATTTCAACAGGCGACTTGACCAAG
ATAAAATGAAAGCTCACACAAAGCGCACGAGCGAACTGGCAGTCAGCTAT
AGAGAGTCCCACAACACGCGCGTTAGTGTGGACGATAGGCTAGCTATCCA
CGTCAGGCTTTGTTTTTTTACGGAAATGTGATTTCATATGGGAGGAGTTA
AAGCAATTCACGTGAGGTTGGAAATATATATAATCGACCGCTTTATTCAC
CCTTCGGTTGTGGTGTCTGCCCTGGCGGTGAGGCACAACAAAAAATTGGT
TTTTCCATCAGATTGAACCCAAACGAAGTGTATCTGCTCAGTACATCACA
ATGGCCTCGGCTCAAGGTATGTTCTTTGGAACCAGGGTAAAAATATGCTT
TGAATAGTTTTATAATATATGTTTTGTTTTCGTGAATATTATCCTGTTTT
ACTTTTCATAATTGTTGGTTTTGCTCTAGCTATTATTATTTTTGGTGGAC
TTCATTCTTTTTTTTTTTACAGCAGCAGACAATGAAAATTTATCGTCTTA
TGAGTGTGGATTTGATCCTTATGAAAATGCTAGAAATGCATTTAATGTAC
GTTTTTTATTTAGTTGCTGTTCTTTTTCTCTTCTTTTTGATATTGAAACT
ATTTTTTTATTCCCTTGGGCTGTTACTTTAAGCCAATTAGCTTCTTTGGC
AGTGAAGCTCTCTCGCTCTTGCTGTATTTCTCTTCATCCCGCCCGTGCAA
CTCCATGGTTTTGTTCGAGGTAAAAGACGGCATAGGCTGGTGTTGAGAAG
ATGAGACAAATGGAAAACGGAATGCGCGTATTTACAGGCAGTACATCACT
CTAATACTGATAAGAGTATAGTGAAAATATTTATAGGTCAGTTTCTAGCA
ACAATATATATATATATTTTACAAAATTATGAAATTCACAAAAACAATGT
GGAAAATTTTGAGTGCCAAGTCCGTGACAAAAACACACACAAACACACAA
TTGTAGAATTCGAAATTTCCAACGAATCGGTTCTGTTGATTCGATTCCAA
TTTTTCCACTCGGCCTTAACAGTAGGGATTTTGAACTCTGAGAATTTCGG
CTCTGCTTACGTTCTAGCCAAACTCTGCGTTTTTTCAGGTTTTGAAAACT
TTTGTAAAAAAAATGTGGTCCCTGGAATATGATTGATCCTTACTTCCAGC
TAAAAAATCAGAAACAGCAAGATGTCCACGGACCTACGCCCGAACGGGTA
GGGTGGCTCGTGAACTGAGCATGACTGGAAGTCTAGTCGGAGGTCTTTTA
ATGGGTGCAACCCCCACACTGCCTACTTGGTTCGGCCGAACCGGGGTGGC
GCCGAACGGAGGTTTGATTCAGGCGATTGAATGAGGAAAAATCTTGTAAA
ATTATTTTTGACGTGTTCGTGTTTTATGTATGTACACGATCTATGTCATG
CTCCATGGTTCCGTGAGAACGACCTGGTGTGTGCGACTTTGGGGAGGCAC
AGACACCGCTGTAGTTACGGGATGGTTTGTGCTCTGCCTTCACGTAGTTG
GTCCTTTTGCTTTCCTGTCGCACTCTGTAGATACGGGCAGGGCGTATGAC
AAGACCACGGGATATGGGACAAGGAGCGTTAATATTTCGACGGTTCGAGA
TCGAACATTGCGGGCGACATTTGGCCGAGACGGTACGAGACTATCGTCTC
TTGATCCCTTCCCGTCTGGTTCTGTCAAGCTCTTGTGATGAGCCCTAGTT
ACAGGGGCAAAGCATGTATGCCCTCCAGTGAAACGCTGGGTTCGCATGTA
CTTCTTGCTACACATGGGCACAATATGTTTTGAAGAAGTCACTTGAGTAC
AGCATAGAAAAAATTGTTTCAAATCTAGCAGTATTCAACAGCTCGCAGAT
GAAGGCTTCATTGTCCAAGTTAAAAACGCCTCCATGCAACCTTCCACCTT
TTCTTTACCTGATGATCATACTCCAAAAGTAGAACAACGTGCGCAAGTGG
CAAGTCATATTCCAATATCGAACATTACACGCGAAAGGGGTCAAGGGCCT
GTGGAGCTGTCTATCGATTCGATTAAAACGGATTTTCGGAAAGCGCCAAG
TGTTTTCGTGCTGTATCATGAAGTCATACTCCAATATTCGCGATGACCTT
CATTGGCCGTGATCGACCTTCACTTCGATTTTTCCAACACATTTTAATAT
TTTAATATTTTTGAACCCAAAAATTAAAGATTTTCTTTTTTTCTTTTCTT
ATTGCTACTGTTGCTGCTGTTGTTGCTGCCTGTGAAATGTCCGTTGGTCT
AGTTACCTCCTCACCCTCCACTACCCCCACCGCCTTCCAAAGAGACAAAT
CACGATGGCGGAGGCGGGGACGAAGAGGGGATGGACGATACCCGTCCCCT
GTTCGATGCGGTTTACGTGGTGTCTGTACAGGCAGGAAGAGGTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1141:7315..11061+

>mRNA_H-paniculata_contig1141.910.1 ID=mRNA_H-paniculata_contig1141.910.1|Name=mRNA_H-paniculata_contig1141.910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig1141:7315..11061+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAACACTTCACAACGATTATTCTCAAAGCTCGCTGGGCGCGAGA
GGGCCGTTGTGATTCGGAGAGACAGAGACATCATTCCTCTAGACGTTTTC
CAGATCTACATGGGCCGGGATGTATCCGCATGGAAGAGCGATGACGAAAC
ACTTCACAACGATTATTCTCAAAGCTCGCTGGGCGCGAGAGGGCCGTTGT
GATTCGGAGAGACAGAGACATCATTCCTCTAGACGTTTTCCAGATCTACA
TGGGCCGGGATGTATCCGCATGGAAGAGCGTTACCTCCTCACCCTCCACT
ACCCCCACCGCCTTCCAAAGAGACAAATCACGATGGCGGAGGCGGGGACG
AAGAGGGGATGGACGATACCCGTCCCCTGTTCGATGCGGTTTACGTGGTG
TCTGTACAGGCAGGAAGAGGTGGGGTTACCTCCTCACCCTCCACTACCCC
CACCGCCTTCCAAAGAGACAAATCACGATGGCGGAGGCGGGGACGAAGAG
GGGATGGACGATACCCGTCCCCTGTTCGATGCGGTTTACGTGGTGTCTGT
ACAGGCAGGAAGAGGTGGGG
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