mRNA_H-paniculata_contig11360.876.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11360.876.1
Unique NamemRNA_H-paniculata_contig11360.876.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11360.876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11360contigH-paniculata_contig11360:5092..6099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size451
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11360.876.1prot_H-paniculata_contig11360.876.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11360 5092..5900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.967714-CDS-H-paniculata_contig11360:5091..51421622928843.967714-CDS-H-paniculata_contig11360:5091..5142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11360 5092..5142 -
1691480641.8458948-CDS-H-paniculata_contig11360:5091..51421691480641.8458948-CDS-H-paniculata_contig11360:5091..5142Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11360 5092..5142 -
1622928843.9857976-CDS-H-paniculata_contig11360:5570..56721622928843.9857976-CDS-H-paniculata_contig11360:5570..5672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11360 5571..5672 -
1691480641.8549657-CDS-H-paniculata_contig11360:5570..56721691480641.8549657-CDS-H-paniculata_contig11360:5570..5672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11360 5571..5672 -
1622928844.0046647-CDS-H-paniculata_contig11360:5801..59001622928844.0046647-CDS-H-paniculata_contig11360:5801..5900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11360 5802..5900 -
1691480641.8642695-CDS-H-paniculata_contig11360:5801..59001691480641.8642695-CDS-H-paniculata_contig11360:5801..5900Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11360 5802..5900 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.0276406-UTR-H-paniculata_contig11360:5900..60991622928844.0276406-UTR-H-paniculata_contig11360:5900..6099Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11360 5901..6099 -
1691480641.8759239-UTR-H-paniculata_contig11360:5900..60991691480641.8759239-UTR-H-paniculata_contig11360:5900..6099Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11360 5901..6099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11360.876.1

>prot_H-paniculata_contig11360.876.1 ID=prot_H-paniculata_contig11360.876.1|Name=mRNA_H-paniculata_contig11360.876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MFFVTSSPLRALQFPICRARLLQAIRTLAKSTKEGCDGTGKLENPHGRGY
CSSTRCVGRVDRLLRLLQIRCGISQNESHQCHAR
back to top

mRNA from alignment at H-paniculata_contig11360:5092..6099-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11360.876.1 ID=mRNA_H-paniculata_contig11360.876.1|Name=mRNA_H-paniculata_contig11360.876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig11360:5092..6099- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGACGCCGCAAGCAGCAGTTGGACATAATCAACCTCTGGTGATAAGAG
CAACAGGGTCGCGCTAGTCGCGATGCTATGGACGACCGGAGAAGATAGGG
CGTTGCAATGCTAAACCTGCGGGCGTCTTTTCACCCGGACAGGACAGGAT
GTGAGCTCCGTTCAGTCGCAGCAACACGAGGAGTCTGAGGAGCACAGGCA
TGTTTTTCGTCACTAGTTCTCCCCTTCGCGCGCTGCAGTTCCCAATTTGT
CGTGCGAGGTTGCTGCAAGCTATCCGCACCTTGGCCAAGTCTACGAAGGT
GTGGCAGCGCAGACGGTTGTGTGGTTAATGACCCGTATCCCATCGTAATT
TATGCAGACTGCCCTGAATTGATATTCTTCCTTGTCGGCTCGCTGCTGTG
CTTGCATGCTGATTCCATCATGTGCAGGAGGGATGCGATGGCACAGGGAA
GCTAGAAAACCCACATGGCCGTGGCTACTGCAGCAGCACAAGATGCGTCG
GCCGAGTGGATCGGCTGTTGCGACTACTGGTATGTTTCATCCCAGCACAG
AAGCAAGTTGAGCAGTCAAGCCTTCGTGGGCAGACAAACATATCGAAGAA
GCGAAAGTACCACCCCCGGTCGCACGACGTGCTATCGACATAATGTAGGG
GCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGTGGGCAG
CGAAACGAAGTATTATAGGGGCAAAGTATGTCCAACGATACGTCAAAACC
AATTTACCGTTCTTTTTTCAAGCACGTGTCTGTACTCGTGGTACTGGGTT
ATGCTATAGAGCATGTTATAGAGGGGTAGATCAAGACAGAGGTCCAGACG
TTTTGTTTAGCGGTAGCGCAGTTTGATGACGCCCTTTTTTCTGCACCTTG
GAAAGCGCTTTTACAAGGACAACCGCGATCCCCCCCGCTACGCTTTCGAC
AGAACAGCAGATTCGATGTGGAATTTCGCAAAACGAATCCCACCAATGCC
ACGCGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11360:5092..6099-

>mRNA_H-paniculata_contig11360.876.1 ID=mRNA_H-paniculata_contig11360.876.1|Name=mRNA_H-paniculata_contig11360.876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig11360:5092..6099- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTTCGTCACTAGTTCTCCCCTTCGCGCGCTGCAGTTCCCAATTTG
TCGTGCGAGGTTGCTGCAAGCTATCCGCACCTTGGCCAAGTCTACGAAGA
TGTTTTTCGTCACTAGTTCTCCCCTTCGCGCGCTGCAGTTCCCAATTTGT
CGTGCGAGGTTGCTGCAAGCTATCCGCACCTTGGCCAAGTCTACGAAGGA
GGGATGCGATGGCACAGGGAAGCTAGAAAACCCACATGGCCGTGGCTACT
GCAGCAGCACAAGATGCGTCGGCCGAGTGGATCGGCTGTTGCGACTACTG
GAGGGATGCGATGGCACAGGGAAGCTAGAAAACCCACATGGCCGTGGCTA
CTGCAGCAGCACAAGATGCGTCGGCCGAGTGGATCGGCTGTTGCGACTAC
TGCAGATTCGATGTGGAATTTCGCAAAACGAATCCCACCAATGCCACGCG
AGGCAGATTCGATGTGGAATTTCGCAAAACGAATCCCACCAATGCCACGC
GAGG
back to top