mRNA_H-paniculata_contig11359.872.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11359.872.1
Unique NamemRNA_H-paniculata_contig11359.872.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5L513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L513_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.370e-42
Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    1 MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            M +R GP   L+ EE+ ++E+ L+YAGR CL +G   L   V+ +C+DGRP+PWDP +GPG++W  GF++RHPR+S R +  +EANR+T D + R+ EFY  W    DE KP ADH+ NTDETG
Sbjct:    1 MKARVGPATFLSEEEEKSLEDVLLYAGRHCLAVGRLHLLETVIQLCNDGRPIPWDPGQGPGKDWLAGFLKRHPRVSERTTRIYEANRITEDKEPRIVEFYKKWAALLDEHKPEADHVHNTDETG 124          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5JTL4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL4_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.510e-40
Identity = 61/123 (49.59%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    1 MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDET 369
            M +R G   VLT EE+ A+E+ L+YA R  + +  ++LK  V  +C+DGRP+PWDP+KGPG+ W  GF+RRH R+SLR +  +EANR+T+ + DRL  FY  W+++ +E KP  DH+WNTDE+
Sbjct:   49 MDARVGHGTVLTKEEENALEDVLLYACRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPEDDRLHNFYKFWQEFVNEHKPAPDHVWNTDES 171          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5JLA4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA4_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 9.310e-40
Identity = 60/122 (49.18%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    7 SRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            +R G   VL  EE+ A+E+ L+YAGR  + +  ++LK  V  +C+DGRP+PWDP+KGPG+ W  GF+RR+ R+SLR +  +EANR+T+ + DRL  FY  W+++ +E KP  DH+WNTDE+G
Sbjct:   51 ARVGHGTVLMKEEENALEDVLLYAGRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRYDRISLRLARIYEANRMTSPEDDRLHNFYNFWQEFVNEHKPAPDHVWNTDESG 172          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5JNM8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM8_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.970e-39
Identity = 60/124 (48.39%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            M +R GP  V+TA E+ A+E  L+YA R  + + + +L   V  +C+DGRP+PW P+KGPGR W  GF+ RH R+SLR +  +E+NR+T  + +RL +FY  W Q+ DE +P ADH+WNTDE+G
Sbjct:    1 MGARVGPGTVMTAGEEDALEGVLLYAARNYIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRMTCVEDERLHKFYDFWGQFLDEHQPAADHVWNTDESG 124          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5JDZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ5_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.860e-38
Identity = 60/124 (48.39%), Postives = 88/124 (70.97%), Query Frame = 1
Query:    1 MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            M +R G   VLT EE+ A+E+ L+YAGR  + +  ++LK  V  +C+D RP+PWDP+KG G+ W  GF+R H R+SLR +  +EANR+T+ + DRL +FY  W+++ +E KP  DH+WNTDE+G
Sbjct:   49 MDARVGHGTVLTKEEENALEDVLLYAGRNYIPLTRNDLKERVRQLCNDDRPIPWDPDKGLGKSWLQGFLRGHDRISLRLARIYEANRMTSPEDDRLHKFYKFWQEFVNEHKPAPDHVWNTDESG 172          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.860e-37
Identity = 61/122 (50.00%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    7 SRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            +R GP  V+TA E+ A+E+ L+YAGR  + + + +L   V  +C+DGRP+PW P+KGPGR W  GF+ RH R+SLR +  +E+NRVT+ + +RL +FY  W Q+ DE +P ADH+WNTDE+G
Sbjct:   65 ARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTSAEDERLHKFYDFWGQFIDEHQPAADHVWNTDESG 186          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5JRY4_9PHAE (HTH psq-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY4_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 2.890e-36
Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            M ++ G   +L+ EE+ ++E+ L++A R  L +G   L+  V  +C+DGR +PWDPEKGPG++W  GF RRHPR++ R +  +EANR+T D++ R+ +FY  W    DE KP A+H+ NTDETG
Sbjct:   48 MNAKVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIPWDPEKGPGKDWLAGFRRRHPRVAERSTRIYEANRITEDEEPRMVQFYERWAALLDEFKPEANHVHNTDETG 171          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5K6W6_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W6_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 3.160e-36
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1
Query:    1 MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            M +R GP  V+TA E+ A+E+ L+YAGR  + +   +L   V  +C+DGRP+PW P+KGPGR W  GF+ RH R+SLR +  +E+NRVT    +RL +F+  W Q+ DE +P ADH+WNTDE+G
Sbjct:  406 MDARVGPGTVMTAAEEDALEDVLLYAGRNYIPLTPADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTCVGDERLHKFFDFWGQFLDEHQPAADHVWNTDESG 529          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5JR11_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR11_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.280e-35
Identity = 53/102 (51.96%), Postives = 76/102 (74.51%), Query Frame = 1
Query:   67 LVYAGRRCLGIGSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            L+YAGR  + +  ++LK  V  +C+DGRP+PWDP+KGPG+ W  GF+RRH R+SLR +  +EANR+T+ + DRL  FY  W+++ +E KP  DH+WNTDE+G
Sbjct:    7 LLYAGRNYIPLTRNDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPENDRLHNFYKFWQEFVNEHKPAPDHVWNTDESG 108          
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Match: A0A6H5K8A1_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.810e-35
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGI-------GSDELKRGVLNICSDGRPVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFYGSWKQYYDEQKPVADHIWNTDETG 372
            M +R G   VLT EE+         A +RC  +         D+LK  V  +C+DGRP+PWDP+KGPG+ W  GF+RRH R+SLR +  +EANR+T+ + DRL  FY  W+++ +E KP  DH+WNTDE+G
Sbjct:   49 MDARVGHGTVLTKEEE--------NARKRCAAVRWSELYSSHDDLKERVRQLCNDGRPIPWDPDKGPGKSWLQGFLRRHDRISLRLARIYEANRMTSPEDDRLHNFYKFWQEFVNEHKPAPDHVWNTDESG 171          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11359.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L513_9PHAE1.370e-4250.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTL4_9PHAE6.510e-4049.59HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JLA4_9PHAE9.310e-4049.18HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JNM8_9PHAE4.970e-3948.39HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JDZ5_9PHAE2.860e-3848.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX7_9PHAE1.860e-3750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY4_9PHAE2.890e-3645.97HTH psq-type domain-containing protein n=4 Tax=Ect... [more]
A0A6H5K6W6_9PHAE3.160e-3649.19HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JR11_9PHAE1.280e-3551.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K8A1_9PHAE1.810e-3545.80HTH psq-type domain-containing protein n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11359contigH-paniculata_contig11359:5910..6281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.6
Seed ortholog evalue7.5e-11
Seed eggNOG ortholog13249.RPRC012521-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Jerky protein homolog-like
EggNOG OGs38DQS@33154,3BK20@33208,3CYN0@33213,KOG3105@1,KOG3105@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.382426-CDS-H-paniculata_contig11359:5909..62811622928843.382426-CDS-H-paniculata_contig11359:5909..6281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11359 5910..6281 +
1691480641.6242046-CDS-H-paniculata_contig11359:5909..62811691480641.6242046-CDS-H-paniculata_contig11359:5909..6281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11359 5910..6281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11359.872.1prot_H-paniculata_contig11359.872.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11359 5910..6281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11359.872.1

>prot_H-paniculata_contig11359.872.1 ID=prot_H-paniculata_contig11359.872.1|Name=mRNA_H-paniculata_contig11359.872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MTSRPGPPAVLTAEEDVAIEERLVYAGRRCLGIGSDELKRGVLNICSDGR
PVPWDPEKGPGREWFVGFIRRHPRLSLRRSCNHEANRVTADDKDRLEEFY
GSWKQYYDEQKPVADHIWNTDETG
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mRNA from alignment at H-paniculata_contig11359:5910..6281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11359.872.1 ID=mRNA_H-paniculata_contig11359.872.1|Name=mRNA_H-paniculata_contig11359.872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig11359:5910..6281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTCGAGGCCTGGGCCACCAGCCGTGCTCACAGCCGAAGAGGACGT TGCGATTGAAGAGCGGTTGGTCTACGCAGGCCGTCGCTGTCTAGGCATCG GCAGCGACGAACTGAAGCGAGGTGTCCTCAACATCTGTAGTGATGGCCGT CCTGTGCCTTGGGATCCCGAGAAGGGACCCGGCAGAGAGTGGTTTGTGGG CTTCATACGTAGACACCCTCGGCTTTCACTGCGGAGAAGCTGCAATCACG AGGCCAACCGAGTCACCGCAGACGACAAGGACCGACTCGAAGAGTTCTAT GGCTCTTGGAAGCAATACTACGACGAGCAGAAACCTGTAGCTGATCACAT ATGGAACACGGACGAGACAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig11359:5910..6281+

>mRNA_H-paniculata_contig11359.872.1 ID=mRNA_H-paniculata_contig11359.872.1|Name=mRNA_H-paniculata_contig11359.872.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig11359:5910..6281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTTCGAGGCCTGGGCCACCAGCCGTGCTCACAGCCGAAGAGGACGT
TGCGATTGAAGAGCGGTTGGTCTACGCAGGCCGTCGCTGTCTAGGCATCG
GCAGCGACGAACTGAAGCGAGGTGTCCTCAACATCTGTAGTGATGGCCGT
CCTGTGCCTTGGGATCCCGAGAAGGGACCCGGCAGAGAGTGGTTTGTGGG
CTTCATACGTAGACACCCTCGGCTTTCACTGCGGAGAAGCTGCAATCACG
AGGCCAACCGAGTCACCGCAGACGACAAGGACCGACTCGAAGAGTTCTAT
GGCTCTTGGAAGCAATACTACGACGAGCAGAAACCTGTAGCTGATCACAT
ATGGAACACGGACGAGACAGGTATGACTTCGAGGCCTGGGCCACCAGCCG
TGCTCACAGCCGAAGAGGACGTTGCGATTGAAGAGCGGTTGGTCTACGCA
GGCCGTCGCTGTCTAGGCATCGGCAGCGACGAACTGAAGCGAGGTGTCCT
CAACATCTGTAGTGATGGCCGTCCTGTGCCTTGGGATCCCGAGAAGGGAC
CCGGCAGAGAGTGGTTTGTGGGCTTCATACGTAGACACCCTCGGCTTTCA
CTGCGGAGAAGCTGCAATCACGAGGCCAACCGAGTCACCGCAGACGACAA
GGACCGACTCGAAGAGTTCTATGGCTCTTGGAAGCAATACTACGACGAGC
AGAAACCTGTAGCTGATCACATATGGAACACGGACGAGACAGGT
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