mRNA_H-paniculata_contig11349.870.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11349.870.1
Unique NamemRNA_H-paniculata_contig11349.870.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: D8LB63_ECTSI (Putative adhesion lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB63_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 1.570e-81
Identity = 144/275 (52.36%), Postives = 190/275 (69.09%), Query Frame = 1
Query:    4 SEFYGQLDTVITALTTAM-MDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAALPQEIVENLLLYHTLHGAIVEADIEKDATLFTALNIDLRTQGAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNTSTITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAA--TQMTVSGEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLPF 819
            S ++GQ DT+I AL  +  +D  LS P G FT+F PT+ AFL AG+GP ++  +P  I+ENLLLYHTL G ++ + I  D +LFTAL +DL T GA L+DS G    I EADV CSNGYLH VDGVLMPPDLM+SL TYN  GG YEGVFD   T+++LT++S +  GL GPYT+LAPTD AF  L L+ S I  ANRTALE +LRYH+V+G V   +++    L T++   +   V G  ++ D++G  A IL  +L SSNG++HAI +V++PF
Sbjct:  520 SPYFGQFDTMIAALAASSGLDMELSAP-GPFTLFAPTNAAFLHAGIGPENVEDIPPSILENLLLYHTLDGGVMRSAIASDDSLFTALGVDLATSGATLIDSEGNAIAITEADVKCSNGYLHYVDGVLMPPDLMSSLETYNEPGGSYEGVFDTFLTAINLTDVSGDYKGLNGPYTVLAPTDSAFLELRLDPSNINLANRTALEELLRYHMVDGEVGTNSMDDVGMLRTLSGGGSLSVVGGGTLIEDAEGGDASILVGNLPSSNGMVHAIDAVLMPF 793          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: A0A7Y1TSC2_9ACTN (Fasciclin domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y1TSC2_9ACTN)

HSP 1 Score: 139 bits (351), Expect = 9.630e-36
Identity = 97/281 (34.52%), Postives = 152/281 (54.09%), Query Frame = 1
Query:   16 GQLDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAAL--PQEIVENLLLYHTLHGAIVEADIEKDATLFTALNIDLRTQGAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPP-----DLMTSLSTYNAKGGPYE-----GVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNTSTITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMTVS--GEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLP 816
            G  DT++TA+T A +   LS  +G FTVF PTD AF  A L  G++  L    + +  +LLYH + G +  AD+   AT  T    D+     V+   +   SN+++ D+  SNG +HV+D VL+PP     D M       A G   +     G F+ L  ++    +   L+G  GP+T+ APTD+AFA+L   T      +  AL  +L YH+V G V A ++      TT+  + +T++  GE V+ D+    A+++ATD+++SNG++H I +V+LP
Sbjct:   60 GSFDTLVTAVTAAGLADTLSG-EGPFTVFAPTDDAF--AALPEGALEGLLADTDALTEVLLYHVVSGDVRAADVVNLATATTLAGADITID--VMDGVMLNASNVIQTDIVASNGVIHVIDAVLLPPGFGEEDAMDDDMGDEAVGTIVDVAVGAGTFETLVAAVQAAGLVDTLTG-DGPFTVFAPTDEAFAALPEGTVAALLEDIPALTDILLYHVVAGEVKAADVVGLDSATTVQGSDITITIDGETVMVDA----ANVIATDVMASNGVIHVIDAVILP 330          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: UPI0019A1EFFD (Fasciclin domain-containing protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=UPI0019A1EFFD)

HSP 1 Score: 136 bits (343), Expect = 9.900e-35
Identity = 99/276 (35.87%), Postives = 143/276 (51.81%), Query Frame = 1
Query:   22 LDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAF--LKAGLGPGSMAALPQE-IVENLLLYHTLHGAIVEADIEKDATLFTA----LNIDLRTQGA-VLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLN---TSTITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMTVSGEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLP 816
            L  ++ A+  A +   LS   G +TVF PTD AF  L A LG      L    ++  +L YH L   +  A +     + T       ID    GA V+ D    R+NI + DVA SNG +HV+D VL+P +    + T  A        F VL  ++   N+   L G  GP+T+ APTD AFA+L      T T   AN   L  VL YH+V G V A N+   +P+TT+     +V+   V+ D +GR+A+I+ATD+++SNG++H +  V+LP
Sbjct:   47 LSILVEAVVAADLATTLSGA-GPYTVFAPTDAAFASLLAELGVTKAQLLANRPLLTQVLTYHVLPARVPAAAVPAGQAITTVEGGIFKIDAAAGGALVITDGRNRRANITQTDVAASNGVIHVIDKVLLPAN-RNIVQTAQASAD-----FTVLVEAVVAANLVPTLQGA-GPFTVFAPTDAAFAALLAELGVTKTALLANTALLTKVLTYHVVPGRVLAANVPVGAPITTVQGETFSVNASLVITDRRGRTANIVATDVLASNGVIHVVDRVILP 314          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: A0A1E7EP57_9STRA (Beta-Ig-H3/fasciclin (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EP57_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.370e-33
Identity = 99/296 (33.45%), Postives = 151/296 (51.01%), Query Frame = 1
Query:   28 TVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAALPQEIVE------------NLLLYHTLHGAIVEADIEKDATLFTALN-----IDLRTQGAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPD------LMTSLSTYNAKGGPYE-GVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLG--LNTSTITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMTVSGEGVLGD-SQG---RSADILATDLVSSNGIMHAISSVMLPFSL 825
            T++ AL  A +   LS+P G +TVF PTD AF          AALP+E+V             N+LLYH + G ++  D+       T L      +DL T G  + DS      ++EADV  SNG +HVVD VL+PP       L TS   ++      + G+F+ L  +L   ++   LS   GPYT+ APTDDAFA+L   L    + G N+ AL  +L YH+V+G V + ++       T+      + GE V  D + G     + ++  D+++SNG++H + +V++P S+
Sbjct:    1 TLVAALGAADLVDALSEPNGPYTVFAPTDDAF----------AALPEELVPCLLRSKNKGALTNILLYHVVDGQVLSTDLSNGLEAPTLLEGEDVTVDL-TDGVKINDS-----TVIEADVRTSNGVIHVVDAVLVPPSIDVAAFLETSCGAFDIPETAVDAGIFNTLVAALGAADLVDALSEPNGPYTVFAPTDDAFAALPEELVPCLLKGKNKPALTNILLYHVVDGQVLSTDLSNGLEAPTL------LEGEDVTVDLTDGVKINDSTVIKADVLTSNGVIHVVDAVLVPPSI 274          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: A0A2E7KCV9_9PLAN (Beta-Ig-H3/fasciclin n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KCV9_9PLAN)

HSP 1 Score: 134 bits (337), Expect = 3.420e-33
Identity = 98/276 (35.51%), Postives = 154/276 (55.80%), Query Frame = 1
Query:   16 GQLDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAAL----PQEIVENLLLYHTLHGAIVEADIEK--DATLFTALNIDLRTQ-GAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASL--GLNTSTITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMTVSGEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLP 816
            G   T+ TALT A +   L + KG FTVF PTD+AF K  L PG++  L     +  + ++L YH + G +  A + K   A       +D+ T+ G+V+VD     + +++AD+ CSNG +HV+D V++P D    + T +A G      F+ L T+     ++  LS  KGP+T+ APTD+AFA L  G   S +   N+  L  +L+YH+V G V +E+  +A    T+   ++ +S  G  G ++   A IL TD+ +SNG++H I +V+LP
Sbjct:   40 GSFKTLATALTEADLVKAL-EGKGPFTVFAPTDEAFSK--LPPGTVETLLKPENKSKLVDILTYHVVSGEVPAAKVVKLTGAETLNGQRVDIITKDGSVMVDG----ATVIKADIKCSNGIIHVIDQVILPAD-KNLVETASAAGK-----FNTLLTAATKAGLAGVLSE-KGPFTVFAPTDEAFAQLPEGTIESLLKPENKKKLADILKYHVVAGRVYSEDAVSAGEAKTLQGQKVKISVSG--GVAKVNQAKILKTDIDASNGVIHVIDAVILP 299          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: A0A2E0ZKH1_9CHLR (Adhesion lipoprotein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZKH1_9CHLR)

HSP 1 Score: 135 bits (340), Expect = 4.770e-33
Identity = 95/281 (33.81%), Postives = 149/281 (53.02%), Query Frame = 1
Query:   16 GQLDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAAL---PQEIVENLLLYHTLHGAIVEADIEKDATLFTALNIDLRTQGAVLVDS---LGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYN-AKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNT-STITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMTVS---GEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLPFSL 825
            G+  T++TAL  A +   L+   G+FTVF PTD AF  A L  G++ +L   P+  + ++LLYH + GA++   +    TL +A  +        + D    L E   +V  D+  SNG +HV+D VL+PP +       +  +    +G F  L  +L+   ++  L+G +G +T+ APTDDAFA+L   T   +      AL  VL YH+ EG+V AE + T    TT+    +T++   G  +L DS      ++ TD+ +SNGI+H I  V+LP S+
Sbjct:   67 GRFTTLVTALEAAGLAETLAGD-GAFTVFAPTDDAF--AALPEGTVPSLLEDPEGALTDVLLYHVVDGAVMAETV---VTLESASTLQGEDVSITVTDGNVFLNENVQVVTTDIEASNGVIHVIDAVLLPPSMSAEEEAPSITEIAVADGRFTTLVAALEAAGLAETLAG-EGEFTVFAPTDDAFAALPEGTVEALLEDPEGALTEVLLYHVAEGVVPAETVVTLESATTLQGEDVTIAVEDGSVILNDS----VQVIITDIAASNGIIHVIDGVLLPPSM 336          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: A0A356ELT2_9PLAN (Beta-Ig-H3/fasciclin n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356ELT2_9PLAN)

HSP 1 Score: 131 bits (330), Expect = 5.480e-33
Identity = 90/274 (32.85%), Postives = 146/274 (53.28%), Query Frame = 1
Query:   16 GQLDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAALPQ--EIVENLLLYHTLHGAIVEADIEK--DATLFTALNIDLRTQ-GAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNT--STITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMTVSGEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLP 816
            G   T+  AL  A +   L   KG FTVF PTD+AF K   G       P+  E +  +L YH + G I+ AD+ K  +A      N+ ++   G V VD+    +N+V+ D+  SNG +HV+D V++P D++ +            G F  L  +L   ++ + L G KGP+T+ APTD+AF+ L   T    +   N+  L  +L YH+V G V A ++   +   T+   ++T++ +G  G  +  +A+++ TD+ +SNG++H I +VMLP
Sbjct:   41 GSFKTLAAALKAADLVETLKG-KGPFTVFAPTDEAFSKLPKGTVENLLKPENKEKLAGILTYHVVAGKIMAADVVKLKEAKTIQGSNVSIKVAYGKVKVDN----ANVVKTDIQTSNGVIHVIDAVIIPKDIVDTAVE--------AGSFKTLAAALKAADLVKTLKG-KGPFTVFAPTDEAFSKLPKGTVEDLLKPENKEKLAGILAYHVVPGKVMAADVVKLTKAKTVQGAEVTITVKG--GKVKVDNANVVKTDIQTSNGVIHVIDAVMLP 298          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: A0A3L7NFZ5_9BACT (Fasciclin domain-containing protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7NFZ5_9BACT)

HSP 1 Score: 132 bits (331), Expect = 5.810e-33
Identity = 98/276 (35.51%), Postives = 145/276 (52.54%), Query Frame = 1
Query:   16 GQLDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAALPQEI--VENLLLYHTLHGAIVEADIEK--DATLFTALNIDLRTQ-GAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNT--STITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMT--VSGEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLP 816
            G   T++ A+  A +   L   +G FTVF PTD+AF K   G       P+    ++ +L YH + G ++ AD+ K   A       ID+  + G V VD     +N+V+ D+ACSNG +HV+D V++P D    + T  A G      F  L  +L    +   L G +GP+T+ APTD+AFA L   T  S +   N+  L  VL YH+V G V A ++      TT+   + T  VS +GV  D+    A ++ATD+ +SNG++H I SV+LP
Sbjct:   58 GSFKTLVAAVKAAGLVETLKG-EGPFTVFAPTDEAFAKLPKGTVESLLKPENKAKLQAILTYHVVAGKVMAADVVKIKGAVSVQGQQIDVVVKDGKVKVDG----ANVVKTDIACSNGVIHVIDSVILPAD-KDIVDTAVAAGS-----FKTLAAALTAAGLVETLKG-EGPFTVFAPTDEAFAKLPAGTVESLLLPENKEKLIAVLTYHVVAGKVLASDVVKLKSATTVNGKEATIKVSDKGVTVDA----ARVVATDIEASNGVIHVIDSVILP 317          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: A0A3L7RRP5_9BACT (Fasciclin domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RRP5_9BACT)

HSP 1 Score: 131 bits (330), Expect = 8.500e-33
Identity = 94/276 (34.06%), Postives = 141/276 (51.09%), Query Frame = 1
Query:   16 GQLDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAALPQEI--VENLLLYHTLHGAIVEADIEK--DATLFTALNIDLR-TQGAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNT--STITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMT--VSGEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLP 816
            G   T++ A+  A +   L    G FTVF PTD+AF K   G       P+    ++ +L YH + G ++ AD+ K   A       +D+  T G V VD    ++ +++ D+ACSNG +HV+D V++P D     S   A      G F  L  +L    +   L G +GP+T+ APTD+AFA L   T  S +   NR  L  +L YH+V G V A ++       T+   ++   V   GV+ DS    A ++ATD+ +SNG++H I SV+LP
Sbjct:   60 GSFKTLVAAVKAAGLVETLKGD-GPFTVFAPTDEAFAKLPAGTVESLLKPENKAKLQAILTYHVVSGKVLAADVVKLKGAVTVQGQQVDIAVTDGTVTVD----KAKVLKTDIACSNGVIHVIDSVILPADSDIVDSAVAA------GSFKTLAAALTAAELVETLKG-EGPFTVFAPTDEAFAKLPAGTVESLLKPENREKLVAILTYHVVPGKVLASDVVKLKSAKTVNGKEVVIKVGDSGVMIDS----AKVVATDIETSNGVIHVIDSVILP 319          
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Match: UPI000479666E (fasciclin domain-containing protein n=1 Tax=Asinibacterium sp. OR53 TaxID=925409 RepID=UPI000479666E)

HSP 1 Score: 130 bits (327), Expect = 2.050e-32
Identity = 88/269 (32.71%), Postives = 153/269 (56.88%), Query Frame = 1
Query:   37 TALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGSMAALPQEIVENLLLYHTLHGAIVEADIEK--DATLFTALNIDL---RTQGAVLVDSLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVFDVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNT-STITGANRTALELVLRYHIVEGLVDAENIETASPLTTIAATQMTV---SGEGVLGDSQGRSADILATDLVSSNGIMHAISSVMLP 816
            TA+  A +   LS   G+FTVF P D AF  +G+   ++ +L  + ++N+LLYHTL   I+ AD+    +A++  A   +L   +    V V+ +     + +ADV  SNG +HV++ VL+PP       T +  G  Y  V  VL+ S   TN+++ LSG  GP+T+ APT+ AF + G ++ + I  A+   L  +L YH++   V + ++   + +TT+   ++T+   +G  V G+S   ++ I+AT+++++NG++H I  V+LP
Sbjct:   52 TAVVKAGLATTLSG-SGTFTVFAPDDNAFQTSGISASTIGSLSSDQLKNILLYHTLTSKIMSADVPAGPNASVKAANGGELFVTKNSSGVFVNGV----KVTQADVPASNGVIHVINRVLLPPAGNLVQVTQSDTGFSYL-VAAVLRASQGSTNVAQVLSG-NGPFTVFAPTNQAFRNAGFSSEAAINAADPNTLAAILTYHVIGARVFSSDLVNGAMVTTLNGGKVTIGLTNGATVKGNSNKTASAIIATNIMATNGVVHVIDQVLLP 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11349.870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB63_ECTSI1.570e-8152.36Putative adhesion lipoprotein n=2 Tax=Ectocarpus T... [more]
A0A7Y1TSC2_9ACTN9.630e-3634.52Fasciclin domain-containing protein n=1 Tax=Acidim... [more]
UPI0019A1EFFD9.900e-3535.87Fasciclin domain-containing protein n=1 Tax=Cytoph... [more]
A0A1E7EP57_9STRA1.370e-3333.45Beta-Ig-H3/fasciclin (Fragment) n=1 Tax=Fragilario... [more]
A0A2E7KCV9_9PLAN3.420e-3335.51Beta-Ig-H3/fasciclin n=6 Tax=Gimesia TaxID=1649453... [more]
A0A2E0ZKH1_9CHLR4.770e-3333.81Adhesion lipoprotein n=1 Tax=Anaerolineaceae bacte... [more]
A0A356ELT2_9PLAN5.480e-3332.85Beta-Ig-H3/fasciclin n=1 Tax=Planctomycetaceae bac... [more]
A0A3L7NFZ5_9BACT5.810e-3335.51Fasciclin domain-containing protein n=2 Tax=Planct... [more]
A0A3L7RRP5_9BACT8.500e-3334.06Fasciclin domain-containing protein n=1 Tax=Planct... [more]
UPI000479666E2.050e-3232.71fasciclin domain-containing protein n=1 Tax=Asinib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11349contigH-paniculata_contig11349:4048..5521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.9
Seed ortholog evalue8.4e-71
Seed eggNOG ortholog2880.D8LB63
KEGG koko:K19519
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of chemokine (C-C motif) ligand 2 secretion
EggNOG OGsCOG2335@1,KOG1437@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04516
Exons3
Model size825
Cds size825
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11349.870.1prot_H-paniculata_contig11349.870.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11349 4048..5521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.1712644-CDS-H-paniculata_contig11349:4047..41431622928843.1712644-CDS-H-paniculata_contig11349:4047..4143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11349 4048..4143 +
1691480641.5222313-CDS-H-paniculata_contig11349:4047..41431691480641.5222313-CDS-H-paniculata_contig11349:4047..4143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11349 4048..4143 +
1622928843.2011864-CDS-H-paniculata_contig11349:4388..48141622928843.2011864-CDS-H-paniculata_contig11349:4388..4814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11349 4389..4814 +
1691480641.533386-CDS-H-paniculata_contig11349:4388..48141691480641.533386-CDS-H-paniculata_contig11349:4388..4814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11349 4389..4814 +
1622928843.2194135-CDS-H-paniculata_contig11349:5218..55211622928843.2194135-CDS-H-paniculata_contig11349:5218..5521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11349 5219..5521 +
1691480641.5434735-CDS-H-paniculata_contig11349:5218..55211691480641.5434735-CDS-H-paniculata_contig11349:5218..5521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11349 5219..5521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11349.870.1

>prot_H-paniculata_contig11349.870.1 ID=prot_H-paniculata_contig11349.870.1|Name=mRNA_H-paniculata_contig11349.870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
MSEFYGQLDTVITALTTAMMDGNLSDPKGSFTVFIPTDKAFLKAGLGPGS
MAALPQEIVENLLLYHTLHGAIVEADIEKDATLFTALNIDLRTQGAVLVD
SLGERSNIVEADVACSNGYLHVVDGVLMPPDLMTSLSTYNAKGGPYEGVF
DVLQTSLDLTNMSRELSGLKGPYTLLAPTDDAFASLGLNTSTITGANRTA
LELVLRYHIVEGLVDAENIETASPLTTIAATQMTVSGEGVLGDSQGRSAD
ILATDLVSSNGIMHAISSVMLPFSL
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mRNA from alignment at H-paniculata_contig11349:4048..5521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11349.870.1 ID=mRNA_H-paniculata_contig11349.870.1|Name=mRNA_H-paniculata_contig11349.870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1474bp|location=Sequence derived from alignment at H-paniculata_contig11349:4048..5521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGAGTTCTATGGACAACTTGACACCGTCATCACTGCACTAACTAC GGCCATGATGGACGGGAACCTCTCGGATCCCAAGGGGTCCTTCACGGTGA GTTTGTTGTCGTTGATCTTGTTGATCTTGTTGTCCTTGTGTTTTAGTTAC AATTTCATGCAGCTTTGGTCGAGATCTTGGTTTTCGTGTATCTTTTTTTC TCGTGCGAGTGTTACAGATGAAGCTGCACAGTTCGTCGTGCTACTTGTAT TATTACAGATAGCTTTACGTAGACTGCCAGCAAAATGTTTCTCCACGCTC TATGTAAGTATTTTTTTTTCATGTGTGCAATGGACATTCAGGTGTTCATT CCAACCGACAAGGCTTTCCTGAAGGCAGGCCTAGGGCCTGGGTCAATGGC GGCGTTGCCACAGGAGATCGTGGAAAACTTGTTGCTTTACCACACTCTCC ACGGAGCAATCGTCGAGGCGGATATCGAGAAGGATGCCACGCTGTTCACG GCCCTCAACATTGATCTGCGTACCCAGGGCGCTGTGCTGGTGGACTCTTT GGGGGAACGGTCCAACATTGTCGAAGCCGATGTGGCGTGTTCGAATGGAT ACCTACACGTCGTTGACGGTGTTCTCATGCCTCCGGACCTGATGACGTCA CTTTCGACATACAACGCAAAGGGCGGGCCTTACGAGGGGGTGTTCGACGT GCTGCAAACGTCGCTCGACCTTACTAACATGTCACGGGAGCTGAGTGGTC TAAAGGGCCCGTATACGGTAAGTCTCGGCCGGAGCTCGGTCTCTTTCATT GGGCGGCAGCGCGGGCTGCTTTTATGTGCCATGCCTTCACCGACCGCTAG ATCATTGACTATGCTTGAAAGAGACGGAGCGTCGTTCTGTTGTTCTCGTA GGAACTATTGTCGACCATCGATAAGTTGCGTGGGGGAGGTTGGTTGTGTC GTTGGGCGTTGAACGAAATGATTGGTGCTCGCGGTTGCACGAACAGTGGG AAGGGCTCGTGTTGTAATTTCAATTTATTAAGGCCGCTATGAACGAAGTC AAGTCATCCTCCAACGCGCTAGGTGTCAGGCGACGATGCTCCCTCCTCTC TGACCCAGTCACATTCTCCCGACGTGATACCCCCCCCTTCCCCCCCCGCG GCCGCCGCTACTACAACGCAGCTGCTAGCGCCAACCGACGACGCATTCGC ATCGCTCGGTCTTAACACCTCAACGATCACGGGAGCAAACAGAACGGCGC TTGAACTCGTGCTTCGCTATCACATTGTGGAAGGTCTGGTAGATGCGGAA AACATCGAAACCGCAAGCCCCCTGACGACAATCGCCGCCACGCAGATGAC AGTTTCAGGCGAAGGAGTACTAGGAGACTCACAGGGGAGATCGGCGGACA TCTTGGCCACGGACCTAGTATCGAGCAACGGTATCATGCATGCCATCAGT TCCGTCATGTTGCCGTTCTCCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig11349:4048..5521+

>mRNA_H-paniculata_contig11349.870.1 ID=mRNA_H-paniculata_contig11349.870.1|Name=mRNA_H-paniculata_contig11349.870.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig11349:4048..5521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGAGTTCTATGGACAACTTGACACCGTCATCACTGCACTAACTAC
GGCCATGATGGACGGGAACCTCTCGGATCCCAAGGGGTCCTTCACGATGT
CAGAGTTCTATGGACAACTTGACACCGTCATCACTGCACTAACTACGGCC
ATGATGGACGGGAACCTCTCGGATCCCAAGGGGTCCTTCACGGTGTTCAT
TCCAACCGACAAGGCTTTCCTGAAGGCAGGCCTAGGGCCTGGGTCAATGG
CGGCGTTGCCACAGGAGATCGTGGAAAACTTGTTGCTTTACCACACTCTC
CACGGAGCAATCGTCGAGGCGGATATCGAGAAGGATGCCACGCTGTTCAC
GGCCCTCAACATTGATCTGCGTACCCAGGGCGCTGTGCTGGTGGACTCTT
TGGGGGAACGGTCCAACATTGTCGAAGCCGATGTGGCGTGTTCGAATGGA
TACCTACACGTCGTTGACGGTGTTCTCATGCCTCCGGACCTGATGACGTC
ACTTTCGACATACAACGCAAAGGGCGGGCCTTACGAGGGGGTGTTCGACG
TGCTGCAAACGTCGCTCGACCTTACTAACATGTCACGGGAGCTGAGTGGT
CTAAAGGGCCCGTATACGGTGTTCATTCCAACCGACAAGGCTTTCCTGAA
GGCAGGCCTAGGGCCTGGGTCAATGGCGGCGTTGCCACAGGAGATCGTGG
AAAACTTGTTGCTTTACCACACTCTCCACGGAGCAATCGTCGAGGCGGAT
ATCGAGAAGGATGCCACGCTGTTCACGGCCCTCAACATTGATCTGCGTAC
CCAGGGCGCTGTGCTGGTGGACTCTTTGGGGGAACGGTCCAACATTGTCG
AAGCCGATGTGGCGTGTTCGAATGGATACCTACACGTCGTTGACGGTGTT
CTCATGCCTCCGGACCTGATGACGTCACTTTCGACATACAACGCAAAGGG
CGGGCCTTACGAGGGGGTGTTCGACGTGCTGCAAACGTCGCTCGACCTTA
CTAACATGTCACGGGAGCTGAGTGGTCTAAAGGGCCCGTATACGCTGCTA
GCGCCAACCGACGACGCATTCGCATCGCTCGGTCTTAACACCTCAACGAT
CACGGGAGCAAACAGAACGGCGCTTGAACTCGTGCTTCGCTATCACATTG
TGGAAGGTCTGGTAGATGCGGAAAACATCGAAACCGCAAGCCCCCTGACG
ACAATCGCCGCCACGCAGATGACAGTTTCAGGCGAAGGAGTACTAGGAGA
CTCACAGGGGAGATCGGCGGACATCTTGGCCACGGACCTAGTATCGAGCA
ACGGTATCATGCATGCCATCAGTTCCGTCATGTTGCCGTTCTCCCTCCTG
CTAGCGCCAACCGACGACGCATTCGCATCGCTCGGTCTTAACACCTCAAC
GATCACGGGAGCAAACAGAACGGCGCTTGAACTCGTGCTTCGCTATCACA
TTGTGGAAGGTCTGGTAGATGCGGAAAACATCGAAACCGCAAGCCCCCTG
ACGACAATCGCCGCCACGCAGATGACAGTTTCAGGCGAAGGAGTACTAGG
AGACTCACAGGGGAGATCGGCGGACATCTTGGCCACGGACCTAGTATCGA
GCAACGGTATCATGCATGCCATCAGTTCCGTCATGTTGCCGTTCTCCCTC
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