mRNA_H-paniculata_contig11340.868.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11340.868.1
Unique NamemRNA_H-paniculata_contig11340.868.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11340.868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11340contigH-paniculata_contig11340:1137..5681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size1829
Cds size1005
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11340.868.1prot_H-paniculata_contig11340.868.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11340 1808..2812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928842.925315-UTR-H-paniculata_contig11340:1136..18071622928842.925315-UTR-H-paniculata_contig11340:1136..1807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11340 1137..1807 -
1691480641.459822-UTR-H-paniculata_contig11340:1136..18071691480641.459822-UTR-H-paniculata_contig11340:1136..1807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11340 1137..1807 -
1622928842.9580123-UTR-H-paniculata_contig11340:2812..29131622928842.9580123-UTR-H-paniculata_contig11340:2812..2913Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11340 2813..2913 -
1691480641.476014-UTR-H-paniculata_contig11340:2812..29131691480641.476014-UTR-H-paniculata_contig11340:2812..2913Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11340 2813..2913 -
1622928842.9735627-UTR-H-paniculata_contig11340:5629..56811622928842.9735627-UTR-H-paniculata_contig11340:5629..5681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11340 5630..5681 -
1691480641.4846845-UTR-H-paniculata_contig11340:5629..56811691480641.4846845-UTR-H-paniculata_contig11340:5629..5681Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11340 5630..5681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928842.943548-CDS-H-paniculata_contig11340:1807..28121622928842.943548-CDS-H-paniculata_contig11340:1807..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11340 1808..2812 -
1691480641.4679923-CDS-H-paniculata_contig11340:1807..28121691480641.4679923-CDS-H-paniculata_contig11340:1807..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11340 1808..2812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11340.868.1

>prot_H-paniculata_contig11340.868.1 ID=prot_H-paniculata_contig11340.868.1|Name=mRNA_H-paniculata_contig11340.868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=335bp
MMPPNTMAAVAALGLSWRTCQLLIAPAFGSAAATPAVAEASISAQSNSHE
SWYGTMPPTKTTTSSRMIRRVGLGTRVPAGVEEARQLRQLGFLVPKRDNQ
GVERDNKSAKRDKEGVKSTTNPGKIRRVTRTPPHGSAGERTTTRDGSISS
STVTRRNTNNATRKTTVTYNKATVTGASTASAKSNIPRVAFFPGGGRGCS
PSVPYLACVATCGEDKVGNPGGISSRDRTSRRPPSVATDSEPDSEGADGI
AAVAVNRNAFSFPLISGMRGGGPGGYRWFTGYSDTEEEDEEDEEEEDADC
ATDYEMDSEVDRLSEDEEGMTEADCEDDDKNGEF*
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mRNA from alignment at H-paniculata_contig11340:1137..5681-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11340.868.1 ID=mRNA_H-paniculata_contig11340.868.1|Name=mRNA_H-paniculata_contig11340.868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4545bp|location=Sequence derived from alignment at H-paniculata_contig11340:1137..5681- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGAATCCTGCAAGGGCAACCTATCCCGCTTTACCTGCCACGATTTAG
AGGTAGGTACGGTGTCGCTGCGGGAATGCAGATAGTGTGAAAATATTGTA
CATATACATGAAAGTTTTTTGTCTCTTGAATTGTGTCATCTCCTTGAACT
TCTGTTACTCTCATTGACTCACAGGGAGGCTGTTGCAGGACTTGAGTTTT
CAAGAATTCAGCACAGTAGACAGACGGATTACACTATTGTGGTGCAACCT
GTAGACACGAGGGGAACATGTCAGGAGATGTTGCGGGGGCAATTGTACTG
GCTGCCATCGTGTACGCAGATTTTTACACCTAACCACGTACACGGTTGGC
CCGGAAATTGCCTCAGCTTGCTGGTGACCGATGCTAGCTAAACTTCTCTC
TTTTGATACTAGAGGGATCAAGGCTATCTCTCTGTTGCTGTAATGTTTGA
AAAACGACCACTGGGTCGTACAATACGACATATAACAGCATATTGGTGAA
AAGTCGGATATAAACAAAACACACAATATATACTCTCCGTCACCTACCGT
ATTACTGCCCTTCTCGGATCAGGGGATGATAGCACCCATGTAACCTAGCT
TAGATATACCACCCCGCTCAAGCAGGCGGCAGGGGTGGTAAAAACAGGGG
GCGGTGAAAGCATACATCCTACTCCATCTTGCGCTGTGCATCCGCGTTGT
GTCTTGCGTGTGTGGCCATAACTCTTGCCAGCAGTCTCTGTACAAAGTAT
TGTACCAAGCGCCATTGTTTCAATATGCTTCAAGATAATTAATTTCATAT
GCCAAATTTCTTAGAATTCTATTGAAACATACATCAGGCTCGATATCTTC
GGGCATTTTTATTTATTGATAAGCGGGCGGGTAGAGAGAGCCGTGCTTTT
TCATGGCAACTCGCTCGCCTGTTGGCAGACAGCGTCTTTATTATCCAGTA
GTGTTAAGACCAGTCATAGTGCTTTTCCCGTCAACTAGTGACACCATACC
GACCTCAGTAGACAGTGTCTGTTGAGTTGCCTATGCTACAACTGTGGTGT
TTCCTTTTTCCAATACCTGGCCCGGAGGGTGCCGTGTCCAACAATCTTCA
CGAATACCTCTTTGGGAACATAAGCGCGATTTTGCGCGTTTTGGCAATCC
CTCCATACGCAAGCAACCGGCAGAATTGCCCATGTCAATACCGCACACCC
ACCGTAAGTGACCGCGGAACCGGATGATAGTTCAGCAATTCACGCGTTAT
GTGACTTACCTCGGTGCGTAATAGTGAGAGTATATGCGGGAAAGGGCTTC
TAGTGAGCATTCATGTCTGACAGGAATTCTGGCGAATTACCCCCCCTCCC
CCTCACTTCCCCCAGTGTACTAAGGAAAATCGAAGGATGCGATAGAGAAA
CACTTGAATGCCGGTATTTCGAAAAAAAAAAAGGCTGTGCAAGTACCGGT
TCTAGTAGATAGATATTTGGTCTGAACACGCAAGGGTTGAGGTAGATAGG
GTAGGTAAGAACGTGTTTGAGCCACGTTTAGCGACGTAGGAAGGAGAGAT
TGACTATCGGAAATCGCTCCGATAGGAACGAAGATCCGTCCCCCCGAGGA
CTACGTGCGTGGTCAATGGCAAAACAACTACGACATGCAAAGCACCACTG
CCCCCCCCCCCCTCCCTTCGTCCCTGTCGGTTGTCGGTTATGGCAGTCAA
TGGTTCAACAGCTCCCGGCATGCACTACATGAGTCCCCCCACCCACACTT
TCCACTACCCTCTCTCCCCCCAGTCCTGTTTGGGGGCATGGATAGAAGGT
GCCTGTGTTGAAGAGATACGAATACCCTCGCTTTGGCAAACTTTTCGTGT
TCGTGCTCTCGAGCTGGTTCAACGTACTATATGGGCTGAGAGCTCGGACC
ACGGCGCTGGTTCAGCAACAGCGGCCAGACACATCGCAAGTACCTACTAA
ATCGGCAGTAAAGCTCACGTGGAGATATAGCTATGCTATAGTTCATTGTA
CCTCGTGTTTGCTGCCTGTACTGAACGACCATCATTTTCCGTTCAGGACC
GTGCTAAACGAGCGAGTCTGATTTTCCTTTTTCCGATTTGTTTGAGGTTA
GCAAAATGTATATATAACCCCGCGAACCCTTGTATTTGAATATAAATTCG
CACGTAAACCGCAATTTCCAAGTGCGGAGGTCACTATGGTATACAAACCT
CTCCAAGCACCTTAACGTCGGAAATGCTAAAAATCAGGTCGCTCGTTTCC
AAGTAAGGGTTTGCAATTTCCAATCGCAAATGGTTGCGGTACATACATTC
TCCCAACAAAAATCAGACATGAAAACGAAAGGTTTTTAGGCTTGCTGGTG
TAGCATGGCCCCTTTACGTGGATGTATCACCAAATTGTCATTTTCCACCA
AAAACAGCAGTGCACCCGCCACGGCTACGCCCGTGCTCTCATAATTCAGT
GTTTTGCTTCGATTCCTTTTTTTATATTTTCTTGAGTATAGTTTTGATAT
GTTGTTCCGTATCTATCATAAATTACCGGTACCATTAATCACTACCTTCT
TCTCCAGGGAAGCCCATAGACGAGGCGTTTTTTCTTGTTTTTCACGAAAG
TGTTTGTAGGTAAAACAGGCGTTCTTCGTCTCCAAACAGCTGAATCCCTC
AGCGTTTTTTTTTTTGTTTTTTTTTTATGTTTTAGTAGGGAGTGCCGTCC
ATACTTGACACAGACACCTTGACCTCCTGATGCACCTCAACCATGTCCTT
CTCTTATCTCACTCGAAGGTACATAGATGAACGATCTCATCTGACCGCCT
ATCACCACGATCGTCATTATCATCGTCATCGTCTTCGCGAAACGTGAGAC
CTTCTCGCCTGGTGGTCGCATGATGCCACCCAACACCATGGCCGCAGTAG
CAGCACTGGGCTTATCCTGGCGGACCTGTCAATTGTTGATCGCCCCAGCC
TTCGGCTCTGCCGCAGCAACACCGGCGGTCGCCGAAGCGTCGATATCAGC
GCAGAGCAATTCCCACGAAAGTTGGTACGGAACGATGCCACCTACCAAGA
CTACCACCTCCAGCCGCATGATTCGTCGTGTTGGTCTGGGCACGAGGGTA
CCGGCCGGCGTAGAGGAGGCTCGACAGCTGAGGCAACTAGGATTTCTTGT
GCCGAAACGCGACAACCAAGGCGTGGAACGGGACAACAAGAGTGCGAAAC
GCGATAAAGAGGGTGTAAAGAGCACCACTAATCCGGGAAAAATCCGAAGA
GTAACAAGGACACCTCCGCACGGGTCAGCCGGAGAGAGGACCACAACAAG
GGACGGTAGTATTTCCAGCAGCACCGTCACTCGTCGAAACACGAACAATG
CAACACGTAAAACAACTGTGACGTATAACAAAGCTACTGTTACGGGAGCC
AGTACGGCATCTGCTAAAAGCAACATTCCCCGAGTGGCGTTTTTTCCGGG
CGGAGGGAGGGGATGCTCACCCAGCGTCCCCTACCTAGCATGCGTAGCTA
CCTGTGGCGAAGACAAGGTTGGAAACCCTGGTGGTATCAGTTCCAGGGAC
CGCACAAGCCGGCGACCACCATCGGTAGCGACGGATTCTGAACCGGATTC
CGAGGGAGCTGACGGAATAGCAGCTGTAGCGGTGAACAGAAATGCATTTT
CGTTTCCATTAATATCGGGAATGCGGGGAGGTGGACCCGGGGGCTATCGG
TGGTTTACCGGTTACAGTGATACGGAAGAGGAGGACGAGGAGGACGAGGA
GGAAGAAGACGCGGATTGTGCAACGGATTATGAGATGGATTCGGAAGTTG
ACCGATTATCGGAAGATGAGGAAGGAATGACCGAGGCGGATTGCGAGGAT
GATGACAAGAATGGTGAGTTTTAGGTGTGCGTGGCAATATCGTGTTAAGT
GCCAAGTGTTTTGAGTGTCCCCACATTAGTAAATCTCAATCCTCTGGTGA
AAAACCGAACCTTGTGATGACCGAAATATCACACCATGGTATTTATTTGT
AAACAAAAGTCAAGAATGACGAGAGCACGGCAAACGCGCATTAAATAATG
ACACATTACCAAGAATACAAGGAATACTAAAACAGATTTAAGGGGTCTAC
GTTACAAGTCTCAATCCCTTAGAACCCGGAACCTCCCTTAACGGACGGAA
GTAATATTTTGAGGATAACGACCGCTCGTGAATAATGACCATTACATCGG
CAAGCGCGCCGTAGATCACAATATGCTGCCATGAATGCTGAAAAGGCCCT
GCAATAGATGTGGAGCTATGCCACAAATATCAGTTCCTTCGGAACTGGGC
CTCACCAAGACCGAATAATTTCGTTTCACGTCTATGTCACAACCACCGCT
CCTGATTGTTACGAGTACATGAAAAATACACCGCAGATACATGAAGTATT
GTCCATAATACTAAGCAGCCCTAGAGATGTGGTGAAGGGAGACCACCAGA
AAGAGTTTATCCCCTGGACAAATTCGAATACCCGACGTACTCGCCACAAT
TTTTTTTAAGTATTCGCCTGAGTTTCAGAATGAGCGAACTCATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig11340:1137..5681-

>mRNA_H-paniculata_contig11340.868.1 ID=mRNA_H-paniculata_contig11340.868.1|Name=mRNA_H-paniculata_contig11340.868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2010bp|location=Sequence derived from alignment at H-paniculata_contig11340:1137..5681- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCCACCCAACACCATGGCCGCAGTAGCAGCACTGGGCTTATCCTG
GCGGACCTGTCAATTGTTGATCGCCCCAGCCTTCGGCTCTGCCGCAGCAA
CACCGGCGGTCGCCGAAGCGTCGATATCAGCGCAGAGCAATTCCCACGAA
AGTTGGTACGGAACGATGCCACCTACCAAGACTACCACCTCCAGCCGCAT
GATTCGTCGTGTTGGTCTGGGCACGAGGGTACCGGCCGGCGTAGAGGAGG
CTCGACAGCTGAGGCAACTAGGATTTCTTGTGCCGAAACGCGACAACCAA
GGCGTGGAACGGGACAACAAGAGTGCGAAACGCGATAAAGAGGGTGTAAA
GAGCACCACTAATCCGGGAAAAATCCGAAGAGTAACAAGGACACCTCCGC
ACGGGTCAGCCGGAGAGAGGACCACAACAAGGGACGGTAGTATTTCCAGC
AGCACCGTCACTCGTCGAAACACGAACAATGCAACACGTAAAACAACTGT
GACGTATAACAAAGCTACTGTTACGGGAGCCAGTACGGCATCTGCTAAAA
GCAACATTCCCCGAGTGGCGTTTTTTCCGGGCGGAGGGAGGGGATGCTCA
CCCAGCGTCCCCTACCTAGCATGCGTAGCTACCTGTGGCGAAGACAAGGT
TGGAAACCCTGGTGGTATCAGTTCCAGGGACCGCACAAGCCGGCGACCAC
CATCGGTAGCGACGGATTCTGAACCGGATTCCGAGGGAGCTGACGGAATA
GCAGCTGTAGCGGTGAACAGAAATGCATTTTCGTTTCCATTAATATCGGG
AATGCGGGGAGGTGGACCCGGGGGCTATCGGTGGTTTACCGGTTACAGTG
ATACGGAAGAGGAGGACGAGGAGGACGAGGAGGAAGAAGACGCGGATTGT
GCAACGGATTATGAGATGGATTCGGAAGTTGACCGATTATCGGAAGATGA
GGAAGGAATGACCGAGGCGGATTGCGAGGATGATGACAAGAATGGTGAGT
TTTAGATGATGCCACCCAACACCATGGCCGCAGTAGCAGCACTGGGCTTA
TCCTGGCGGACCTGTCAATTGTTGATCGCCCCAGCCTTCGGCTCTGCCGC
AGCAACACCGGCGGTCGCCGAAGCGTCGATATCAGCGCAGAGCAATTCCC
ACGAAAGTTGGTACGGAACGATGCCACCTACCAAGACTACCACCTCCAGC
CGCATGATTCGTCGTGTTGGTCTGGGCACGAGGGTACCGGCCGGCGTAGA
GGAGGCTCGACAGCTGAGGCAACTAGGATTTCTTGTGCCGAAACGCGACA
ACCAAGGCGTGGAACGGGACAACAAGAGTGCGAAACGCGATAAAGAGGGT
GTAAAGAGCACCACTAATCCGGGAAAAATCCGAAGAGTAACAAGGACACC
TCCGCACGGGTCAGCCGGAGAGAGGACCACAACAAGGGACGGTAGTATTT
CCAGCAGCACCGTCACTCGTCGAAACACGAACAATGCAACACGTAAAACA
ACTGTGACGTATAACAAAGCTACTGTTACGGGAGCCAGTACGGCATCTGC
TAAAAGCAACATTCCCCGAGTGGCGTTTTTTCCGGGCGGAGGGAGGGGAT
GCTCACCCAGCGTCCCCTACCTAGCATGCGTAGCTACCTGTGGCGAAGAC
AAGGTTGGAAACCCTGGTGGTATCAGTTCCAGGGACCGCACAAGCCGGCG
ACCACCATCGGTAGCGACGGATTCTGAACCGGATTCCGAGGGAGCTGACG
GAATAGCAGCTGTAGCGGTGAACAGAAATGCATTTTCGTTTCCATTAATA
TCGGGAATGCGGGGAGGTGGACCCGGGGGCTATCGGTGGTTTACCGGTTA
CAGTGATACGGAAGAGGAGGACGAGGAGGACGAGGAGGAAGAAGACGCGG
ATTGTGCAACGGATTATGAGATGGATTCGGAAGTTGACCGATTATCGGAA
GATGAGGAAGGAATGACCGAGGCGGATTGCGAGGATGATGACAAGAATGG
TGAGTTTTAG
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