mRNA_H-paniculata_contig11326.854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11326.854.1
Unique NamemRNA_H-paniculata_contig11326.854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: A0A6H5K2A4_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A4_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.560e-35
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 LLQALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            LL+ALR VFGH  FRG+QEEAMRE+ SG+DALVVMPTGGGKSLCYQLPAVV+DGVCVVVSPLIALTEDQ
Sbjct:   19 LLRALRDVFGHQGFRGKQEEAMREISSGHDALVVMPTGGGKSLCYQLPAVVADGVCVVVSPLIALTEDQ 87
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.860e-31
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 LLQALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            LL+ALR VFGH  FRG+QEEAMREV SG+DALVVMPTGGGKSLCYQLPAVV+DGVCVV+SPLIALTEDQ
Sbjct:   19 LLRALRDVFGHQGFRGKQEEAMREVSSGHDALVVMPTGGGKSLCYQLPAVVADGVCVVISPLIALTEDQ 87
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: UPI001B35B14E (DEAD/DEAH box helicase n=1 Tax=Micromonospora sp. D75 TaxID=2824885 RepID=UPI001B35B14E)

HSP 1 Score: 99.0 bits (245), Expect = 1.210e-24
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    4 LQALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            L  LR+VFG+D FRG Q++ +  V+SG DALV+MPTGGGKSLCYQ+PA+V DGV VVVSPLIAL +DQ
Sbjct:   23 LDVLRRVFGYDAFRGFQQDVVEHVVSGGDALVLMPTGGGKSLCYQIPALVRDGVAVVVSPLIALMQDQ 90
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: UPI000A6C5D70 (DEAD/DEAH box helicase n=1 Tax=Marinifilum fragile TaxID=570161 RepID=UPI000A6C5D70)

HSP 1 Score: 94.0 bits (232), Expect = 7.950e-24
Identity = 41/66 (62.12%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   10 ALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            AL++ FG+D+FR  QE+ +  V+ GNDALV+MPTGGGKS+CYQ+PA++ +GV +VVSPLIAL +DQ
Sbjct:    7 ALKKYFGYDKFRPLQEKVINSVLQGNDALVIMPTGGGKSICYQIPAIIMEGVTIVVSPLIALMKDQ 72
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: A0A495JD63_9ACTN (DNA helicase n=1 Tax=Micromonospora pisi TaxID=589240 RepID=A0A495JD63_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 2.850e-23
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    4 LQALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            LQ LR+VFG+D FRG Q+E + +V+ G DALV+MPTGGGKSLCYQ+PA+V DGV VVVSPLIAL +DQ
Sbjct:   13 LQVLRRVFGYDAFRGSQQEIIDQVVGGGDALVLMPTGGGKSLCYQIPALVRDGVAVVVSPLIALMQDQ 80
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: A0A1E4LBS9_9GAMM (ATP-dependent DNA helicase RecQ (Fragment) n=2 Tax=Xanthomonadaceae bacterium SCN 69-48 TaxID=1660171 RepID=A0A1E4LBS9_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 3.750e-23
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    4 LQALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            L  LR+VFGHD FRGRQ+E +  V+ G DALV+MPTGGGKSLCYQLPA++ DG  VVVSPLIAL +DQ
Sbjct:    6 LDTLRRVFGHDAFRGRQQEIVARVVEGGDALVLMPTGGGKSLCYQLPALLRDGCGVVVSPLIALMQDQ 73
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: A0A2V8CA70_9BACT (ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8CA70_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 3.790e-23
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   13 LRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            LR+VFG D FRG+Q E +  V++G DA+V+MPTGGGKS+CYQ+PA++  G+CVVVSPLIAL +DQ
Sbjct:   13 LREVFGFDSFRGQQLEIVEHVVAGGDAVVLMPTGGGKSVCYQIPALLRPGICVVVSPLIALMKDQ 77
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BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: A0A2E2EK60_9FLAO (ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2E2EK60_9FLAO)

HSP 1 Score: 92.4 bits (228), Expect = 3.920e-23
Identity = 37/65 (56.92%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   13 LRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            L+ +FG + F+G+QE+ ++ ++ GND++V+MPTGGGKS+CYQLPA++SDGV +V+SPLIAL ++Q
Sbjct:   12 LKDIFGFNSFKGKQEQIIQNLLKGNDSMVIMPTGGGKSMCYQLPALISDGVAIVISPLIALMKNQ 76
[Close]
BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: UPI001960FFC7 (DNA helicase RecQ n=1 Tax=Sutterella massiliensis TaxID=1816689 RepID=UPI001960FFC7)

HSP 1 Score: 100 bits (248), Expect = 5.310e-23
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:   10 ALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            AL+QVFG+D FRG+QE A+  V++G DALV+MPTGGGKSLCYQ+PA++ DGV +VVSPLIAL +DQ
Sbjct:   10 ALKQVFGYDNFRGQQEAAVETVVAGGDALVLMPTGGGKSLCYQIPALLRDGVAIVVSPLIALMQDQ 75
[Close]
BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Match: A0A2Z6ICM6_9BURK (DNA helicase n=1 Tax=Sutterella megalosphaeroides TaxID=2494234 RepID=A0A2Z6ICM6_9BURK)

HSP 1 Score: 99.8 bits (247), Expect = 7.270e-23
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    7 QALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAVVSDGVCVVVSPLIALTEDQ 207
            +ALR+VFG+D FRG QEE ++ V+ G DALV+MPTGGGKSLCYQ+PA++ DGV VV+SPLIAL +DQ
Sbjct:    9 EALRRVFGYDSFRGFQEEVVKTVVEGRDALVLMPTGGGKSLCYQIPALLRDGVAVVISPLIALMQDQ 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11326.854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2A4_9PHAE4.560e-3586.96DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FXK3_ECTSI5.860e-3186.96ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
UPI001B35B14E1.210e-2469.12DEAD/DEAH box helicase n=1 Tax=Micromonospora sp. ... [more]
UPI000A6C5D707.950e-2462.12DEAD/DEAH box helicase n=1 Tax=Marinifilum fragile... [more]
A0A495JD63_9ACTN2.850e-2370.59DNA helicase n=1 Tax=Micromonospora pisi TaxID=589... [more]
A0A1E4LBS9_9GAMM3.750e-2370.59ATP-dependent DNA helicase RecQ (Fragment) n=2 Tax... [more]
A0A2V8CA70_9BACT3.790e-2364.62ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax... [more]
A0A2E2EK60_9FLAO3.920e-2356.92ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax... [more]
UPI001960FFC75.310e-2369.70DNA helicase RecQ n=1 Tax=Sutterella massiliensis ... [more]
A0A2Z6ICM6_9BURK7.270e-2368.66DNA helicase n=1 Tax=Sutterella megalosphaeroides ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11326contigH-paniculata_contig11326:3404..5435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue4.6e-26
Seed eggNOG ortholog2880.D7FXK3
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons2
Model size209
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.8225698-CDS-H-paniculata_contig11326:3403..35531622928840.8225698-CDS-H-paniculata_contig11326:3403..3553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11326 3404..3553 -
1691480640.5165062-CDS-H-paniculata_contig11326:3403..35531691480640.5165062-CDS-H-paniculata_contig11326:3403..3553Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11326 3404..3553 -
1622928840.8390887-CDS-H-paniculata_contig11326:5378..54351622928840.8390887-CDS-H-paniculata_contig11326:5378..5435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11326 5379..5435 -
1691480640.5270948-CDS-H-paniculata_contig11326:5378..54351691480640.5270948-CDS-H-paniculata_contig11326:5378..5435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11326 5379..5435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11326.854.1prot_H-paniculata_contig11326.854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11326 3404..5435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11326.854.1

>prot_H-paniculata_contig11326.854.1 ID=prot_H-paniculata_contig11326.854.1|Name=mRNA_H-paniculata_contig11326.854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
LLQALRQVFGHDQFRGRQEEAMREVMSGNDALVVMPTGGGKSLCYQLPAV
VSDGVCVVVSPLIALTEDQ
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mRNA from alignment at H-paniculata_contig11326:3404..5435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11326.854.1 ID=mRNA_H-paniculata_contig11326.854.1|Name=mRNA_H-paniculata_contig11326.854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2032bp|location=Sequence derived from alignment at H-paniculata_contig11326:3404..5435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCCAAGCTTTGCGTCAAGTTTTCGGCCACGATCAATTCCGCGGGAG
ACAAGAGGTATGCCGTGCTGATCGAGTAAGCTGTCTTACTCCAAATACAT
CCCATATCATGTCTTCCGCTTTTTTTTTCTTTTTTTTAAGACTCTTTTTG
GTGGTATCGTCGAAGTTCATTTTTTTTTTTTGTAGTTTGCTTTTTTTTGT
CATGATACTCGGATTATGTGTCACAATTCTTGAAAATTCATAAATGTTGA
TACTCACGAAAAAAAAAAAAAAAAATCCAACGATGCTCCATAGAGTAAAA
GCTCAGATTGATGTCCCCATTAATGAAATATGTTAAGGCGGTCGATGGTT
ATCGACGGTTCGGAACGTGGGGCTGTTTTCGAAAAAAAAATTAGTAAGAC
TCATAAAGCCGAAATATTCATGGACAATCTGTGTCTATCTTCCTTTCGAG
CATTCGTGAAATAGAGGAATATGTATGCATATGAAGGTATTTGTGCATGT
ACGGGAGTACATATGTACGTATGCTTGTATTACCTTAAGACCCTTTGATA
TCGCACCTCCTCTACTTTCTTTTTTTTCTTTCAAAGTCGAATTTTTCGAC
AATCACCATCCATGCTCATGACACCGAGAGCGGTATCGTTGTAAAGGTCT
TGTTGAGAGCTTTCGATAGACTCTTACCAGTATAACAAATTGTAATGATT
GCTACTAAAAAAACGGGGGATAATTTTCTTGTTTTGGCATTTTGGGGCGT
TTCTGTCGTCTTCTTGAATGAGGCATTTTCAGTGTGAATTAACGCAACAT
TTCAATATCAATATCTGGTACGGTTGGTGTACCGATTTCAAAAGACAAGA
TTTAAGAGGAATACAGAGAGTACATAAGAGAGCGACTTTGGGTTGGCACA
CTTATTTATTATATCACAACTGATTTTAACTCCTTCCGGGCTTGGTATCA
TTTCGAAACGCCGTTTTAGCTATATACCAAAACACACTTATGGATAATAA
CGAAATGGAGGCTCATGTCCACATGAAAACCTGTAAATATCTAAGAGAAA
AAGTTGTAGCTGTTGTTGACCATCGCAACGAACATCGAAATCGACATCCA
GCGAGAGTGACATGTCAGCATTGGGTGCATTTGAAAGAGCTACGAAGTGC
CATGCTTTGTTCGAGAATGTGTGTCCTGTTTTGCACTGTGAAACGAGATA
GCGAGCATAAAAAACTGATGTCGCGGGCACAAATCTGTGTCGCCAGCACA
GATTTTCCCTCGTATACAGCCTCTTGAGTCAAATTGGGCAGCTTTTCCAG
GGCTTCCCTGCAGGCCTCCAATACCTGCACGCCACCTTACGGAGTGTCCA
TATGTATGGGTTATGACCTCCACCCCTAATTGCTACGCAAAAAAGGCACG
ATTACACTTTTTTTTGTTTGGTTGATTTCTTCACGCTAGAATGGCGTTTT
TCCAAGTCCCGTTGGTCACCCCGCAAAAAAACAAAAAAACGTCTGTATCC
CAGTTTGTTTTTTTTTCGCAGATTTGATAGCGCTGTAGCCACCAAAGGAT
CAATACACCCGATTCATGTCTTAAAAGAAACAGGATTTTTTTTTTTTGGA
GTTTCAAAATTGAGAGTTCTCAATAACAGATGTCAAAGGGCTTAGTCCTA
AAAGGATTAAGAGACGCTCATGATATAGTTATTTATCTGATTTCGGTGTG
GTACATCTGTCTCTTACAAATTGGCACAACCATCATAGCTCCCGATAATC
TAATTTCGAGGATTCCTCAACCGTTACTATCAATGTATACTCCCGACACC
GGTGCTTCTGCTAGATTTTGCCTTACCCAGTGCCTAGCCTCCGCCTAACC
GCTTGCAATGAATGAATGCATGGGCGGCGCAGGAGGCCATGCGGGAGGTG
ATGTCCGGTAACGACGCGCTCGTCGTGATGCCTACCGGAGGAGGGAAATC
CTTGTGCTACCAGCTGCCTGCCGTGGTTTCCGACGGAGTCTGCGTCGTAG
TCAGCCCGCTTATCGCCCTCACAGAAGATCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11326:3404..5435-

>mRNA_H-paniculata_contig11326.854.1 ID=mRNA_H-paniculata_contig11326.854.1|Name=mRNA_H-paniculata_contig11326.854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig11326:3404..5435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTCCAAGCTTTGCGTCAAGTTTTCGGCCACGATCAATTCCGCGGGAG
ACAAGAGCTTCTCCAAGCTTTGCGTCAAGTTTTCGGCCACGATCAATTCC
GCGGGAGACAAGAGGAGGCCATGCGGGAGGTGATGTCCGGTAACGACGCG
CTCGTCGTGATGCCTACCGGAGGAGGGAAATCCTTGTGCTACCAGCTGCC
TGCCGTGGTTTCCGACGGAGTCTGCGTCGTAGTCAGCCCGCTTATCGCCC
TCACAGAAGATCAGGAGGCCATGCGGGAGGTGATGTCCGGTAACGACGCG
CTCGTCGTGATGCCTACCGGAGGAGGGAAATCCTTGTGCTACCAGCTGCC
TGCCGTGGTTTCCGACGGAGTCTGCGTCGTAGTCAGCCCGCTTATCGCCC
TCACAGAAGATCAG
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