mRNA_H-paniculata_contig11324.853.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11324.853.1
Unique NamemRNA_H-paniculata_contig11324.853.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: A0A8F0FEY2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FEY2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 9.790e-25
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            SV LNFLIFSVYLD+IMGQI A+FILAVAACESSVGLAIILVYYRVRGSI VDQA+LLK
Sbjct:   41 SVSLNFLIFSVYLDDIMGQIFAVFILAVAACESSVGLAIILVYYRVRGSIRVDQAALLK 99
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: A0A4Y5T8D2_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T8D2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.620e-23
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            S+ LNFLIFSVYLD+I+GQI A+FIL VAACESS+GLAIILVYYRVRGSI VDQASLLK
Sbjct:   41 SISLNFLIFSVYLDDIIGQIFALFILTVAACESSIGLAIILVYYRVRGSIRVDQASLLK 99
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: Q2TUC4_DICDH (NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TUC4_DICDH)

HSP 1 Score: 91.7 bits (226), Expect = 9.340e-23
Identity = 47/59 (79.66%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            S+ LNFLIFSVYLD+++GQI A+FIL +AACESS+GLAIILVYYRVRGSI +DQASLLK
Sbjct:   41 SISLNFLIFSVYLDDMIGQIFALFILTIAACESSIGLAIILVYYRVRGSIRIDQASLLK 99
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: A0A4Y5T7L0_9PHAE (NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A4Y5T7L0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.050e-20
Identity = 42/60 (70.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLKY 180
            S+ LNFL+FSV+LD+I+GQ+  I +++VAACESSVGLA+ILVYYRVRGSIL+D+ASLL++
Sbjct:   46 SISLNFLLFSVFLDDIIGQLFGILVISVAACESSVGLALILVYYRVRGSILLDKASLLRF 105
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: Q94Z11_PYLLI (NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z11_PYLLI)

HSP 1 Score: 84.3 bits (207), Expect = 7.280e-20
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            SV LNF+IFSV LD++ GQI AIFIL +AACESS+GLAIILV++RVRGSI +DQASLLK
Sbjct:   41 SVSLNFIIFSVCLDDLTGQIFAIFILVIAACESSIGLAIILVFFRVRGSIRLDQASLLK 99
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: A0A1L2F1H7_9PHAE (Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1H7_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.480e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            SV LNF+IFSV L +++GQI AIFIL VAACESS+GLAIILVY+RVRGSI +DQASLLK
Sbjct:   42 SVSLNFIIFSVCLADLIGQIFAIFILIVAACESSIGLAIILVYFRVRGSIRIDQASLLK 100
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: E6ZER2_ECTSI (NADH-ubiquinone oxidoreductase, subunit 4L n=85 Tax=Phaeophyceae TaxID=2870 RepID=E6ZER2_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.960e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            SV LNF+IFS  L ++ GQI AIFIL +AACESSVGLAIILVY+RVRGSI +DQASLLK
Sbjct:   41 SVSLNFIIFSACLGDLTGQIFAIFILVIAACESSVGLAIILVYFRVRGSIRIDQASLLK 99
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BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: A0A8E8PEE6_9PHAE (Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8PEE6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.970e-17
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:    4 VRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            V L FLIFSV L ++ GQI AI+IL +AACESS+GLAIILVY+RV+GSI +DQASLLK
Sbjct:   42 VSLGFLIFSVCLGDLQGQIFAIYILVIAACESSIGLAIILVYFRVKGSIRLDQASLLK 99
[Close]
BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: A0A7S6ZPE7_9STRA (Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.980e-17
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            ++ LNFLI SVYLD+I+GQ+  +FIL VA CESS+GLAIIL YYRVRG I +++ASL+K
Sbjct:   41 ALGLNFLILSVYLDDILGQVFCLFILTVAGCESSIGLAIILAYYRVRGRIRMNEASLMK 99
[Close]
BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Match: A0A1E1GHN9_9EUKA (NADH dehydrogenase subunit 4L n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A1E1GHN9_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 4.190e-17
Identity = 37/59 (62.71%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSILVDQASLLK 177
            +V LNF+IFS+YLD+I+GQI ++F+L VAA ES++GLAI++VYYRVRG+I VD  +L+K
Sbjct:   43 AVNLNFIIFSIYLDDILGQIFSLFVLTVAAAESAIGLAILVVYYRVRGTIAVDYINLMK 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11324.853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FEY2_9PHAE9.790e-2589.83NADH dehydrogenase subunit 4L n=1 Tax=Protohalopte... [more]
A0A4Y5T8D2_9PHAE1.620e-2384.75NADH dehydrogenase subunit 4L n=1 Tax=Dictyopteris... [more]
Q2TUC4_DICDH9.340e-2379.66NADH dehydrogenase subunit 4L n=1 Tax=Dictyota dic... [more]
A0A4Y5T7L0_9PHAE2.050e-2070.00NADH dehydrogenase subunit 4L n=1 Tax=Ishige okamu... [more]
Q94Z11_PYLLI7.280e-2076.27NADH dehydrogenase subunit 4L n=1 Tax=Pylaiella li... [more]
A0A1L2F1H7_9PHAE7.480e-2077.97Nad4L n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
E6ZER2_ECTSI2.960e-1976.27NADH-ubiquinone oxidoreductase, subunit 4L n=85 Ta... [more]
A0A8E8PEE6_9PHAE1.970e-1772.41Nad4L n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID... [more]
A0A7S6ZPE7_9STRA3.980e-1766.10Nad4L n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]
A0A1E1GHN9_9EUKA4.190e-1762.71NADH dehydrogenase subunit 4L n=1 Tax=Palpitomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11324contigH-paniculata_contig11324:7746..7928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue9.1e-10
Seed eggNOG ortholog70448.Q0P3E8
Preferred nameND4L
KEGG rclassRC00061
KEGG koko:K03882,ko:K05576,ko:K05578
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142,M00145
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003954,GO:0003959,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008137,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0034641,GO:0042180,GO:0042181,GO:0042651,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0051186,GO:0051188,GO:0055035,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1990204
EggNOG free text desc.ATP synthesis coupled electron transport
EggNOG OGsKOG4669@1,KOG4669@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928840.7827106-CDS-H-paniculata_contig11324:7745..79281622928840.7827106-CDS-H-paniculata_contig11324:7745..7928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11324 7746..7928 +
1691480640.5046377-CDS-H-paniculata_contig11324:7745..79281691480640.5046377-CDS-H-paniculata_contig11324:7745..7928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11324 7746..7928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11324.853.1prot_H-paniculata_contig11324.853.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11324 7746..7928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11324.853.1

>prot_H-paniculata_contig11324.853.1 ID=prot_H-paniculata_contig11324.853.1|Name=mRNA_H-paniculata_contig11324.853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
SVRLNFLIFSVYLDNIMGQISAIFILAVAACESSVGLAIILVYYRVRGSI
LVDQASLLKY*
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mRNA from alignment at H-paniculata_contig11324:7746..7928+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11324.853.1 ID=mRNA_H-paniculata_contig11324.853.1|Name=mRNA_H-paniculata_contig11324.853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig11324:7746..7928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGTACGTTTAAATTTTCTTATTTTTTCTGTTTATCTTGATAATATTAT
GGGTCAAATTTCTGCTATTTTTATTCTTGCCGTTGCGGCTTGTGAATCTT
CGGTTGGTTTGGCTATTATTCTTGTTTATTATAGGGTTAGGGGTAGTATC
CTTGTTGACCAGGCTTCATTATTAAAATATTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11324:7746..7928+

>mRNA_H-paniculata_contig11324.853.1 ID=mRNA_H-paniculata_contig11324.853.1|Name=mRNA_H-paniculata_contig11324.853.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig11324:7746..7928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGTACGTTTAAATTTTCTTATTTTTTCTGTTTATCTTGATAATATTAT
GGGTCAAATTTCTGCTATTTTTATTCTTGCCGTTGCGGCTTGTGAATCTT
CGGTTGGTTTGGCTATTATTCTTGTTTATTATAGGGTTAGGGGTAGTATC
CTTGTTGACCAGGCTTCATTATTAAAATATTAGTCTGTACGTTTAAATTT
TCTTATTTTTTCTGTTTATCTTGATAATATTATGGGTCAAATTTCTGCTA
TTTTTATTCTTGCCGTTGCGGCTTGTGAATCTTCGGTTGGTTTGGCTATT
ATTCTTGTTTATTATAGGGTTAGGGGTAGTATCCTTGTTGACCAGGCTTC
ATTATTAAAATATTAG
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