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Homology
BLAST of mRNA_H-paniculata_contig11320.851.1 vs. uniprot
Match: D7FYK0_ECTSI (SPX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK0_ECTSI) HSP 1 Score: 179 bits (453), Expect = 3.500e-44 Identity = 155/419 (36.99%), Postives = 174/419 (41.53%), Query Frame = 3
Query: 699 FSKVLKKLDKWTGGERGRVYFTDMMQNHPWISGCRAQGVLRMASAMTEHLRSLHAALTPRYTGGGGQPSSWVGRIVYSVGSFDKPKLYPGGVPSSSVPAAACQPSADNTQLSYSYRPALINGAATSADSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEATAEGSRLRFLREFGAIVIVGVYSDAAHAACHGGVL-------------------------PVEALRDRIARVSPHADRVVAVDSWNSAHVRKILLDASAGVTADIATLSTAVGPRSGETAAAVAETGAGPKLGAFSEGTGGINGSVNNLHAGACWAGTVKRNGTAGHCPRRANDAEVPXXXXXXXISSPNCCFVTCDWDGGGARRTEEGRRVRRDTLAAMGQCMPVFPLPSPTWGSGSDDYVGNEE 1880
F K+LKKLDKWTGG GR YFT ++Q H WI+G RA GVLRMASAM++HLRSL AL GG W R VYSVG+FD+P+L P +PSA L N XXXXXXXXXXXXX EA S LRFLREFGA+V+VGVY+DAAHAA P E+L R+ARV PHADRVV VDS + A VR+IL A+AG D R G A + NCCFV DW G T GRR RRD A M MPVF LPSPTW D G EE
Sbjct: 178 FRKLLKKLDKWTGGVSGREYFTSLIQTHSWINGDRAHGVLRMASAMSDHLRSLRPALALGPAAGG---PCWADRTVYSVGTFDRPRLPPA------------EPSA------------LPNTTPXXXXXXXXXXXXXXXXXXXXESLAFGYFGSGRPPSPPPTSAVTSATKEAVEGPSPLRFLREFGAVVVVGVYTDAAHAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRPFESLEARVARVRPHADRVVVVDSADPARVREILFGAAAGAVGDT-------------------------------------------------------RGGGA---------------------PTNNCCFVVSDWGARGPGGTGAGRRARRDVRALMEASMPVFRLPSPTWECAVTDSDGEEE 493
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 3518 |
| Cds size | 1254 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11320.851.1 >prot_H-paniculata_contig11320.851.1 ID=prot_H-paniculata_contig11320.851.1|Name=mRNA_H-paniculata_contig11320.851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=418bp
MKATAQRYGRHKPSLFSKVLKKLDKWTGGERGRVYFTDMMQNHPWISGCR
AQGVLRMASAMTEHLRSLHAALTPRYTGGGGQPSSWVGRIVYSVGSFDKP
KLYPGGVPSSSVPAAACQPSADNTQLSYSYRPALINGAATSADSSFADAS
RGDRSDGNGSGGVNAVSPSSTHSAGQETAVAEAVATEATAEGSRLRFLRE
FGAIVIVGVYSDAAHAACHGGVLPVEALRDRIARVSPHADRVVAVDSWNS
AHVRKILLDASAGVTADIATLSTAVGPRSGETAAAVAETGAGPKLGAFSE
GTGGINGSVNNLHAGACWAGTVKRNGTAGHCPRRANDAEVPPPPPESSIS
SPNCCFVTCDWDGGGARRTEEGRRVRRDTLAAMGQCMPVFPLPSPTWGSG
SDDYVGNEEEHVDVRVW* back to topmRNA from alignment at H-paniculata_contig11320:1011..5761- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11320.851.1 ID=mRNA_H-paniculata_contig11320.851.1|Name=mRNA_H-paniculata_contig11320.851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4751bp|location=Sequence derived from alignment at H-paniculata_contig11320:1011..5761- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCTCGAAGTTTAATGTGCTCAGAGTCGAGATATGCATAAGGGACAAAG
AGCGCTTCTTGAGTGGCGCAACATTTGTGGGAGTTGAACACCTAGCGAAG
CGTTCGATGTACCACCTCTCGAAGTCGATGTAAACGCTGAAATCCAGCTC
GAGAAGCTACAATTTGCTGCAGTTGCTCTTCGGAGATGCTGATGTTCGAG
ATTAAATGCTACTCTAATTCGTGTACCATCGCCAGCGCACAGGTTCGCAC
CACCTCTCGTCAGAGCCTTTGCACCGCTTCCTCTGTGTGACTTCGGTATC
AGCAACATTTTCGACTTCTCCGACGGTGGCCCTTTCCGTGGCCGGCAATT
TCATCTGCCGTCGAGAAGACCTCTCCCCAACTCATTACGATCACATGCGA
CATCGGGCGCGGCGAATTTTAATTCGGCAGGCTCTGGTACAGGGGCAGAA
CACTCATCGTCCACACGTCTGAGCCACTTCCGTTGGGTAATCCTGTGACC
CTTGGTCGGCGCCAGGCCCGGTATATACTCCTTCACGACGCTTTTTCGCC
GTAAGTGAAGCGCGGAGGCCTGCATCTCCGGGTGGGGATCAGCCCTTTCG
TACCTACGACAACGCTCACCCATGTTCATTGTGTTATATTGCTAGCGGCA
ATCATGAAAGCGACAGCACAGCGTTACGGGCGGCACAAACCGTCACTCTT
TAGGTGCGAGTTGGAGCCCTATTGTTTGCACGATTGCTGTCTTGCGAGGG
TTTGTTTTATAATATTAGGAGCTGCACGGTACTAACCCCTACTGAACAGT
AAAAGCACGAAGTTTCACCTGTCCGCTAGTACAGGAGCAGTGTTCGCGAT
GTGTTCCAACATGGACGCGGTTACCTCACCATGGTTGTAGTTTTGGTTAA
ATTAATCATGAACATTTTCGACCGACGGTGGTAGGCAAGTATTCTCCCAG
GACTGCAGACGAACTCAGAGCAAGGTAGGGTCTCATCGCTCTAGTCAAGA
TCCTATATAGTCGGCCGGACAGGAACATGAATCGGTCCGTGAAATCTGAT
GTTGAAAAAAGAGGGACTTTCCGTGCTTGGTGTGTTCGCAAGATGAACGC
GGTCTATGTTATGAGCTGAAAGAGTCACACAGTTTCACATGACAGGATCA
CCGATAGAGGGCTGTACCTGCACCACCCAAGATAGAAAAGAGGTTTTTGA
GAGCTGGGGGTTCGCAAAATCAAGTGTATTGTTGTGCATGGTCGGTGAAG
AACATTCTTCTGTTGGACTAGGATCATGTTGTAATAGATCAAGACGTGGA
ATCACCCACCGTTATCATCCAACCGGTGCAACTGAGAGCTATGTCCAACG
AATGACCCACACCACGCTGACATCCACACCTCCTACAAACAGTACAAGTC
GAGGGTGTAGCCTCAAGTTCGGAGCAATCCTTTCCCATTACCGATCCCTC
TTGACTGTAGTTCCTCTTGCTTACTGTCTTTTTGTAACAGCAAGGTTTTG
AAGAAGCTCGACAAGTGGACCGGTGGCGAGCGTGGCCGAGTGTATTTCAC
AGACATGATGCAGAATCACCCTTGGATCAGTGGCTGCCGTGCCCAAGGGG
TAAGATGACGATCACCCCTAACCGATGCTCGTAAAAATACACACGTTCGA
CTGTTATCACGGGTAGTTAGGCCATGGGTTTCGTGGGAGGACACACCGAC
CATGTAAGTAGCGCCGTCTTGAGATGCCACCGTCGCCGTCACCGTCACCG
TCGCCGCTATTATCAGTATCACCATTCCTCGCCACGAAAAGTATTACAAG
ATCATCACTGTGCGCTACTGTTCGATGCAGATTCCACATACCATATTGAT
CTGTAGGGCTATTTGGCTGTCGCCGTGTCGGTTTGTTGCGTGCATTATCC
GTGCGTTGTAACAACAGTTATGCACGCATTGGGCGTGCAGTTTGTCGCTG
ACGAGCAAAGGCAAAGCTATACAACAACACCCAATCTTTTTTAACGCCTC
CCACCTTGATACATCACCTTGTTTGCCCGACCGCAATACCTGAAGGTGTT
GCGCATGGCTTCGGCGATGACAGAACATCTCAGGAGCTTACATGCGGCAT
TGACTCCAAGGTATACGGGAGGAGGCGGACAACCCAGCTCCTGGGTGGGC
CGCATCGTCTACAGCGTGGGGAGTTTTGACAAGCCAAAACTTTACCCGGG
AGGAGTACCATCATCTTCCGTGCCAGCAGCGGCGTGCCAGCCCTCCGCCG
ACAATACCCAACTCTCTTACTCCTACCGTCCAGCCCTCATAAACGGTGCT
GCTACATCGGCCGACAGCAGCTTCGCGGACGCTTCTCGCGGCGATAGGAG
CGATGGTAATGGTAGTGGCGGCGTAAACGCCGTATCGCCGTCGTCGACAC
ACAGCGCAGGCCAAGAGACCGCGGTCGCCGAGGCAGTAGCCACCGAAGCG
ACGGCCGAAGGGTCGAGGTTGCGGTTTCTGCGAGAGTTCGGGGCGATCGT
AATAGTTGGCGTGTACAGCGATGCGGCTCACGCCGCTTGTCATGGAGGCG
TGCTTCCGGTGGAGGCGCTCCGGGACCGCATCGCGCGTGTTAGTCCTCAC
GCCGACCGCGTCGTCGCTGTGGATTCTTGGAACTCGGCTCACGTGCGGAA
GATTTTACTTGACGCTTCAGCGGGTGTGACGGCTGATATCGCTACACTTT
CGACGGCAGTGGGGCCGAGGAGTGGGGAAACGGCAGCGGCGGTGGCCGAG
ACAGGCGCAGGGCCAAAGCTTGGAGCATTTTCCGAGGGTACTGGTGGCAT
CAATGGCAGTGTGAATAACTTGCACGCTGGTGCTTGCTGGGCAGGAACTG
TAAAACGGAACGGCACTGCAGGTCACTGCCCTCGGCGAGCCAACGATGCT
GAGGTACCACCGCCGCCACCGGAGTCATCTATTTCGAGTCCGAATTGCTG
CTTTGTAACTTGCGATTGGGATGGAGGAGGAGCGAGGCGGACAGAGGAGG
GACGTCGCGTCCGTCGCGATACACTAGCCGCCATGGGACAGTGCATGCCC
GTGTTCCCATTGCCCAGTCCTACTTGGGGATCGGGGTCGGATGATTACGT
CGGGAATGAGGAAGAGCATGTTGATGTGCGAGTTTGGTAAAATAGAGCAG
TCTCTAGGAAGAATTGCGCTTGTTGACCAACGGAGCGCAAACAAGGCCTC
TATCAACACGAATGACTTTGAGGAAGAGAAGGGAAATTGCTAGGAGGGTA
CAGGTAAATATAGATCAGTGGTTGGGTTTTTCAGAATGGGTCACAGATAT
AGATGATATATGGTCAATTTTGAGTGTATCCATATATTGTCAGAGGGGGG
TGTGTGTAGCGTGACTCGATGACCCAGAGAGTGTCAAATTCTTCGTTTTT
TTTGTATATGCGCGGGGAGGGTAAAGCATCACAAATCAATGGAATTCGCT
GTCCGGGGCCCTTCCGGTCGAGAAGTCGTGGTTTCAAGTTATCGCTTAGC
CTGGACGAAGCCAATTGCGGGAACACAGAAGAATACAAAATCAGATCTCA
GAGGAGAATTCCAGCTGTCGTTGGTTTTCAGGGTTTAGTTCTTCATAACT
TGGAAAGACGAGACATCTTAATCTGTATCTGTTTTTTTTTGTTTAGTTGT
GTGGGTCGAAAGTTACTCAATACAGTAGAACAGAACACTTTCGAAGTATT
TACATCGTCTTTTTTTCTGTTACTGGCAGGGGAGGTGATGAGGATGTCGC
GAACGATCGGTGCCTCCGCCCTCCCCCCCCCCTGTCTTGTAGACCCTTAT
TGTTGTATTTCATAGTACGACACATTTGGTATACGCTGTAGGGCACGCTA
TTTTTTATAGTGCCGTGAATTCATGGATGAATGGCATGACACATTTGGCA
TGCGCTGTAGGCCAAAGTATACTTCTAGCTATGCTGGTCGTTTTTGCAGA
TGTTGTGTCGAGACATCTGACGTCAGGATTGGTATAGATATTCCTGCCCT
TCCTTCTCGAGGTCAGGTATATATTTCCCCACTCCATCTTTGTTCAAGGG
TCGCTTGTTTGTACGTGCGGGTGAATTCATTTCGTTGGGTGTAAAGTACG
TACATTACCACGCATACACCGTTGTTGATGTTGTTTCCAAATCTTTCTTG
CCTATGACCTGGTGACGGTGTTGAACCGTCATCTCAATCTCGGCTGTCTG
TTGGTTAACATGAGGTTTTGGCGTACGGGATAGACCCCCGGTGTAGTTGT
TGAACGAAGACTTCGAGATGGACGTCAGCGAGCATGGTAGTGCATATCGA
TGTGGGTCTATTTTGTTGTATGCGATACTGATTATGGTTTCAGCAGGTAA
CAGTGTAGTTTTCAAAATGAGGTTGGCTGTCGATTGATAATGTTGGGGAT
AACGATTTATTTTCAGGGACTTTGACCCGGGAATAAAGTTATTTCATGTG
TATCGGTTGTCGTACGGATCGATTCGTGTGTGACGATTCAACGGAACTGG
ACCAAAATTTTGCCGAGCAGCGAGTTCGTACGAAAATTTCTGACACTGCA
CATGTGGACTCTGGGGTACGTTACATCACGTTGTCAAAGTCACCGGTTTT
TCTTTGTCAACGTCACCGAACAGACAATCCTGAAAGATGAGGTTCATCTT
TTTGGTGAGGTTGAAACGATTTTTCGTAACTTCCACCATCAACCGTTGTC
GAATCATGCTAAACGGCCCAAGACTTCGTGAAAGGGTATGGGGTCAACGT
T back to topCoding sequence (CDS) from alignment at H-paniculata_contig11320:1011..5761- >mRNA_H-paniculata_contig11320.851.1 ID=mRNA_H-paniculata_contig11320.851.1|Name=mRNA_H-paniculata_contig11320.851.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2508bp|location=Sequence derived from alignment at H-paniculata_contig11320:1011..5761- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGCGACAGCACAGCGTTACGGGCGGCACAAACCGTCACTCTTTAG
ATGAAAGCGACAGCACAGCGTTACGGGCGGCACAAACCGTCACTCTTTAG
CAAGGTTTTGAAGAAGCTCGACAAGTGGACCGGTGGCGAGCGTGGCCGAG
TGTATTTCACAGACATGATGCAGAATCACCCTTGGATCAGTGGCTGCCGT
GCCCAAGGGCAAGGTTTTGAAGAAGCTCGACAAGTGGACCGGTGGCGAGC
GTGGCCGAGTGTATTTCACAGACATGATGCAGAATCACCCTTGGATCAGT
GGCTGCCGTGCCCAAGGGGTGTTGCGCATGGCTTCGGCGATGACAGAACA
TCTCAGGAGCTTACATGCGGCATTGACTCCAAGGTATACGGGAGGAGGCG
GACAACCCAGCTCCTGGGTGGGCCGCATCGTCTACAGCGTGGGGAGTTTT
GACAAGCCAAAACTTTACCCGGGAGGAGTACCATCATCTTCCGTGCCAGC
AGCGGCGTGCCAGCCCTCCGCCGACAATACCCAACTCTCTTACTCCTACC
GTCCAGCCCTCATAAACGGTGCTGCTACATCGGCCGACAGCAGCTTCGCG
GACGCTTCTCGCGGCGATAGGAGCGATGGTAATGGTAGTGGCGGCGTAAA
CGCCGTATCGCCGTCGTCGACACACAGCGCAGGCCAAGAGACCGCGGTCG
CCGAGGCAGTAGCCACCGAAGCGACGGCCGAAGGGTCGAGGTTGCGGTTT
CTGCGAGAGTTCGGGGCGATCGTAATAGTTGGCGTGTACAGCGATGCGGC
TCACGCCGCTTGTCATGGAGGCGTGCTTCCGGTGGAGGCGCTCCGGGACC
GCATCGCGCGTGTTAGTCCTCACGCCGACCGCGTCGTCGCTGTGGATTCT
TGGAACTCGGCTCACGTGCGGAAGATTTTACTTGACGCTTCAGCGGGTGT
GACGGCTGATATCGCTACACTTTCGACGGCAGTGGGGCCGAGGAGTGGGG
AAACGGCAGCGGCGGTGGCCGAGACAGGCGCAGGGCCAAAGCTTGGAGCA
TTTTCCGAGGGTACTGGTGGCATCAATGGCAGTGTGAATAACTTGCACGC
TGGTGCTTGCTGGGCAGGAACTGTAAAACGGAACGGCACTGCAGGTCACT
GCCCTCGGCGAGCCAACGATGCTGAGGTACCACCGCCGCCACCGGAGTCA
TCTATTTCGAGTCCGAATTGCTGCTTTGTAACTTGCGATTGGGATGGAGG
AGGAGCGAGGCGGACAGAGGAGGGACGTCGCGTCCGTCGCGATACACTAG
CCGCCATGGGACAGTGCATGCCCGTGTTCCCATTGCCCAGTCCTACTTGG
GGATCGGGGTCGGATGATTACGTCGGGAATGAGGAAGAGCATGTTGATGT
GCGAGTTTGGTAAGTGTTGCGCATGGCTTCGGCGATGACAGAACATCTCA
GGAGCTTACATGCGGCATTGACTCCAAGGTATACGGGAGGAGGCGGACAA
CCCAGCTCCTGGGTGGGCCGCATCGTCTACAGCGTGGGGAGTTTTGACAA
GCCAAAACTTTACCCGGGAGGAGTACCATCATCTTCCGTGCCAGCAGCGG
CGTGCCAGCCCTCCGCCGACAATACCCAACTCTCTTACTCCTACCGTCCA
GCCCTCATAAACGGTGCTGCTACATCGGCCGACAGCAGCTTCGCGGACGC
TTCTCGCGGCGATAGGAGCGATGGTAATGGTAGTGGCGGCGTAAACGCCG
TATCGCCGTCGTCGACACACAGCGCAGGCCAAGAGACCGCGGTCGCCGAG
GCAGTAGCCACCGAAGCGACGGCCGAAGGGTCGAGGTTGCGGTTTCTGCG
AGAGTTCGGGGCGATCGTAATAGTTGGCGTGTACAGCGATGCGGCTCACG
CCGCTTGTCATGGAGGCGTGCTTCCGGTGGAGGCGCTCCGGGACCGCATC
GCGCGTGTTAGTCCTCACGCCGACCGCGTCGTCGCTGTGGATTCTTGGAA
CTCGGCTCACGTGCGGAAGATTTTACTTGACGCTTCAGCGGGTGTGACGG
CTGATATCGCTACACTTTCGACGGCAGTGGGGCCGAGGAGTGGGGAAACG
GCAGCGGCGGTGGCCGAGACAGGCGCAGGGCCAAAGCTTGGAGCATTTTC
CGAGGGTACTGGTGGCATCAATGGCAGTGTGAATAACTTGCACGCTGGTG
CTTGCTGGGCAGGAACTGTAAAACGGAACGGCACTGCAGGTCACTGCCCT
CGGCGAGCCAACGATGCTGAGGTACCACCGCCGCCACCGGAGTCATCTAT
TTCGAGTCCGAATTGCTGCTTTGTAACTTGCGATTGGGATGGAGGAGGAG
CGAGGCGGACAGAGGAGGGACGTCGCGTCCGTCGCGATACACTAGCCGCC
ATGGGACAGTGCATGCCCGTGTTCCCATTGCCCAGTCCTACTTGGGGATC
GGGGTCGGATGATTACGTCGGGAATGAGGAAGAGCATGTTGATGTGCGAG
TTTGGTAA back to top
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