mRNA_H-paniculata_contig11318.847.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11318.847.1
Unique NamemRNA_H-paniculata_contig11318.847.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11318.847.1 vs. uniprot
Match: D7FRM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM4_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 3.740e-64
Identity = 116/169 (68.64%), Postives = 138/169 (81.66%), Query Frame = 2 
Query:  509 SVGSG-EAEALLAARILLRERPGAEKLMSNQALELYLEAAQEVSDAADGYRVSLMALKCLNNAVWDQLAGQMSFVRLGGPTVVIRLLQDSRPASVLYFACRIFNLIGTSNSESFAELKRNHDLLRILSSILAWCVRCNDPPIPAGDDRLKLLVQVLQGLFLLGARYTPE 1012
            ++G G EAEALLAARILLRER GAE+LM  +ALE Y +AAQE  DAA G+RVSLMALKCLNNAVWDQ  GQ+SFV+LGG  +++ LLQ SRPASVLYFACRIFN++G+SN  +F ELK+  DLL +L S+LA CVRC  PP P G+DR+KL+VQ LQGLFLLG R+T E
Sbjct:   71 TLGPGVEAEALLAARILLREREGAERLMDQEALETYTKAAQEDGDAACGFRVSLMALKCLNNAVWDQPKGQISFVQLGGLDMLVGLLQASRPASVLYFACRIFNVVGSSNPTAFNELKKKQDLLLLLLSVLAGCVRCTHPPFPGGEDRVKLMVQALQGLFLLGVRFTQE 239
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BLAST of mRNA_H-paniculata_contig11318.847.1 vs. uniprot
Match: A0A835YV73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV73_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.940e-6
Identity = 55/211 (26.07%), Postives = 80/211 (37.91%), Query Frame = 2 
Query:  524 EAEALLAARILLRERPGAEKLMSNQALELYLEAAQEVSDAADGYRVSLMALKCLNNAVWDQLAGQMSFVRLGGPTVVIR----------------------LLQDSRPASVLY-----------------------------FACRIFNLIGTSNSESFAELKRN---------------------HDLLRILSSILAWCVRCNDPPIPAG 940
            +A AL AA++LLRE  G+  LM+ +A E+YL+AAQE  DA +G+ V+   + CL N +  + A     V       + R                      LL  +RPA +L+                              A R    +  + + + A ++                          L IL S+LAWCVRC DPP P G
Sbjct:   74 QAAALSAAKVLLREAQGSAPLMTMEASEVYLKAAQESRDADEGFAVATAGVSCLVNLLVHEAAAPKPVVAANMLVALPRASTAPRSXXXXXXXXXXXXXXXLLGGARPAPLLHNSXXXXXXXXXXXXXXXXXXXXXXXXXXXLAARALYRLCATRAPAAAVVREGCAXXXXXXXXXXXXXAGTGDCGKTLVILVSLLAWCVRCEDPPFPQG 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11318.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRM4_ECTSI3.740e-6468.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YV73_9STRA8.940e-626.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11318contigH-paniculata_contig11318:4205..8232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-12_002500.1
Exons4
Model size2137
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11318.847.1prot_H-paniculata_contig11318.847.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11318 4791..7143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.7929056-UTR-H-paniculata_contig11318:4204..47901622928839.7929056-UTR-H-paniculata_contig11318:4204..4790Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11318 4205..4790 +
1691480640.0596173-UTR-H-paniculata_contig11318:4204..47901691480640.0596173-UTR-H-paniculata_contig11318:4204..4790Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11318 4205..4790 +
1622928839.8958604-UTR-H-paniculata_contig11318:7143..82321622928839.8958604-UTR-H-paniculata_contig11318:7143..8232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11318 7144..8232 +
1691480640.11032-UTR-H-paniculata_contig11318:7143..82321691480640.11032-UTR-H-paniculata_contig11318:7143..8232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11318 7144..8232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.813042-CDS-H-paniculata_contig11318:4790..48021622928839.813042-CDS-H-paniculata_contig11318:4790..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 4791..4802 +
1691480640.0697618-CDS-H-paniculata_contig11318:4790..48021691480640.0697618-CDS-H-paniculata_contig11318:4790..4802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 4791..4802 +
1622928839.827308-CDS-H-paniculata_contig11318:5204..53751622928839.827308-CDS-H-paniculata_contig11318:5204..5375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 5205..5375 +
1691480640.0800571-CDS-H-paniculata_contig11318:5204..53751691480640.0800571-CDS-H-paniculata_contig11318:5204..5375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 5205..5375 +
1622928839.8632824-CDS-H-paniculata_contig11318:5989..61121622928839.8632824-CDS-H-paniculata_contig11318:5989..6112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 5990..6112 +
1691480640.0904024-CDS-H-paniculata_contig11318:5989..61121691480640.0904024-CDS-H-paniculata_contig11318:5989..6112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 5990..6112 +
1622928839.8804543-CDS-H-paniculata_contig11318:6987..71431622928839.8804543-CDS-H-paniculata_contig11318:6987..7143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 6988..7143 +
1691480640.1001563-CDS-H-paniculata_contig11318:6987..71431691480640.1001563-CDS-H-paniculata_contig11318:6987..7143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11318 6988..7143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11318.847.1

>prot_H-paniculata_contig11318.847.1 ID=prot_H-paniculata_contig11318.847.1|Name=mRNA_H-paniculata_contig11318.847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
MSNQALELYLEAAQEVSDAADGYRVSLMALKCLNNAVWDQLAGQMSFVRL
GGPTVVIRLLQDSRPASVLYFACRIFNLIGTSNSESFAELKRNHDLLRIL
SSILAWCVRCNDPPIPAGDDRLKLLVQVLQGLFLLGARYTPEVRCHDKGG
TRV*
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mRNA from alignment at H-paniculata_contig11318:4205..8232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11318.847.1 ID=mRNA_H-paniculata_contig11318.847.1|Name=mRNA_H-paniculata_contig11318.847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4028bp|location=Sequence derived from alignment at H-paniculata_contig11318:4205..8232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAATCTATTGTGCAATAAGTTTGCAGGTGCACTGACTGTACCGTCGGG
GCTCCTGCGCTCCGGTCCCAAACAAGGAACCTACCGGCGAATGTCAAATG
AGAACACGATGCTCCCGGGAGAGACGGGCTCTCGAGGGGACATCGCCTGC
TCTATACGGGTCGGTTCTAGGACTTGAGATGTAGTCCGGAGCAAGCGCTT
GGGTTCTGTTCTGTCGTAGATGGAGTGACCGTCCAGGGTCGGACACAGCT
AGAAAGCTGTTCCGAGAAAGGGACAAAACACCGTTGGTCGTTGTGTACGG
GGTCGGGGTTCAGGAATCCCAGGAACGTCAGGAACATATTCTCCACACAA
CTCTATCTTAATTTTTAACAGTTTTTGCCATGAACATTCTTAATTTTTAA
TGTCCGTTCTTTGATCCCATTTGTCGACATGGACACCGTACCGTGCATTA
TAATTTTTTCCGAACCCTCAACTCTGAACTCCCACCGAATCCATCGGCTT
GGGTGCTCTCGGTGGGTTCAGGGGAGGCTGAAGCTTTGTTGGCGGCAAGG
ATACTGCTTCGTGAGAGACCGGGAGCAGAGAAACTCATGAGCAACCAGGT
TAGCGACAAAGAAAAACAAAAAAAGTGCTATCCAGCCGGCTTCCTGATGA
TGCAGTCGTTCCTTTGCTTGCGATGGCTATGCTACTCAGACATGGCCTTG
CTTCACACATTTTAATGTGGCAATATCGTCTTGTTGTCCTCCTGGGGTCG
TTACTCGTGCAATTGACTACACATTTGCATTGTTTGGGCGATCTGCAGGA
ATTCGCAAGCCCCAAAGAAGAGCAAACATGAACATTCGTATCTATTATTA
TGGTAATGTGATTGTTATTCGAAGTGAAATGGCATCCCTGGAAGGTCATT
TGGCGAGATGATGTATGGCACCGAATAGAACGCAGGCTAAAATAAAACAT
TGAAATACGCATGGCGATTTGTCCGTCTGTGTTGCGGGGTCGTCCCGCAG
GCGCTGGAACTGTACCTGGAAGCGGCGCAGGAGGTTAGTGATGCGGCGGA
CGGATACCGTGTGAGCCTAATGGCACTAAAATGCCTGAACAACGCGGTGT
GGGACCAACTGGCTGGGCAGATGTCCTTTGTTCGCCTAGGAGGGCCGACG
GTGGTGATCAGATTGTTGCAGGTGAGCTTGTCGTGTGAATACTTGTTTGT
ATTGAAGGGTTTTTTGCAACGACGTCAGATGGATCTATTTGCAAATATGG
TCGTGTGTGACCGAAGGTCTGTGAGACTCCTTTCATGTGTATGTTAAACA
GCACTTTGCCCACTTGCTGACAACGACGTGTCGGAGGAACGCGTAGATTG
GGTGCTTTCAATAGGGAAGCGGCTAGACTTTCTGAGCAGGCCGGCTGCAT
ATTAGTGGCGGGCACATGTCCTAGAAGTCCATTTTTGTATTTATGGCCAA
CCTTGAAATATTCTTTACCCACCTGTGGTGTCCATGTATTGGCTGGTTGC
TGATGCACAGTTTGGTTGCATGAGTTAAGCGGGTTCTCCCGGTTGCTCCC
GGATGCTCCCTAAGCGAGGCTATATGGTACAACTTTTTGCCAATTTTCCA
CTATCGCCTGACCACGTTTCAGTACTCCAAGTGCTCGTTTGACGTGTGGC
GTAATTCGTCATGCTATTTGGTGGCGAGCCCATGTTCACATATAAGATGC
CCCTTCTATCAAAATTATTTTTTGCTGTGTTGACAATGCGACGATGGCGT
TCGATCTTTGTCCCGATGTTCTTTACCTTCGCCAGGACTCTCGACCTGCT
TCGGTGCTCTACTTTGCGTGTCGTATTTTTAATCTGATCGGAACGTCCAA
CTCGGAATCGTTCGCCGAGCTAAAGCGGAATCACGACCTGCTGCGAATAT
TGTCATCGGTGAGTATGCAATCCTCAATCCTTGTCAGACGAGCACCGTAG
GCCTAGAATGCAGCTTACCATTAGTAGTGGCTGAACATTGTCTAATTTTT
TTATTTTCCATCCTGGTTATTTTATTCTTAATTTCAATATTTTTTATGCC
CTTCGGGGAGCCGATAGCGCGTTTTGTGGGCACAATTTGTGTAGAGTTGG
AGTAGTGTCGAGCACTGTCATGTTCGCTGAATCCGTGTCCGTATATGACG
ATATTGTAACTGTGGATGCGCGGAGCATGATGGGCCGAACTGAGTTGAGA
TCTTGTTCACACAAACTTTATGCTCCTCCGTTCAATGTCTCATCTCTATT
GTAGTTTACAAGCAACATTACCCCTGGTGATAACATTTTCGAGCTCGATT
TTCTTTACGTAGCAATACGACACCATGGTGCCATTCTCAAACGTTGTATC
ATTGGAACTATATTTCTCGTCGGGATGTGTTATCACATCGATGTGTGATG
CTCTCCCGATAGCGCTCCTCTAGCTTGTCAGAAAAAATCCAGTAAAGGAA
AAAGGAAACACCCTTGGTGGTATACCCTGTGGCTACGGTACTGCCGATGT
TTTCTCAACATTGATGATCGCTTTTTCCCGGCCTAAATGGGACTGTTGAG
GGTCTGGTGTTGCTCTTCACATGTTTCGGCTATTTACGTAGGACGCGAGT
GCCCTTTGCATTCGTCAGCCTCTCACCAGTAAGCAGAACGCTGGGCTTGA
AAATAGGCATTGTACAAGTGTGTTGCCAAATAGGGTTCTTCGAGGAATCT
GAGGGTCAGAGATTTTCCTATAACCGACGTCTGAGGCTTCCAAGGAAATT
CAAATCGCCAAATGTTTCCGTGGAACTTTGCAGATCCTCGCGTGGTGCGT
TCGGTGCAATGACCCGCCTATTCCCGCTGGCGACGACCGATTGAAGCTTT
TAGTGCAAGTGTTGCAAGGACTTTTCCTCCTGGGTGCGCGATATACTCCT
GAGGTGAGGTGTCACGATAAGGGCGGAACAAGGGTGTGATCGGAATCTAT
GCCGTAGCAAGGGGTTACGCGGAAGGCAGGACTCGAACCACACCACAAGA
TGCGCGATACAGGCATTTGGGAAACGGGGGGGGTTATAATATGTTATTAT
CCAGCACTTCGCGGGATATAAGTTTTTATTCAGTGTTGAAAAGCGCAGTT
TTGGCGACGACCAGATCGTCGAAGATGGCGGGAGAATCGTGTCGGAAGAG
AGTGGCAGTATTGCAGCGTCGGCGAGAGAGTATAGCAGTAGCATACCTAG
AGGACACAGTCACTCGCATCGAGGATCGAGGAGCTAGTGGTCAAAGCAAA
CCCTGCCAACGTTTAGTGGACATCACGCTAGTGGACGGCGCGTGCGACTT
TCCTTGTTGGTGTAGAATGAAGCTTGGAGATCTTGGCGTCATCACAGGGG
CTATATGAACGACGACAGATTATAAGTGCAGCCGAACGCGCCGTGCTGGA
TACCTCCCTGCTATCCGGTTTATTTTTATTATTTGAAATAACTGGCAGAT
GAGTATCCATGCGTGCTTGTCCAGACTGTAGTTTTGATTCCTCTTTTTGA
TCTAGGAGTCTGCGCTGTCAAACGATGAATTCCGTGAAGCACATCTGTCG
GTCGGACTCTATGCGAGACGAACACATCAGATCGGACAAAGTAGTGCTGT
CGTTCGCGGACCCCAGGCCAAATTACTAAGGTAATCCGCGTTCTGGGCAA
TCTGAGAGACATGTATTCGGGTTGGTGGGTATGAGCCTGCTCGCCTGACC
TTAGGTGGGCTGATATCAATCTACGGTGTGCGACCCGTCGGAGAGCAGGG
AAAACGAAGATCCGATGAACTGCACACTGGTCAATCTCGAACTGCTCCTG
CAAAAAACCTCCTGGCGAGATCCGGGGGGGGAAGAATTAGTTAAGGTTTT
CCCTTGGTCTGCTGGGGACAAGAAAACAGAGTAGTGCCGTAGCTTTGATT
GGATACTCTGCGCTGTTGCATGTGCTATATATATGCAATAGCACTTGCAT
TGCGTACAAAAAGACCTGCAGGTCACCCACACGGCCCAGCAGAAACTACA
CGCAGAGAAGTGCGAAAAGGGGGCGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11318:4205..8232+

>mRNA_H-paniculata_contig11318.847.1 ID=mRNA_H-paniculata_contig11318.847.1|Name=mRNA_H-paniculata_contig11318.847.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig11318:4205..8232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAACCAGATGAGCAACCAGGCGCTGGAACTGTACCTGGAAGCGGC
GCAGGAGGTTAGTGATGCGGCGGACGGATACCGTGTGAGCCTAATGGCAC
TAAAATGCCTGAACAACGCGGTGTGGGACCAACTGGCTGGGCAGATGTCC
TTTGTTCGCCTAGGAGGGCCGACGGTGGTGATCAGATTGTTGCAGGCGCT
GGAACTGTACCTGGAAGCGGCGCAGGAGGTTAGTGATGCGGCGGACGGAT
ACCGTGTGAGCCTAATGGCACTAAAATGCCTGAACAACGCGGTGTGGGAC
CAACTGGCTGGGCAGATGTCCTTTGTTCGCCTAGGAGGGCCGACGGTGGT
GATCAGATTGTTGCAGGACTCTCGACCTGCTTCGGTGCTCTACTTTGCGT
GTCGTATTTTTAATCTGATCGGAACGTCCAACTCGGAATCGTTCGCCGAG
CTAAAGCGGAATCACGACCTGCTGCGAATATTGTCATCGGACTCTCGACC
TGCTTCGGTGCTCTACTTTGCGTGTCGTATTTTTAATCTGATCGGAACGT
CCAACTCGGAATCGTTCGCCGAGCTAAAGCGGAATCACGACCTGCTGCGA
ATATTGTCATCGATCCTCGCGTGGTGCGTTCGGTGCAATGACCCGCCTAT
TCCCGCTGGCGACGACCGATTGAAGCTTTTAGTGCAAGTGTTGCAAGGAC
TTTTCCTCCTGGGTGCGCGATATACTCCTGAGGTGAGGTGTCACGATAAG
GGCGGAACAAGGGTGTGAATCCTCGCGTGGTGCGTTCGGTGCAATGACCC
GCCTATTCCCGCTGGCGACGACCGATTGAAGCTTTTAGTGCAAGTGTTGC
AAGGACTTTTCCTCCTGGGTGCGCGATATACTCCTGAGGTGAGGTGTCAC
GATAAGGGCGGAACAAGGGTGTGA
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