mRNA_H-paniculata_contig1131.844.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1131.844.1
Unique NamemRNA_H-paniculata_contig1131.844.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: D7FZ79_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ79_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.250e-31
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 3
Query:  117 ARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRGLDERGYENP 365
            A +++  +  +C     PTKVS + LEDGT+VR+AKR+GA+IPRPEIL VRR PRSNLTGPKDT KEDV E+TFRGLDE GYENP
Sbjct:   96 AAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENGYENP 180          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A835Z5A5_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A5_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.270e-15
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  108 SGPARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRGLDERGYE 359
            S P  +++ A+  +C     PT+ +R+ LEDGT+VR+A  +GAIIPRPE+L  RR  ++ + GPKDT  E    VTF+G+DE G E
Sbjct:   97 SRPQPVHVSAVALVCPETGRPTRAARRYLEDGTRVRVAALSGAIIPRPEVLLQRRRAKNLIVGPKDTEAEAAHAVTFKGVDELGNE 182          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7S2UWK4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWK4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.380e-15
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  162 PTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRGLDERGYE 359
            PT+V  + LEDG +VRI+K++GA+IP+PE L +R+ PR   TGP+DT  +DVL+VTFRG+   G E
Sbjct:  109 PTRVMWRYLEDGARVRISKKSGAVIPKPEGLGLRKKPRKTATGPRDTPPDDVLQVTFRGIGADGRE 174          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A8J2X1P5_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1P5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.270e-15
Identity = 37/79 (46.84%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  102 PTSGPARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTF 332
            PT  P  ++   +  +C   +LPT+V+R+ L+DGT+VR+A R+GAII +P IL  R  PRS   GP+DT ++ VLEVT+
Sbjct:   93 PTKAPRSIHYSNVNLVCPVTNLPTRVARRFLDDGTRVRVAVRSGAIIEKPAILTERHKPRSTQAGPRDTPEDHVLEVTY 171          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: F0XVF8_AURAN (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF8_AURAN)

HSP 1 Score: 75.5 bits (184), Expect = 7.380e-15
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  105 TSGPARLYLPALRCIC--CSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRS-NLTGPKDTAKEDVLEVTF 332
            T+ P  ++   +  +C   SLPT+V+R+ L+DGT+VR+A R+GAII  PE+LK R  PR+  + GPKDT + DVL VT+
Sbjct:   58 TAAPCSVHYSNVNLVCPVTSLPTRVARRFLDDGTRVRVAVRSGAIIELPEVLKERHTPRTPGVPGPKDTDEADVLAVTY 136          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A2D4BXV7_PYTIN (50S ribosomal protein L24, chloroplastic n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXV7_PYTIN)

HSP 1 Score: 72.0 bits (175), Expect = 2.900e-13
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  162 PTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFR 335
            PT+V+ +  +DG KVR++K+TG IIP+PEILK R  PR   TGP DTA EDVLE T +
Sbjct:  102 PTRVAIRFTDDGDKVRVSKKTGTIIPKPEILKERHTPRRTETGPFDTAPEDVLESTVQ 159          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7S3V6A7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6A7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.350e-13
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  159 LPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVL-EVTFRGLDE 347
            LPT+VSR+ LEDG+KVR+AK++GAIIPRPEILK RR P+S  +   DT+  D++ E T+  + E
Sbjct:  114 LPTRVSRKTLEDGSKVRVAKKSGAIIPRPEILKERRRPKSIASTVSDTSDADLVWETTYSSIPE 177          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7S0XR06_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XR06_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.070e-12
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 3
Query:  138 LRCICCSLPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTF 332
            L C   +LPT+V R  LEDGT+VRIA R+G  IP P+    R+ PRS L G KDT +EDVLEVT+
Sbjct:  111 LVCPITNLPTRVRRGFLEDGTRVRIAVRSGGFIPYPKFE--RKKPRSTLVGDKDTLEEDVLEVTY 173          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A7R9X0H8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9X0H8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.500e-12
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  159 LPTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRG 338
            +PT++ +++L+ G KVRI+K++GAIIPRPEILK RR P +++    DTA ED   +T++G
Sbjct:  150 IPTRIYKKVLDSGEKVRISKKSGAIIPRPEILKYRRKPVNSIVTESDTADEDAWAITYKG 209          
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Match: A0A1Z5JSX3_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSX3_FISSO)

HSP 1 Score: 69.3 bits (168), Expect = 3.700e-12
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  162 PTKVSRQILEDGTKVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTF 332
            PT+++R+ LEDG+KVR+AK++GAIIPRPEIL  R+ P S+     DT +EDV E T+
Sbjct:  112 PTRITRKYLEDGSKVRVAKKSGAIIPRPEILNYRKRPVSSRVTESDTVEEDVWEQTY 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1131.844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ79_ECTSI4.250e-3167.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5A5_9STRA1.270e-1546.51Translation protein SH3-like domain-containing pro... [more]
A0A7S2UWK4_9STRA1.380e-1554.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2X1P5_9STRA2.270e-1546.8450S ribosomal protein L24, chloroplastic n=1 Tax=P... [more]
F0XVF8_AURAN7.380e-1548.1050S ribosomal protein L24, chloroplastic (Fragment... [more]
A0A2D4BXV7_PYTIN2.900e-1358.6250S ribosomal protein L24, chloroplastic n=1 Tax=P... [more]
A0A7S3V6A7_9STRA8.350e-1356.25Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S0XR06_9STRA3.070e-1256.92Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A7R9X0H8_9STRA3.500e-1250.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1Z5JSX3_FISSO3.700e-1256.14Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1131contigH-paniculata_contig1131:24639..25383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue4.6e-25
Seed eggNOG ortholog2880.D7FZ79
KEGG koko:K02895
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0198@1,KOG1708@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size387
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1131.844.1prot_H-paniculata_contig1131.844.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1131 24655..25333 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.3870115-UTR-H-paniculata_contig1131:24638..246541622928839.3870115-UTR-H-paniculata_contig1131:24638..24654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1131 24639..24654 -
1691480639.889405-UTR-H-paniculata_contig1131:24638..246541691480639.889405-UTR-H-paniculata_contig1131:24638..24654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1131 24639..24654 -
1622928839.43441-UTR-H-paniculata_contig1131:25333..253831622928839.43441-UTR-H-paniculata_contig1131:25333..25383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1131 25334..25383 -
1691480639.9176893-UTR-H-paniculata_contig1131:25333..253831691480639.9176893-UTR-H-paniculata_contig1131:25333..25383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1131 25334..25383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.401457-CDS-H-paniculata_contig1131:24654..247681622928839.401457-CDS-H-paniculata_contig1131:24654..24768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 24655..24768 -
1691480639.9003425-CDS-H-paniculata_contig1131:24654..247681691480639.9003425-CDS-H-paniculata_contig1131:24654..24768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 24655..24768 -
1622928839.417066-CDS-H-paniculata_contig1131:25126..253331622928839.417066-CDS-H-paniculata_contig1131:25126..25333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 25127..25333 -
1691480639.9087777-CDS-H-paniculata_contig1131:25126..253331691480639.9087777-CDS-H-paniculata_contig1131:25126..25333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1131 25127..25333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1131.844.1

>prot_H-paniculata_contig1131.844.1 ID=prot_H-paniculata_contig1131.844.1|Name=mRNA_H-paniculata_contig1131.844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MTSFIISCPYSLALQSLPTSGPARLYLPALRCICCSLPTKVSRQILEDGT
KVRIAKRTGAIIPRPEILKVRRVPRSNLTGPKDTAKEDVLEVTFRGLDER
GYENPH*
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mRNA from alignment at H-paniculata_contig1131:24639..25383-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1131.844.1 ID=mRNA_H-paniculata_contig1131.844.1|Name=mRNA_H-paniculata_contig1131.844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=745bp|location=Sequence derived from alignment at H-paniculata_contig1131:24639..25383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTAAATTTATTGATTTGTGTAAGTATGACCAACCACGGTCGCAGGCGAT ATGACCTCATTCATTATCTCGTGCCCCTATTCTCTCGCCCTCCAATCCTT GCCCACCTCCGGCCCGGCCCGGCTATACCTACCCGCGCTACGCTGTATTT GTTGCAGTTTACCCACGAAAGTATCAAGACAAATCCTGGAGGATGGCACC AAAGTAAGGATAGCGAAACGAACCGGAGCGATTATCCCACGGCCTGAGAT TCTGAAGGTAATATGTGTATGTATTTTGACACATGTCCGACCTCGTCCCA CGGAGAAATGATTCAAGATAACCCGCGCGGGAATAGCTGGTGATTCAGTC GTCGATTCTAATTTCATTTTCTAATGTAGGTTCGATTTTTTAACGTTGTT GCTTTTTGAGTATTTGTCCAAACTTTGATCCTAGTCGAGTAGATGCTGTT CTGAAGGTGAAATCGTCCTTGACAGAGGGCATATGTGGCGTTACCCCCGC CCCCCCCCCACTCCACCTTTCCATCCCTCCTGCGCGCGCATGTCTGCGTT CACGGTAGCCAAACCCGAATTTCTCTGTTTCCCCTGATATCTCGAAAATA ATTTCTCTGACGCAGGTTCGACGGGTTCCACGTAGTAACCTTACAGGACC GAAAGATACGGCGAAGGAAGACGTGTTGGAGGTTACGTTCAGAGGGCTAG ACGAAAGGGGATATGAAAATCCCCATTAGAGCGACTTGTTTAGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig1131:24639..25383-

>mRNA_H-paniculata_contig1131.844.1 ID=mRNA_H-paniculata_contig1131.844.1|Name=mRNA_H-paniculata_contig1131.844.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig1131:24639..25383- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCTCATTCATTATCTCGTGCCCCTATTCTCTCGCCCTCCAATCCTT
GCCCACCTCCGGCCCGGCCCGGCTATACCTACCCGCGCTACGCTGTATTT
GTTGCAGTTTACCCACGAAAGTATCAAGACAAATCCTGGAGGATGGCACC
AAAGTAAGGATAGCGAAACGAACCGGAGCGATTATCCCACGGCCTGAGAT
TCTGAAGATGACCTCATTCATTATCTCGTGCCCCTATTCTCTCGCCCTCC
AATCCTTGCCCACCTCCGGCCCGGCCCGGCTATACCTACCCGCGCTACGC
TGTATTTGTTGCAGTTTACCCACGAAAGTATCAAGACAAATCCTGGAGGA
TGGCACCAAAGTAAGGATAGCGAAACGAACCGGAGCGATTATCCCACGGC
CTGAGATTCTGAAGGTTCGACGGGTTCCACGTAGTAACCTTACAGGACCG
AAAGATACGGCGAAGGAAGACGTGTTGGAGGTTACGTTCAGAGGGCTAGA
CGAAAGGGGATATGAAAATCCCCATTAGGTTCGACGGGTTCCACGTAGTA
ACCTTACAGGACCGAAAGATACGGCGAAGGAAGACGTGTTGGAGGTTACG
TTCAGAGGGCTAGACGAAAGGGGATATGAAAATCCCCATTAG
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